RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 CFAP157Q5JU67 520 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 AFAP1L2Q8N4X5 818 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 PSMD1Q99460 953 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 MTIF2P46199 727 aaKnown RBP9.02□□□□□ -0.97
SYNE1-210ENST00000409694 ATP11AP98196 1134 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 GABPB2Q8TAK5 448 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-210ENST00000409694 STMN2Q93045 179 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 IFT74Q96LB3 600 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 CCDC50Q8IVM0 306 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 CABP4P57796 275 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 SSRP1Q08945 709 aaKnown RBP9.02□□□□□ -0.97
SYNE1-210ENST00000409694 ARHGAP5Q13017 1502 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 RBM25P49756 843 aaKnown RBP9.02□□□□□ -0.97
SYNE1-210ENST00000409694 CCDC82Q8N4S0 544 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 LUC7L2Q9Y383 392 aaKnown RBP9.02□□□□□ -0.97
SYNE1-210ENST00000409694 ARID4AP29374 1257 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-210ENST00000409694 FHOD3Q2V2M9 1422 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 CHD1LQ86WJ1 897 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 CACNA2D3Q8IZS8 1091 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 RAB3IPQ96QF0 476 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-210ENST00000409694 TRIM7Q9C029 511 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 RABGAP1Q9Y3P9 1069 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 PRC1O43663 620 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 SH3BP5O60239 455 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 GBP1P32455 592 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 IRX3P78415 501 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-210ENST00000409694 CAVIN4Q5BKX8 364 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 CNNM3Q8NE01 707 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 C8orf76Q96K31 380 aa9.02□□□□□ -0.97
SYNE1-210ENST00000409694 LACTBP83111 547 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-210ENST00000409694 SYCP3Q8IZU3 236 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 ERMNQ8TAM6 284 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 ARFGAP3Q9NP61 516 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 NOP2P46087 812 aaKnown RBP9.01□□□□□ -0.97
SYNE1-210ENST00000409694 CCDC40Q4G0X9 1142 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 IQCA1Q86XH1 822 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 OTUD6BQ8N6M0 293 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 TSGA10Q9BZW7 698 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 CRACR2BQ8N4Y2 399 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-210ENST00000409694 DAPK1P53355 1430 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 CCDC194A0A1B0GVG4 234 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 HAUS2Q9NVX0 235 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 TXNDC16Q9P2K2 825 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 TUBBP07437 444 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 CATIPQ7Z7H3 387 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 PDZRN3Q9UPQ7 1066 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 PPFIA2O75334 1257 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 HDGFL1Q5TGJ6 251 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 SAMD15Q9P1V8 674 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 A6NNZ2 444 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 SATB1Q01826 763 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 TUBB8Q3ZCM7 444 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 KLHL10Q6JEL2 608 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 TRPC3Q13507 836 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 TTC31Q49AM3 519 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-210ENST00000409694 CACYBPQ9HB71 228 aaKnown RBP9.01□□□□□ -0.97
SYNE1-210ENST00000409694 SEPT10Q9P0V9 454 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 SLC12A7Q9Y666 1083 aa9.01□□□□□ -0.97
SYNE1-210ENST00000409694 PPFIBP2Q8ND30 876 aa9□□□□□ -0.97
SYNE1-210ENST00000409694 SERPINA10Q9UK55 444 aa9□□□□□ -0.97
SYNE1-210ENST00000409694 NOB1Q9ULX3 412 aaKnown RBP9□□□□□ -0.97
SYNE1-210ENST00000409694 IBSPP21815 317 aaPredicted RBP9□□□□□ -0.97
SYNE1-210ENST00000409694 ATF7IPQ6VMQ6 1270 aa9□□□□□ -0.97
SYNE1-210ENST00000409694 CCDC63Q8NA47 563 aa9□□□□□ -0.97
SYNE1-210ENST00000409694 CTAGE9A4FU28 777 aa9□□□□□ -0.97
SYNE1-210ENST00000409694 TRAF1Q13077 416 aa9□□□□□ -0.97
SYNE1-210ENST00000409694 CYLC1P35663 651 aaPredicted RBP9□□□□□ -0.97
SYNE1-210ENST00000409694 CAMK4Q16566 473 aa9□□□□□ -0.97
SYNE1-210ENST00000409694 RBM42Q9BTD8 480 aaKnown RBP9□□□□□ -0.97
SYNE1-210ENST00000409694 BMP15O95972 392 aa9□□□□□ -0.97
SYNE1-210ENST00000409694 EXOC1Q9NV70 894 aa9□□□□□ -0.97
SYNE1-210ENST00000409694 STX6O43752 255 aa9□□□□□ -0.97
SYNE1-210ENST00000409694 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9□□□□□ -0.97
SYNE1-210ENST00000409694 PAIP2Q9BPZ3 127 aaKnown RBP9□□□□□ -0.97
SYNE1-210ENST00000409694 MKNK2Q9HBH9 465 aa9□□□□□ -0.97
SYNE1-210ENST00000409694 MAPK8IP2Q13387 824 aaPredicted RBP9□□□□□ -0.97
SYNE1-210ENST00000409694 DHX29Q7Z478 1369 aaKnown RBP9□□□□□ -0.97
SYNE1-210ENST00000409694 CCDC144CPQ8IYA2 1237 aa9□□□□□ -0.97
SYNE1-210ENST00000409694 CEP126Q9P2H0 1117 aa9□□□□□ -0.97
SYNE1-210ENST00000409694 CWC27Q6UX04 472 aaKnown RBP9□□□□□ -0.97
SYNE1-210ENST00000409694 EPSTI1Q96J88 318 aa9□□□□□ -0.97
SYNE1-210ENST00000409694 A0A1B0GUA9 196 aa8.99□□□□□ -0.97
SYNE1-210ENST00000409694 MCM4P33991 863 aa8.99□□□□□ -0.97
SYNE1-210ENST00000409694 UVSSAQ2YD98 709 aa8.99□□□□□ -0.97
SYNE1-210ENST00000409694 ABTB2Q8N961 1025 aa8.99□□□□□ -0.97
SYNE1-210ENST00000409694 HMGB3O15347 200 aaKnown RBP8.99□□□□□ -0.97
SYNE1-210ENST00000409694 TBCAO75347 108 aaKnown RBP8.99□□□□□ -0.97
SYNE1-210ENST00000409694 CCDC96Q2M329 555 aa8.99□□□□□ -0.97
SYNE1-210ENST00000409694 POLR3DP05423 398 aaPredicted RBP8.99□□□□□ -0.97
SYNE1-210ENST00000409694 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.99□□□□□ -0.97
SYNE1-210ENST00000409694 LMNTD2Q8IXW0 634 aa8.99□□□□□ -0.97
SYNE1-210ENST00000409694 GBP7Q8N8V2 638 aaPredicted RBP8.99□□□□□ -0.97
SYNE1-210ENST00000409694 TCHPQ9BT92 498 aa8.99□□□□□ -0.97
SYNE1-210ENST00000409694 NAPBQ9H115 298 aa8.99□□□□□ -0.97
SYNE1-210ENST00000409694 TTC36A6NLP5 189 aa8.99□□□□□ -0.97
SYNE1-210ENST00000409694 MVPQ14764 893 aaKnown RBP8.99□□□□□ -0.97
SYNE1-210ENST00000409694 KANK4Q5T7N3 995 aaPredicted RBP8.99□□□□□ -0.97
SYNE1-210ENST00000409694 GSTA5Q7RTV2 222 aa8.99□□□□□ -0.97
SYNE1-210ENST00000409694 C10orf67Q8IYJ2 551 aa8.99□□□□□ -0.97
SYNE1-210ENST00000409694 CCT6BQ92526 530 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms