RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 CAMTA2O94983 1202 aa17.66■□□□□ 0.42
VCX3A-202ENST00000398729 PIP4K2AP48426 406 aaPredicted RBP17.66■□□□□ 0.42
VCX3A-202ENST00000398729 RIPK4P57078 832 aa17.66■□□□□ 0.42
VCX3A-202ENST00000398729 WDR43Q15061 677 aaKnown RBP eCLIP17.66■□□□□ 0.42
VCX3A-202ENST00000398729 C2CD5Q86YS7 1000 aa17.66■□□□□ 0.42
VCX3A-202ENST00000398729 TNRC6CQ9HCJ0 1690 aaKnown RBP17.66■□□□□ 0.42
VCX3A-202ENST00000398729 LMOD3Q0VAK6 560 aa17.65■□□□□ 0.42
VCX3A-202ENST00000398729 PRKRIP1Q9H875 184 aaPredicted RBP17.65■□□□□ 0.42
VCX3A-202ENST00000398729 LAMB4A4D0S4 1761 aa17.65■□□□□ 0.42
VCX3A-202ENST00000398729 BCORQ6W2J9 1755 aa17.65■□□□□ 0.42
VCX3A-202ENST00000398729 CARMIL3Q8ND23 1372 aa17.65■□□□□ 0.42
VCX3A-202ENST00000398729 TMPOP42166 694 aaKnown RBP17.64■□□□□ 0.41
VCX3A-202ENST00000398729 SETDB2Q96T68 719 aa17.64■□□□□ 0.41
VCX3A-202ENST00000398729 NBPF26B4DH59 902 aa17.63■□□□□ 0.41
VCX3A-202ENST00000398729 H0YIN7 160 aa17.63■□□□□ 0.41
VCX3A-202ENST00000398729 HSPA1AP0DMV8 641 aaKnown RBP17.63■□□□□ 0.41
VCX3A-202ENST00000398729 HSPA1BP0DMV9 641 aaKnown RBP17.63■□□□□ 0.41
VCX3A-202ENST00000398729 EIF4A1P60842 406 aaKnown RBP17.63■□□□□ 0.41
VCX3A-202ENST00000398729 NBPF10Q6P3W6 841 aaKnown RBP17.63■□□□□ 0.41
VCX3A-202ENST00000398729 NBPF15Q8N660 670 aa17.63■□□□□ 0.41
VCX3A-202ENST00000398729 ZNF652Q9Y2D9 606 aa17.63■□□□□ 0.41
VCX3A-202ENST00000398729 CCDC88AQ3V6T2 1871 aa17.63■□□□□ 0.41
VCX3A-202ENST00000398729 NPHP1O15259 732 aa17.62■□□□□ 0.41
VCX3A-202ENST00000398729 CLEC4GQ6UXB4 293 aa17.62■□□□□ 0.41
VCX3A-202ENST00000398729 CCDC146Q8IYE0 955 aa17.62■□□□□ 0.41
VCX3A-202ENST00000398729 RUNDC1Q96C34 613 aa17.61■□□□□ 0.41
VCX3A-202ENST00000398729 TSPYL4Q9UJ04 414 aa17.61■□□□□ 0.41
VCX3A-202ENST00000398729 DLEC1Q9Y238 1755 aa17.61■□□□□ 0.41
VCX3A-202ENST00000398729 RGL2O15211 777 aa17.6■□□□□ 0.41
VCX3A-202ENST00000398729 PDE6BP35913 854 aa17.6■□□□□ 0.41
VCX3A-202ENST00000398729 NEUROD2Q15784 382 aa17.6■□□□□ 0.41
VCX3A-202ENST00000398729 PRR5LQ6MZQ0 368 aa17.6■□□□□ 0.41
VCX3A-202ENST00000398729 CCDC24Q8N4L8 307 aa17.6■□□□□ 0.41
VCX3A-202ENST00000398729 CNBD1Q8NA66 436 aa17.6■□□□□ 0.41
VCX3A-202ENST00000398729 BRIP1Q9BX63 1249 aa17.6■□□□□ 0.41
VCX3A-202ENST00000398729 BABAM1Q9NWV8 329 aa17.6■□□□□ 0.41
VCX3A-202ENST00000398729 ADAMTS8Q9UP79 889 aa17.6■□□□□ 0.41
VCX3A-202ENST00000398729 PDZRN3Q9UPQ7 1066 aa17.6■□□□□ 0.41
VCX3A-202ENST00000398729 RRP7AQ9Y3A4 280 aaKnown RBP17.6■□□□□ 0.41
VCX3A-202ENST00000398729 C21orf2O43822 256 aa17.59■□□□□ 0.41
VCX3A-202ENST00000398729 DPY19L2Q6NUT2 758 aa17.59■□□□□ 0.41
VCX3A-202ENST00000398729 ZNF219Q9P2Y4 722 aaPredicted RBP17.59■□□□□ 0.41
VCX3A-202ENST00000398729 POTEIP0CG38 1075 aa17.58■□□□□ 0.4
VCX3A-202ENST00000398729 POTEJP0CG39 1038 aa17.58■□□□□ 0.4
VCX3A-202ENST00000398729 ST5P78524 1137 aa17.58■□□□□ 0.4
VCX3A-202ENST00000398729 ZNF622Q969S3 477 aaKnown RBP eCLIP17.58■□□□□ 0.4
VCX3A-202ENST00000398729 ANKRD31Q8N7Z5 1873 aa17.58■□□□□ 0.4
VCX3A-202ENST00000398729 ERFEQ4G0M1 354 aa17.57■□□□□ 0.4
VCX3A-202ENST00000398729 NBPF5PQ86XG9 351 aaPredicted RBP17.57■□□□□ 0.4
VCX3A-202ENST00000398729 NGEFQ8N5V2 710 aa17.57■□□□□ 0.4
VCX3A-202ENST00000398729 NIP7Q9Y221 180 aaKnown RBP eCLIP17.56■□□□□ 0.4
VCX3A-202ENST00000398729 ERBB4Q15303 1308 aa17.55■□□□□ 0.4
VCX3A-202ENST00000398729 DDNO94850 711 aaPredicted RBP17.55■□□□□ 0.4
VCX3A-202ENST00000398729 MYL6BP14649 208 aa17.55■□□□□ 0.4
VCX3A-202ENST00000398729 KIF6Q6ZMV9 814 aa17.55■□□□□ 0.4
VCX3A-202ENST00000398729 ERVV-1B6SEH8 477 aa17.54■□□□□ 0.4
VCX3A-202ENST00000398729 HLFQ16534 295 aa17.54■□□□□ 0.4
VCX3A-202ENST00000398729 CHADLQ6NUI6 762 aa17.54■□□□□ 0.4
VCX3A-202ENST00000398729 TPTE2Q6XPS3 522 aa17.54■□□□□ 0.4
VCX3A-202ENST00000398729 CREBZFQ9NS37 354 aa17.54■□□□□ 0.4
VCX3A-202ENST00000398729 TRIM35Q9UPQ4 493 aa17.54■□□□□ 0.4
VCX3A-202ENST00000398729 MAP3K15Q6ZN16 1313 aa17.53■□□□□ 0.4
VCX3A-202ENST00000398729 EIF2S2P20042 333 aaKnown RBP17.53■□□□□ 0.4
VCX3A-202ENST00000398729 MKRN1Q9UHC7 482 aaKnown RBP17.53■□□□□ 0.4
VCX3A-202ENST00000398729 COL11A2P13942 1736 aaPredicted RBP17.52■□□□□ 0.4
VCX3A-202ENST00000398729 TIAM2Q8IVF5 1701 aa17.52■□□□□ 0.4
VCX3A-202ENST00000398729 FER1L6Q2WGJ9 1857 aa17.52■□□□□ 0.4
VCX3A-202ENST00000398729 LTBP3Q9NS15 1303 aa17.52■□□□□ 0.4
VCX3A-202ENST00000398729 TTLL7Q6ZT98 887 aa17.52■□□□□ 0.4
VCX3A-202ENST00000398729 C7orf43Q8WVR3 580 aa17.52■□□□□ 0.4
VCX3A-202ENST00000398729 CNKSR1Q969H4 720 aa17.52■□□□□ 0.4
VCX3A-202ENST00000398729 LAS1LQ9Y4W2 734 aaKnown RBP17.52■□□□□ 0.4
VCX3A-202ENST00000398729 NUP98P52948 1817 aa17.51■□□□□ 0.39
VCX3A-202ENST00000398729 DICER1Q9UPY3 1922 aaKnown RBP17.51■□□□□ 0.39
VCX3A-202ENST00000398729 FAM177BA6PVY3 158 aa17.51■□□□□ 0.39
VCX3A-202ENST00000398729 CHL1O00533 1208 aa17.51■□□□□ 0.39
VCX3A-202ENST00000398729 SRGNP10124 158 aa17.51■□□□□ 0.39
VCX3A-202ENST00000398729 STYK1Q6J9G0 422 aa17.51■□□□□ 0.39
VCX3A-202ENST00000398729 MASTLQ96GX5 879 aa17.51■□□□□ 0.39
VCX3A-202ENST00000398729 TAOK3Q9H2K8 898 aa17.51■□□□□ 0.39
VCX3A-202ENST00000398729 SLX4Q8IY92 1834 aa17.51■□□□□ 0.39
VCX3A-202ENST00000398729 GTF2E1P29083 439 aaPredicted RBP17.5■□□□□ 0.39
VCX3A-202ENST00000398729 ZNF316A6NFI3 1004 aaPredicted RBP17.49■□□□□ 0.39
VCX3A-202ENST00000398729 FOXN1O15353 648 aa17.49■□□□□ 0.39
VCX3A-202ENST00000398729 PRPF40BQ6NWY9 871 aaKnown RBP17.49■□□□□ 0.39
VCX3A-202ENST00000398729 NYXQ9GZU5 481 aa17.49■□□□□ 0.39
VCX3A-202ENST00000398729 ZBTB3Q9H5J0 574 aa17.49■□□□□ 0.39
VCX3A-202ENST00000398729 PASKQ96RG2 1323 aa17.48■□□□□ 0.39
VCX3A-202ENST00000398729 APAF1O14727 1248 aa17.48■□□□□ 0.39
VCX3A-202ENST00000398729 PDIA6Q15084 440 aa17.48■□□□□ 0.39
VCX3A-202ENST00000398729 CFAP44Q96MT7 982 aa17.48■□□□□ 0.39
VCX3A-202ENST00000398729 CACNA1SQ13698 1873 aa17.48■□□□□ 0.39
VCX3A-202ENST00000398729 KLRG2A4D1S0 409 aaPredicted RBP17.47■□□□□ 0.39
VCX3A-202ENST00000398729 ITGBL1O95965 494 aaPredicted RBP17.47■□□□□ 0.39
VCX3A-202ENST00000398729 NPR1P16066 1061 aa17.47■□□□□ 0.39
VCX3A-202ENST00000398729 GIGYF2Q6Y7W6 1299 aaKnown RBP17.47■□□□□ 0.39
VCX3A-202ENST00000398729 LRP10Q7Z4F1 713 aa17.47■□□□□ 0.39
VCX3A-202ENST00000398729 NECTIN2Q92692 538 aa17.47■□□□□ 0.39
VCX3A-202ENST00000398729 ARFGEF2Q9Y6D5 1785 aa17.47■□□□□ 0.39
VCX3A-202ENST00000398729 GPTP24298 496 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms