RNA–Protein interactions for RNA: ENST00000398743.6

PRAME-202, Transcript of preferentially expressed antigen in melanoma, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PRAME, Length 2,196 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAME-202ENST00000398743 MRC1P22897 1456 aa16.83■□□□□ 0.28
PRAME-202ENST00000398743 C5P01031 1676 aa16.83■□□□□ 0.28
PRAME-202ENST00000398743 SGSM2O43147 1006 aa16.82■□□□□ 0.28
PRAME-202ENST00000398743 MYL6BP14649 208 aa16.82■□□□□ 0.28
PRAME-202ENST00000398743 NEXNQ0ZGT2 675 aa16.82■□□□□ 0.28
PRAME-202ENST00000398743 GPATCH3Q96I76 525 aa16.82■□□□□ 0.28
PRAME-202ENST00000398743 SUCLG2Q96I99 432 aa16.82■□□□□ 0.28
PRAME-202ENST00000398743 TMX3Q96JJ7 454 aa16.82■□□□□ 0.28
PRAME-202ENST00000398743 HSPA4P34932 840 aa16.82■□□□□ 0.28
PRAME-202ENST00000398743 ZNF496Q96IT1 587 aaPredicted RBP16.82■□□□□ 0.28
PRAME-202ENST00000398743 PA2G4Q9UQ80 394 aaKnown RBP16.82■□□□□ 0.28
PRAME-202ENST00000398743 CYP27B1O15528 508 aa16.81■□□□□ 0.28
PRAME-202ENST00000398743 IGKV5-2P06315 115 aa16.81■□□□□ 0.28
PRAME-202ENST00000398743 XRCC6P12956 609 aaKnown RBP eCLIP16.81■□□□□ 0.28
PRAME-202ENST00000398743 BICC1Q9H694 974 aaKnown RBP16.81■□□□□ 0.28
PRAME-202ENST00000398743 RTN4Q9NQC3 1192 aaKnown RBP16.81■□□□□ 0.28
PRAME-202ENST00000398743 RAD50Q92878 1312 aa16.81■□□□□ 0.28
PRAME-202ENST00000398743 SNRPA1P09661 255 aaKnown RBP16.81■□□□□ 0.28
PRAME-202ENST00000398743 IFIT2P09913 472 aaKnown RBP16.81■□□□□ 0.28
PRAME-202ENST00000398743 PKP1Q13835 747 aa16.81■□□□□ 0.28
PRAME-202ENST00000398743 XAGE3Q8WTP9 111 aa16.81■□□□□ 0.28
PRAME-202ENST00000398743 KAZALD1Q96I82 304 aa16.81■□□□□ 0.28
PRAME-202ENST00000398743 ECHDC1Q9NTX5 307 aa16.81■□□□□ 0.28
PRAME-202ENST00000398743 MRE11P49959 708 aa16.8■□□□□ 0.28
PRAME-202ENST00000398743 PKD1L3Q7Z443 1732 aa16.8■□□□□ 0.28
PRAME-202ENST00000398743 NEURL1BA8MQ27 555 aa16.79■□□□□ 0.28
PRAME-202ENST00000398743 COPS6Q7L5N1 327 aa16.79■□□□□ 0.28
PRAME-202ENST00000398743 FMNL2Q96PY5 1086 aa16.79■□□□□ 0.28
PRAME-202ENST00000398743 CUL4AQ13619 759 aa16.79■□□□□ 0.28
PRAME-202ENST00000398743 METTL22Q9BUU2 404 aaPredicted RBP16.79■□□□□ 0.28
PRAME-202ENST00000398743 AK9Q5TCS8 1911 aa16.79■□□□□ 0.28
PRAME-202ENST00000398743 G3BP1Q13283 466 aaKnown RBP eCLIP16.78■□□□□ 0.28
PRAME-202ENST00000398743 KLHL40Q2TBA0 621 aa16.78■□□□□ 0.28
PRAME-202ENST00000398743 MCTP1Q6DN14 999 aa16.78■□□□□ 0.28
PRAME-202ENST00000398743 AACSQ86V21 672 aa16.78■□□□□ 0.28
PRAME-202ENST00000398743 CABP4P57796 275 aa16.78■□□□□ 0.28
PRAME-202ENST00000398743 GCKRQ14397 625 aa16.78■□□□□ 0.28
PRAME-202ENST00000398743 CWC27Q6UX04 472 aaKnown RBP16.78■□□□□ 0.28
PRAME-202ENST00000398743 KIAA1211Q6ZU35 1233 aa16.78■□□□□ 0.28
PRAME-202ENST00000398743 INTS4Q96HW7 963 aaKnown RBP16.78■□□□□ 0.28
PRAME-202ENST00000398743 MYD88Q99836 296 aa16.78■□□□□ 0.28
PRAME-202ENST00000398743 UPF3BQ9BZI7 483 aaKnown RBP16.78■□□□□ 0.28
PRAME-202ENST00000398743 LSG1Q9H089 658 aaKnown RBP16.78■□□□□ 0.28
PRAME-202ENST00000398743 DIAPH3Q9NSV4 1193 aa16.78■□□□□ 0.28
PRAME-202ENST00000398743 USP16Q9Y5T5 823 aa16.78■□□□□ 0.28
PRAME-202ENST00000398743 DDX49Q9Y6V7 483 aaKnown RBP16.78■□□□□ 0.28
PRAME-202ENST00000398743 HSPA2P54652 639 aa16.77■□□□□ 0.28
PRAME-202ENST00000398743 ANKRD13DQ6ZTN6 518 aa16.77■□□□□ 0.28
PRAME-202ENST00000398743 RUFY2Q8WXA3 655 aa16.77■□□□□ 0.28
PRAME-202ENST00000398743 SASH1O94885 1247 aa16.77■□□□□ 0.27
PRAME-202ENST00000398743 BRINP3Q76B58 766 aa16.77■□□□□ 0.27
PRAME-202ENST00000398743 LRP10Q7Z4F1 713 aa16.77■□□□□ 0.27
PRAME-202ENST00000398743 GRPEL1Q9HAV7 217 aa16.77■□□□□ 0.27
PRAME-202ENST00000398743 ZDHHC9Q9Y397 364 aa16.77■□□□□ 0.27
PRAME-202ENST00000398743 NOL8Q76FK4 1167 aaKnown RBP16.75■□□□□ 0.27
PRAME-202ENST00000398743 EVI5LQ96CN4 794 aa16.75■□□□□ 0.27
PRAME-202ENST00000398743 SNX14Q9Y5W7 946 aa16.75■□□□□ 0.27
PRAME-202ENST00000398743 PARP4Q9UKK3 1724 aaKnown RBP16.75■□□□□ 0.27
PRAME-202ENST00000398743 EAF2Q96CJ1 260 aaPredicted RBP16.74■□□□□ 0.27
PRAME-202ENST00000398743 PANK2Q9BZ23 570 aa16.74■□□□□ 0.27
PRAME-202ENST00000398743 WDR17Q8IZU2 1322 aa16.74■□□□□ 0.27
PRAME-202ENST00000398743 SIL1Q9H173 461 aa16.74■□□□□ 0.27
PRAME-202ENST00000398743 PRDM11Q9NQV5 511 aa16.74■□□□□ 0.27
PRAME-202ENST00000398743 LMBRD1Q9NUN5 540 aa16.74■□□□□ 0.27
PRAME-202ENST00000398743 PCDH11XQ9BZA7 1347 aa16.73■□□□□ 0.27
PRAME-202ENST00000398743 PCDH11YQ9BZA8 1340 aa16.73■□□□□ 0.27
PRAME-202ENST00000398743 PIP4K2AP48426 406 aaPredicted RBP16.73■□□□□ 0.27
PRAME-202ENST00000398743 HIP1O00291 1037 aa16.72■□□□□ 0.27
PRAME-202ENST00000398743 BRD1O95696 1058 aa16.72■□□□□ 0.27
PRAME-202ENST00000398743 EPHA10Q5JZY3 1008 aa16.72■□□□□ 0.27
PRAME-202ENST00000398743 TOM1L2Q6ZVM7 507 aa16.72■□□□□ 0.27
PRAME-202ENST00000398743 FAM43AQ8N2R8 423 aa16.72■□□□□ 0.27
PRAME-202ENST00000398743 CCDC8Q9H0W5 538 aaPredicted RBP16.72■□□□□ 0.27
PRAME-202ENST00000398743 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.72■□□□□ 0.27
PRAME-202ENST00000398743 GLI3P10071 1580 aa16.71■□□□□ 0.27
PRAME-202ENST00000398743 XIRP1Q702N8 1843 aaKnown RBP16.71■□□□□ 0.27
PRAME-202ENST00000398743 GAS2L3Q86XJ1 694 aa16.71■□□□□ 0.27
PRAME-202ENST00000398743 RASEFQ8IZ41 740 aa16.71■□□□□ 0.27
PRAME-202ENST00000398743 KLHDC4Q8TBB5 520 aa16.71■□□□□ 0.27
PRAME-202ENST00000398743 COL15A1P39059 1388 aa16.71■□□□□ 0.27
PRAME-202ENST00000398743 ZCRB1Q8TBF4 217 aaKnown RBP16.71■□□□□ 0.27
PRAME-202ENST00000398743 LAMB4A4D0S4 1761 aa16.7■□□□□ 0.26
PRAME-202ENST00000398743 SOS2Q07890 1332 aaPredicted RBP16.7■□□□□ 0.26
PRAME-202ENST00000398743 ERBB4Q15303 1308 aa16.7■□□□□ 0.26
PRAME-202ENST00000398743 PLBD2Q8NHP8 589 aa16.7■□□□□ 0.26
PRAME-202ENST00000398743 TTC14Q96N46 770 aa16.7■□□□□ 0.26
PRAME-202ENST00000398743 COPRSQ9NQ92 184 aa16.7■□□□□ 0.26
PRAME-202ENST00000398743 TLR7Q9NYK1 1049 aaKnown RBP16.7■□□□□ 0.26
PRAME-202ENST00000398743 COL5A2P05997 1499 aaPredicted RBP16.7■□□□□ 0.26
PRAME-202ENST00000398743 PRPF40AO75400 957 aaKnown RBP16.7■□□□□ 0.26
PRAME-202ENST00000398743 PTH1RQ03431 593 aa16.69■□□□□ 0.26
PRAME-202ENST00000398743 RABL6Q3YEC7 729 aaPredicted RBP16.69■□□□□ 0.26
PRAME-202ENST00000398743 UBE3BQ7Z3V4 1068 aa16.69■□□□□ 0.26
PRAME-202ENST00000398743 A0A087WZG4 1122 aa16.68■□□□□ 0.26
PRAME-202ENST00000398743 ERVV-2B6SEH9 535 aa16.68■□□□□ 0.26
PRAME-202ENST00000398743 NCLP19338 710 aaKnown RBP16.68■□□□□ 0.26
PRAME-202ENST00000398743 FOXD4L5Q5VV16 416 aaPredicted RBP16.68■□□□□ 0.26
PRAME-202ENST00000398743 FOXD4L4Q8WXT5 416 aaPredicted RBP16.68■□□□□ 0.26
PRAME-202ENST00000398743 SLAIN2Q9P270 581 aa16.68■□□□□ 0.26
PRAME-202ENST00000398743 ARFGEF2Q9Y6D5 1785 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms