RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 EML1O00423 815 aa10.04□□□□□ -0.8
USP40-202ENST00000409945 FOXO3O43524 673 aa10.04□□□□□ -0.8
USP40-202ENST00000409945 COX20Q5RI15 118 aa10.04□□□□□ -0.8
USP40-202ENST00000409945 MAPKBP1O60336 1514 aa10.04□□□□□ -0.8
USP40-202ENST00000409945 ABCC2Q92887 1545 aa10.04□□□□□ -0.8
USP40-202ENST00000409945 UHRF1BP1LA0JNW5 1464 aa10.04□□□□□ -0.8
USP40-202ENST00000409945 BIN2Q9UBW5 565 aaPredicted RBP10.03□□□□□ -0.8
USP40-202ENST00000409945 CDK2AP1O14519 115 aa10.03□□□□□ -0.8
USP40-202ENST00000409945 TNFRSF10BO14763 440 aa10.03□□□□□ -0.8
USP40-202ENST00000409945 ZBTB39O15060 712 aa10.03□□□□□ -0.8
USP40-202ENST00000409945 POTEAQ6S8J7 498 aa10.03□□□□□ -0.8
USP40-202ENST00000409945 LINC00528Q8N1L1 170 aa10.03□□□□□ -0.8
USP40-202ENST00000409945 NGLY1Q96IV0 654 aa10.03□□□□□ -0.8
USP40-202ENST00000409945 CAPN5O15484 640 aaPredicted RBP10.02□□□□□ -0.81
USP40-202ENST00000409945 HCN4Q9Y3Q4 1203 aa10.02□□□□□ -0.81
USP40-202ENST00000409945 PSMA6P60900 246 aaKnown RBP10.01□□□□□ -0.81
USP40-202ENST00000409945 C6orf118Q5T5N4 469 aa10.01□□□□□ -0.81
USP40-202ENST00000409945 L3MBTL2Q969R5 705 aa10.01□□□□□ -0.81
USP40-202ENST00000409945 PLB1Q6P1J6 1458 aa10.01□□□□□ -0.81
USP40-202ENST00000409945 MPSTP25325 297 aa10.01□□□□□ -0.81
USP40-202ENST00000409945 TXLNAP40222 546 aa10.01□□□□□ -0.81
USP40-202ENST00000409945 RANGAP1P46060 587 aaPredicted RBP10.01□□□□□ -0.81
USP40-202ENST00000409945 PPARGC1BQ86YN6 1023 aaKnown RBP10.01□□□□□ -0.81
USP40-202ENST00000409945 HELQQ8TDG4 1101 aa10.01□□□□□ -0.81
USP40-202ENST00000409945 NPM2Q86SE8 214 aaKnown RBP10□□□□□ -0.81
USP40-202ENST00000409945 GLYCTKQ8IVS8 523 aa10□□□□□ -0.81
USP40-202ENST00000409945 NLRP3Q96P20 1036 aa10□□□□□ -0.81
USP40-202ENST00000409945 CABP1Q9NZU7 370 aa10□□□□□ -0.81
USP40-202ENST00000409945 ABCC10Q5T3U5 1492 aa10□□□□□ -0.81
USP40-202ENST00000409945 FAM187AA6NFU0 413 aa9.99□□□□□ -0.81
USP40-202ENST00000409945 SPINT1O43278 529 aa9.99□□□□□ -0.81
USP40-202ENST00000409945 PTCD1O75127 700 aaKnown RBP9.99□□□□□ -0.81
USP40-202ENST00000409945 NOS2P35228 1153 aa9.99□□□□□ -0.81
USP40-202ENST00000409945 ZSCAN10Q96SZ4 725 aaPredicted RBP9.99□□□□□ -0.81
USP40-202ENST00000409945 GRIP2Q9C0E4 1043 aa9.99□□□□□ -0.81
USP40-202ENST00000409945 EGFL7Q9UHF1 273 aa9.99□□□□□ -0.81
USP40-202ENST00000409945 PHKA2P46019 1235 aa9.99□□□□□ -0.81
USP40-202ENST00000409945 C4orf17Q53FE4 359 aa9.99□□□□□ -0.81
USP40-202ENST00000409945 ATCAYQ86WG3 371 aa9.99□□□□□ -0.81
USP40-202ENST00000409945 COL26A1Q96A83 441 aa9.99□□□□□ -0.81
USP40-202ENST00000409945 ZNF232Q9UNY5 417 aa9.99□□□□□ -0.81
USP40-202ENST00000409945 EFCAB5A4FU69 1503 aa9.98□□□□□ -0.81
USP40-202ENST00000409945 FKBP4Q02790 459 aaKnown RBP eCLIP9.98□□□□□ -0.81
USP40-202ENST00000409945 C16orf46Q6P387 395 aa9.98□□□□□ -0.81
USP40-202ENST00000409945 KLK14Q9P0G3 267 aa9.98□□□□□ -0.81
USP40-202ENST00000409945 SERTM1A2A2V5 107 aa9.97□□□□□ -0.81
USP40-202ENST00000409945 TRIM46Q7Z4K8 759 aa9.97□□□□□ -0.81
USP40-202ENST00000409945 ALDH16A1Q8IZ83 802 aa9.97□□□□□ -0.81
USP40-202ENST00000409945 POLMQ9NP87 494 aaPredicted RBP9.97□□□□□ -0.81
USP40-202ENST00000409945 KDM5BQ9UGL1 1544 aa9.97□□□□□ -0.81
USP40-202ENST00000409945 SAMD9Q5K651 1589 aa9.97□□□□□ -0.81
USP40-202ENST00000409945 MARSP56192 900 aaKnown RBP9.97□□□□□ -0.81
USP40-202ENST00000409945 TEAD4Q15561 434 aa9.97□□□□□ -0.81
USP40-202ENST00000409945 PRICKLE2Q7Z3G6 844 aa9.97□□□□□ -0.81
USP40-202ENST00000409945 STAG2Q8N3U4 1231 aa9.97□□□□□ -0.81
USP40-202ENST00000409945 C7orf43Q8WVR3 580 aa9.97□□□□□ -0.81
USP40-202ENST00000409945 TSEN34Q9BSV6 310 aaKnown RBP9.97□□□□□ -0.81
USP40-202ENST00000409945 BCS1LQ9Y276 419 aa9.97□□□□□ -0.81
USP40-202ENST00000409945 ASXL2Q76L83 1435 aa9.97□□□□□ -0.81
USP40-202ENST00000409945 PLA2G4AP47712 749 aa9.96□□□□□ -0.81
USP40-202ENST00000409945 ETFBKMTQ8IXQ9 262 aa9.96□□□□□ -0.81
USP40-202ENST00000409945 RNF217Q8TC41 542 aa9.96□□□□□ -0.81
USP40-202ENST00000409945 KIF13AQ9H1H9 1805 aa9.96□□□□□ -0.82
USP40-202ENST00000409945 DIP2BQ9P265 1576 aa9.96□□□□□ -0.82
USP40-202ENST00000409945 TMEM214Q6NUQ4 689 aaKnown RBP9.95□□□□□ -0.82
USP40-202ENST00000409945 MRPL14Q6P1L8 145 aaKnown RBP9.95□□□□□ -0.82
USP40-202ENST00000409945 PHACTR1Q9C0D0 580 aa9.95□□□□□ -0.82
USP40-202ENST00000409945 ZCCHC11Q5TAX3 1644 aaKnown RBP9.95□□□□□ -0.82
USP40-202ENST00000409945 ABCA8O94911 1581 aa9.95□□□□□ -0.82
USP40-202ENST00000409945 BMP2P12643 396 aa9.95□□□□□ -0.82
USP40-202ENST00000409945 RNF144AP50876 292 aaPredicted RBP9.95□□□□□ -0.82
USP40-202ENST00000409945 TAGLNQ01995 201 aaKnown RBP9.95□□□□□ -0.82
USP40-202ENST00000409945 POU4F2Q12837 409 aa9.95□□□□□ -0.82
USP40-202ENST00000409945 SLC27A3Q5K4L6 730 aa9.95□□□□□ -0.82
USP40-202ENST00000409945 VTI1AQ96AJ9 217 aa9.95□□□□□ -0.82
USP40-202ENST00000409945 CCDC87Q9NVE4 849 aa9.95□□□□□ -0.82
USP40-202ENST00000409945 DACH1Q9UI36 760 aa9.95□□□□□ -0.82
USP40-202ENST00000409945 HIRAP54198 1017 aaPredicted RBP9.94□□□□□ -0.82
USP40-202ENST00000409945 RHBDD1Q8TEB9 315 aa9.94□□□□□ -0.82
USP40-202ENST00000409945 ST8SIA5O15466 376 aa9.94□□□□□ -0.82
USP40-202ENST00000409945 RHOQP17081 205 aa9.94□□□□□ -0.82
USP40-202ENST00000409945 NPR3P17342 541 aa9.94□□□□□ -0.82
USP40-202ENST00000409945 DGKZQ13574 1117 aa9.94□□□□□ -0.82
USP40-202ENST00000409945 FIGNL2A6NMB9 653 aa9.93□□□□□ -0.82
USP40-202ENST00000409945 AVPP01185 164 aa9.93□□□□□ -0.82
USP40-202ENST00000409945 EIF1AXP47813 144 aaKnown RBP9.93□□□□□ -0.82
USP40-202ENST00000409945 NIFKQ9BYG3 293 aaKnown RBP9.93□□□□□ -0.82
USP40-202ENST00000409945 RAPGEF6Q8TEU7 1601 aa9.93□□□□□ -0.82
USP40-202ENST00000409945 WDR7Q9Y4E6 1490 aa9.92□□□□□ -0.82
USP40-202ENST00000409945 SF3B2Q13435 895 aaKnown RBP9.92□□□□□ -0.82
USP40-202ENST00000409945 FHOD3Q2V2M9 1422 aa9.92□□□□□ -0.82
USP40-202ENST00000409945 FMN1Q68DA7 1419 aa9.92□□□□□ -0.82
USP40-202ENST00000409945 GLI2P10070 1586 aa9.92□□□□□ -0.82
USP40-202ENST00000409945 ANKRD33BA6NCL7 494 aa9.92□□□□□ -0.82
USP40-202ENST00000409945 UNCXA6NJT0 531 aa9.92□□□□□ -0.82
USP40-202ENST00000409945 FZD6O60353 706 aa9.92□□□□□ -0.82
USP40-202ENST00000409945 ATP4AP20648 1035 aa9.92□□□□□ -0.82
USP40-202ENST00000409945 ZNF280CQ8ND82 737 aa9.92□□□□□ -0.82
USP40-202ENST00000409945 TRIM52Q96A61 297 aa9.92□□□□□ -0.82
USP40-202ENST00000409945 MYO19Q96H55 970 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms