RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 NCAPGQ9BPX3 1015 aa10.02□□□□□ -0.81
LIG3-202ENST00000378526 LNPKQ9C0E8 428 aa10.02□□□□□ -0.81
LIG3-202ENST00000378526 ACTN2P35609 894 aa10.02□□□□□ -0.81
LIG3-202ENST00000378526 GSDMBQ8TAX9 411 aa10.02□□□□□ -0.81
LIG3-202ENST00000378526 ANKRD24Q8TF21 1146 aa10.02□□□□□ -0.81
LIG3-202ENST00000378526 PAK3O75914 559 aaPredicted RBP10.01□□□□□ -0.81
LIG3-202ENST00000378526 ZFXP17010 805 aaPredicted RBP10.01□□□□□ -0.81
LIG3-202ENST00000378526 TTC19Q6DKK2 380 aaPredicted RBP10.01□□□□□ -0.81
LIG3-202ENST00000378526 VEZTQ9HBM0 779 aa10.01□□□□□ -0.81
LIG3-202ENST00000378526 FYB2Q5VWT5 728 aa10.01□□□□□ -0.81
LIG3-202ENST00000378526 KLHDC4Q8TBB5 520 aa10.01□□□□□ -0.81
LIG3-202ENST00000378526 KIAA1524Q8TCG1 905 aa10.01□□□□□ -0.81
LIG3-202ENST00000378526 ATP2A2P16615 1042 aaKnown RBP10.01□□□□□ -0.81
LIG3-202ENST00000378526 COMMD10Q9Y6G5 202 aa10.01□□□□□ -0.81
LIG3-202ENST00000378526 ZEB2O60315 1214 aa10.01□□□□□ -0.81
LIG3-202ENST00000378526 PPFIA1Q13136 1202 aa10.01□□□□□ -0.81
LIG3-202ENST00000378526 CCDC62Q6P9F0 684 aa10.01□□□□□ -0.81
LIG3-202ENST00000378526 CROCCP2Q86T23 111 aa10.01□□□□□ -0.81
LIG3-202ENST00000378526 SMIM24O75264 130 aa10.01□□□□□ -0.81
LIG3-202ENST00000378526 TUBB2AQ13885 445 aa10□□□□□ -0.81
LIG3-202ENST00000378526 PYM1Q9BRP8 204 aaKnown RBP10□□□□□ -0.81
LIG3-202ENST00000378526 TUBB2BQ9BVA1 445 aa10□□□□□ -0.81
LIG3-202ENST00000378526 NOLC1Q14978 699 aaKnown RBP eCLIP10□□□□□ -0.81
LIG3-202ENST00000378526 ODF2LQ9ULJ1 636 aa10□□□□□ -0.81
LIG3-202ENST00000378526 DIXDC1Q155Q3 683 aa10□□□□□ -0.81
LIG3-202ENST00000378526 SRCIN1Q9C0H9 1055 aa10□□□□□ -0.81
LIG3-202ENST00000378526 PHAXQ9H814 394 aaKnown RBP10□□□□□ -0.81
LIG3-202ENST00000378526 VAV2P52735 878 aa10□□□□□ -0.81
LIG3-202ENST00000378526 GNG11P61952 73 aa10□□□□□ -0.81
LIG3-202ENST00000378526 KRT32Q14532 448 aa10□□□□□ -0.81
LIG3-202ENST00000378526 MUM1Q2TAK8 710 aa10□□□□□ -0.81
LIG3-202ENST00000378526 MPNDQ8N594 471 aa10□□□□□ -0.81
LIG3-202ENST00000378526 TRMT1Q9NXH9 659 aaKnown RBP10□□□□□ -0.81
LIG3-202ENST00000378526 PCYT1AP49585 367 aa10□□□□□ -0.81
LIG3-202ENST00000378526 RMDN2Q96LZ7 410 aa10□□□□□ -0.81
LIG3-202ENST00000378526 USP25Q9UHP3 1055 aa10□□□□□ -0.81
LIG3-202ENST00000378526 TPX2Q9ULW0 747 aaKnown RBP10□□□□□ -0.81
LIG3-202ENST00000378526 NUCB1Q02818 461 aa9.99□□□□□ -0.81
LIG3-202ENST00000378526 PHLDB3Q6NSJ2 640 aa9.99□□□□□ -0.81
LIG3-202ENST00000378526 DDX19AQ9NUU7 478 aaKnown RBP9.99□□□□□ -0.81
LIG3-202ENST00000378526 CETN1Q12798 172 aa9.99□□□□□ -0.81
LIG3-202ENST00000378526 TRIM60Q495X7 471 aa9.99□□□□□ -0.81
LIG3-202ENST00000378526 RAB11FIP4Q86YS3 637 aa9.99□□□□□ -0.81
LIG3-202ENST00000378526 MCUR1Q96AQ8 359 aa9.99□□□□□ -0.81
LIG3-202ENST00000378526 POTEB3A0JP26 581 aa9.99□□□□□ -0.81
LIG3-202ENST00000378526 CCDC14Q49A88 953 aa9.99□□□□□ -0.81
LIG3-202ENST00000378526 POTEBQ6S5H4 581 aa9.99□□□□□ -0.81
LIG3-202ENST00000378526 TBC1D31Q96DN5 1066 aa9.99□□□□□ -0.81
LIG3-202ENST00000378526 HAUS8Q9BT25 410 aa9.99□□□□□ -0.81
LIG3-202ENST00000378526 CCDC68Q9H2F9 335 aa9.99□□□□□ -0.81
LIG3-202ENST00000378526 PALMDQ9NP74 551 aa9.99□□□□□ -0.81
LIG3-202ENST00000378526 NDUFAB1O14561 156 aa9.99□□□□□ -0.81
LIG3-202ENST00000378526 MAN1A2O60476 641 aa9.99□□□□□ -0.81
LIG3-202ENST00000378526 DAAM1Q9Y4D1 1078 aa9.99□□□□□ -0.81
LIG3-202ENST00000378526 SYF2O95926 243 aaKnown RBP9.99□□□□□ -0.81
LIG3-202ENST00000378526 SPAG5Q96R06 1193 aa9.99□□□□□ -0.81
LIG3-202ENST00000378526 CTAGE1Q96RT6 745 aa9.99□□□□□ -0.81
LIG3-202ENST00000378526 SERPINI2O75830 405 aa9.99□□□□□ -0.81
LIG3-202ENST00000378526 SCINQ9Y6U3 715 aa9.99□□□□□ -0.81
LIG3-202ENST00000378526 CFAP157Q5JU67 520 aa9.98□□□□□ -0.81
LIG3-202ENST00000378526 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.98□□□□□ -0.81
LIG3-202ENST00000378526 SCAPERQ9BY12 1400 aa9.98□□□□□ -0.81
LIG3-202ENST00000378526 PIBF1Q8WXW3 757 aa9.98□□□□□ -0.81
LIG3-202ENST00000378526 INPP1P49441 399 aa9.98□□□□□ -0.81
LIG3-202ENST00000378526 TBC1D2BQ9UPU7 963 aa9.98□□□□□ -0.81
LIG3-202ENST00000378526 MYO15BQ96JP2 1530 aa9.98□□□□□ -0.81
LIG3-202ENST00000378526 PEX19P40855 299 aa9.98□□□□□ -0.81
LIG3-202ENST00000378526 BLVRAP53004 296 aa9.98□□□□□ -0.81
LIG3-202ENST00000378526 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.98□□□□□ -0.81
LIG3-202ENST00000378526 CCDC152Q4G0S7 254 aa9.98□□□□□ -0.81
LIG3-202ENST00000378526 GKAP1Q5VSY0 366 aaPredicted RBP9.98□□□□□ -0.81
LIG3-202ENST00000378526 TAOK1Q7L7X3 1001 aa9.97□□□□□ -0.81
LIG3-202ENST00000378526 CNPY4Q8N129 248 aa9.97□□□□□ -0.81
LIG3-202ENST00000378526 VPS52Q8N1B4 723 aa9.97□□□□□ -0.81
LIG3-202ENST00000378526 RABEP2Q9H5N1 569 aa9.97□□□□□ -0.81
LIG3-202ENST00000378526 PRKRIP1Q9H875 184 aaPredicted RBP9.97□□□□□ -0.81
LIG3-202ENST00000378526 CXorf38Q8TB03 319 aa9.97□□□□□ -0.81
LIG3-202ENST00000378526 ZKSCAN5Q9Y2L8 839 aa9.97□□□□□ -0.81
LIG3-202ENST00000378526 BAZ1AQ9NRL2 1556 aaPredicted RBP9.97□□□□□ -0.81
LIG3-202ENST00000378526 CCDC7Q96M83 1385 aa9.97□□□□□ -0.81
LIG3-202ENST00000378526 CASTP20810 708 aaKnown RBP9.97□□□□□ -0.81
LIG3-202ENST00000378526 KANK3Q6NY19 840 aa9.97□□□□□ -0.81
LIG3-202ENST00000378526 TSGA10Q9BZW7 698 aa9.97□□□□□ -0.81
LIG3-202ENST00000378526 HIP1RO75146 1068 aa9.97□□□□□ -0.81
LIG3-202ENST00000378526 NKIRAS1Q9NYS0 192 aa9.97□□□□□ -0.81
LIG3-202ENST00000378526 ARHGEF2Q92974 986 aaKnown RBP9.97□□□□□ -0.81
LIG3-202ENST00000378526 DRC3Q9H069 523 aa9.97□□□□□ -0.81
LIG3-202ENST00000378526 SSBP05455 408 aaKnown RBP eCLIP9.96□□□□□ -0.81
LIG3-202ENST00000378526 SELENOSQ9BQE4 189 aa9.96□□□□□ -0.81
LIG3-202ENST00000378526 TACC3Q9Y6A5 838 aa9.96□□□□□ -0.81
LIG3-202ENST00000378526 OPHN1O60890 802 aa9.96□□□□□ -0.81
LIG3-202ENST00000378526 CYLC1P35663 651 aaPredicted RBP9.96□□□□□ -0.81
LIG3-202ENST00000378526 VPS41P49754 854 aa9.96□□□□□ -0.81
LIG3-202ENST00000378526 MTRF1LQ9UGC7 380 aaKnown RBP9.96□□□□□ -0.81
LIG3-202ENST00000378526 SOX12O15370 315 aa9.96□□□□□ -0.81
LIG3-202ENST00000378526 RAP1GDS1P52306 607 aa9.96□□□□□ -0.81
LIG3-202ENST00000378526 ZNF131P52739 623 aa9.96□□□□□ -0.81
LIG3-202ENST00000378526 TMC6Q7Z403 805 aa9.96□□□□□ -0.81
LIG3-202ENST00000378526 SYTL4Q96C24 671 aaPredicted RBP9.96□□□□□ -0.81
LIG3-202ENST00000378526 WASHC4Q2M389 1173 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms