RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 CLASRPQ8N2M8 674 aaKnown RBP11.98□□□□□ -0.49
COL17A1-203ENST00000393211 NECTIN2Q92692 538 aa11.98□□□□□ -0.49
COL17A1-203ENST00000393211 ZSWIM6Q9HCJ5 1215 aa11.98□□□□□ -0.49
COL17A1-203ENST00000393211 DIAPH3Q9NSV4 1193 aa11.98□□□□□ -0.49
COL17A1-203ENST00000393211 HYPKQ9NX55 129 aa11.98□□□□□ -0.49
COL17A1-203ENST00000393211 PHRF1Q9P1Y6 1649 aaKnown RBP11.98□□□□□ -0.49
COL17A1-203ENST00000393211 TCHHQ07283 1943 aa11.98□□□□□ -0.49
COL17A1-203ENST00000393211 NCAPD2Q15021 1401 aa11.98□□□□□ -0.49
COL17A1-203ENST00000393211 RASEFQ8IZ41 740 aa11.97□□□□□ -0.49
COL17A1-203ENST00000393211 VSIG10Q8N0Z9 540 aa11.97□□□□□ -0.49
COL17A1-203ENST00000393211 EVI5LQ96CN4 794 aa11.97□□□□□ -0.49
COL17A1-203ENST00000393211 SLC26A8Q96RN1 970 aa11.97□□□□□ -0.49
COL17A1-203ENST00000393211 ECHDC1Q9NTX5 307 aa11.97□□□□□ -0.49
COL17A1-203ENST00000393211 CNPY2Q9Y2B0 182 aa11.97□□□□□ -0.49
COL17A1-203ENST00000393211 CYP46A1Q9Y6A2 500 aa11.97□□□□□ -0.49
COL17A1-203ENST00000393211 CCDC171Q6TFL3 1326 aa11.97□□□□□ -0.49
COL17A1-203ENST00000393211 KDM4AO75164 1064 aa11.97□□□□□ -0.49
COL17A1-203ENST00000393211 MYRIPQ8NFW9 859 aa11.97□□□□□ -0.49
COL17A1-203ENST00000393211 IP6K1Q92551 441 aa11.97□□□□□ -0.49
COL17A1-203ENST00000393211 FUCA2Q9BTY2 467 aa11.97□□□□□ -0.49
COL17A1-203ENST00000393211 ALDH8A1Q9H2A2 487 aaPredicted RBP11.97□□□□□ -0.49
COL17A1-203ENST00000393211 GDPD2Q9HCC8 539 aa11.97□□□□□ -0.49
COL17A1-203ENST00000393211 SNRKQ9NRH2 765 aa11.97□□□□□ -0.49
COL17A1-203ENST00000393211 PDRG1Q9NUG6 133 aa11.97□□□□□ -0.49
COL17A1-203ENST00000393211 LTN1O94822 1766 aa11.96□□□□□ -0.49
COL17A1-203ENST00000393211 ADCY5O95622 1261 aa11.96□□□□□ -0.5
COL17A1-203ENST00000393211 NBPF7P0C2Y1 421 aaPredicted RBP11.96□□□□□ -0.5
COL17A1-203ENST00000393211 ZKSCAN1P17029 563 aaPredicted RBP11.96□□□□□ -0.5
COL17A1-203ENST00000393211 CASTP20810 708 aaKnown RBP11.96□□□□□ -0.5
COL17A1-203ENST00000393211 CWC27Q6UX04 472 aaKnown RBP11.96□□□□□ -0.5
COL17A1-203ENST00000393211 SPTLC3Q9NUV7 552 aa11.96□□□□□ -0.5
COL17A1-203ENST00000393211 DBF4Q9UBU7 674 aaPredicted RBP11.96□□□□□ -0.5
COL17A1-203ENST00000393211 USP25Q9UHP3 1055 aa11.96□□□□□ -0.5
COL17A1-203ENST00000393211 LMTK3Q96Q04 1460 aa11.96□□□□□ -0.5
COL17A1-203ENST00000393211 ELP1O95163 1332 aa11.95□□□□□ -0.5
COL17A1-203ENST00000393211 PI4KAP2A4QPH2 592 aa11.95□□□□□ -0.5
COL17A1-203ENST00000393211 PDCP20941 246 aa11.95□□□□□ -0.5
COL17A1-203ENST00000393211 PSMA5P28066 241 aa11.95□□□□□ -0.5
COL17A1-203ENST00000393211 GTF2F1P35269 517 aaKnown RBP eCLIP11.95□□□□□ -0.5
COL17A1-203ENST00000393211 NECTIN1Q15223 517 aa11.95□□□□□ -0.5
COL17A1-203ENST00000393211 AKAP4Q5JQC9 854 aa11.95□□□□□ -0.5
COL17A1-203ENST00000393211 THEMISQ8N1K5 641 aaPredicted RBP11.95□□□□□ -0.5
COL17A1-203ENST00000393211 PI4KAP1Q8N8J0 262 aa11.95□□□□□ -0.5
COL17A1-203ENST00000393211 ABTB2Q8N961 1025 aa11.95□□□□□ -0.5
COL17A1-203ENST00000393211 MTMR6Q9Y217 621 aa11.95□□□□□ -0.5
COL17A1-203ENST00000393211 ADCY9O60503 1353 aa11.95□□□□□ -0.5
COL17A1-203ENST00000393211 MAP4K4O95819 1239 aaPredicted RBP11.94□□□□□ -0.5
COL17A1-203ENST00000393211 GJB2P29033 226 aa11.94□□□□□ -0.5
COL17A1-203ENST00000393211 OS9Q13438 667 aaPredicted RBP11.94□□□□□ -0.5
COL17A1-203ENST00000393211 NOLC1Q14978 699 aaKnown RBP eCLIP11.94□□□□□ -0.5
COL17A1-203ENST00000393211 ANKRD1Q15327 319 aa11.94□□□□□ -0.5
COL17A1-203ENST00000393211 AMOTQ4VCS5 1084 aa11.94□□□□□ -0.5
COL17A1-203ENST00000393211 FAM13BQ9NYF5 915 aa11.94□□□□□ -0.5
COL17A1-203ENST00000393211 CHPF2Q9P2E5 772 aa11.94□□□□□ -0.5
COL17A1-203ENST00000393211 NFAT5O94916 1531 aa11.94□□□□□ -0.5
COL17A1-203ENST00000393211 GOLGA6L6A8MZA4 724 aa11.93□□□□□ -0.5
COL17A1-203ENST00000393211 IFIT2P09913 472 aaKnown RBP11.93□□□□□ -0.5
COL17A1-203ENST00000393211 CCDC192P0DO97 292 aa11.93□□□□□ -0.5
COL17A1-203ENST00000393211 HCLS1P14317 486 aaPredicted RBP11.93□□□□□ -0.5
COL17A1-203ENST00000393211 JAKMIP1Q96N16 626 aaKnown RBP11.93□□□□□ -0.5
COL17A1-203ENST00000393211 ZMYND15Q9H091 742 aa11.93□□□□□ -0.5
COL17A1-203ENST00000393211 HEG1Q9ULI3 1381 aa11.93□□□□□ -0.5
COL17A1-203ENST00000393211 UTYO14607 1347 aa11.93□□□□□ -0.5
COL17A1-203ENST00000393211 EIF2S2P20042 333 aaKnown RBP11.93□□□□□ -0.5
COL17A1-203ENST00000393211 RBM10P98175 930 aaKnown RBP11.93□□□□□ -0.5
COL17A1-203ENST00000393211 TEFQ10587 303 aa11.93□□□□□ -0.5
COL17A1-203ENST00000393211 PLEKHO1Q53GL0 409 aaPredicted RBP11.93□□□□□ -0.5
COL17A1-203ENST00000393211 RNF20Q5VTR2 975 aa11.93□□□□□ -0.5
COL17A1-203ENST00000393211 KSR2Q6VAB6 950 aa11.93□□□□□ -0.5
COL17A1-203ENST00000393211 KCNH5Q8NCM2 988 aa11.93□□□□□ -0.5
COL17A1-203ENST00000393211 MAP4K1Q92918 833 aa11.93□□□□□ -0.5
COL17A1-203ENST00000393211 SPG7Q9UQ90 795 aa11.93□□□□□ -0.5
COL17A1-203ENST00000393211 BTBD11A6QL63 1104 aa11.92□□□□□ -0.5
COL17A1-203ENST00000393211 FIBPO43427 364 aa11.92□□□□□ -0.5
COL17A1-203ENST00000393211 KRT85P78386 507 aa11.92□□□□□ -0.5
COL17A1-203ENST00000393211 PTH1RQ03431 593 aa11.92□□□□□ -0.5
COL17A1-203ENST00000393211 FOXD4L6Q3SYB3 417 aaPredicted RBP11.92□□□□□ -0.5
COL17A1-203ENST00000393211 PRPF40BQ6NWY9 871 aaKnown RBP11.92□□□□□ -0.5
COL17A1-203ENST00000393211 FOXD4L3Q6VB84 417 aaPredicted RBP11.92□□□□□ -0.5
COL17A1-203ENST00000393211 CCDC83Q8IWF9 413 aa11.92□□□□□ -0.5
COL17A1-203ENST00000393211 C9orf78Q9NZ63 289 aaPredicted RBP11.92□□□□□ -0.5
COL17A1-203ENST00000393211 DNM1Q05193 864 aaKnown RBP11.91□□□□□ -0.5
COL17A1-203ENST00000393211 TSGA10IPQ3SY00 556 aa11.91□□□□□ -0.5
COL17A1-203ENST00000393211 DNTTIP2Q5QJE6 756 aaKnown RBP11.91□□□□□ -0.5
COL17A1-203ENST00000393211 LTV1Q96GA3 475 aaPredicted RBP11.91□□□□□ -0.5
COL17A1-203ENST00000393211 SCAND2PQ9GZW5 306 aaPredicted RBP11.91□□□□□ -0.5
COL17A1-203ENST00000393211 HMG20BQ9P0W2 317 aa11.91□□□□□ -0.5
COL17A1-203ENST00000393211 JCADQ9P266 1359 aa11.9□□□□□ -0.5
COL17A1-203ENST00000393211 LARGE1O95461 756 aa11.9□□□□□ -0.5
COL17A1-203ENST00000393211 CREB3L3Q68CJ9 461 aa11.9□□□□□ -0.5
COL17A1-203ENST00000393211 LINS1Q8NG48 757 aa11.9□□□□□ -0.5
COL17A1-203ENST00000393211 LGR6Q9HBX8 967 aa11.9□□□□□ -0.5
COL17A1-203ENST00000393211 RBM8AQ9Y5S9 174 aaKnown RBP11.9□□□□□ -0.5
COL17A1-203ENST00000393211 MRC1P22897 1456 aa11.9□□□□□ -0.51
COL17A1-203ENST00000393211 DDX58O95786 925 aaKnown RBP11.89□□□□□ -0.51
COL17A1-203ENST00000393211 ME3Q16798 604 aa11.89□□□□□ -0.51
COL17A1-203ENST00000393211 ADCK5Q3MIX3 580 aa11.89□□□□□ -0.51
COL17A1-203ENST00000393211 NBPF6Q5VWK0 638 aa11.89□□□□□ -0.51
COL17A1-203ENST00000393211 LARP1BQ659C4 914 aaKnown RBP11.89□□□□□ -0.51
COL17A1-203ENST00000393211 FAM200AQ8TCP9 573 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms