RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 LBRQ14739 615 aaKnown RBP4.86□□□□□ -1.63
VPS13A-206ENST00000376646 PHF24Q9UPV7 400 aa4.86□□□□□ -1.63
VPS13A-206ENST00000376646 HCN4Q9Y3Q4 1203 aa4.86□□□□□ -1.63
VPS13A-206ENST00000376646 PCDHGC4Q9Y5F7 938 aa4.86□□□□□ -1.63
VPS13A-206ENST00000376646 LMOD1P29536 600 aaPredicted RBP4.85□□□□□ -1.63
VPS13A-206ENST00000376646 SNRPNP63162 240 aaKnown RBP4.85□□□□□ -1.63
VPS13A-206ENST00000376646 CDCA8Q53HL2 280 aa4.85□□□□□ -1.63
VPS13A-206ENST00000376646 LRRC69Q6ZNQ3 347 aa4.85□□□□□ -1.63
VPS13A-206ENST00000376646 GGA1Q9UJY5 639 aa4.85□□□□□ -1.63
VPS13A-206ENST00000376646 NSFL1CQ9UNZ2 370 aaKnown RBP4.85□□□□□ -1.63
VPS13A-206ENST00000376646 EML1O00423 815 aa4.85□□□□□ -1.63
VPS13A-206ENST00000376646 OIP5O43482 229 aa4.85□□□□□ -1.63
VPS13A-206ENST00000376646 C21orf2O43822 256 aa4.85□□□□□ -1.63
VPS13A-206ENST00000376646 TNP2Q05952 138 aa4.85□□□□□ -1.63
VPS13A-206ENST00000376646 TEAD4Q15561 434 aa4.85□□□□□ -1.63
VPS13A-206ENST00000376646 KANK4Q5T7N3 995 aaPredicted RBP4.85□□□□□ -1.63
VPS13A-206ENST00000376646 LARGE2Q8N3Y3 721 aa4.85□□□□□ -1.63
VPS13A-206ENST00000376646 C1orf216Q8TAB5 229 aa4.85□□□□□ -1.63
VPS13A-206ENST00000376646 ZDHHC3Q9NYG2 299 aa4.85□□□□□ -1.63
VPS13A-206ENST00000376646 GJA3Q9Y6H8 435 aa4.85□□□□□ -1.63
VPS13A-206ENST00000376646 SERTM1A2A2V5 107 aa4.84□□□□□ -1.63
VPS13A-206ENST00000376646 MAP2K3P46734 347 aa4.84□□□□□ -1.63
VPS13A-206ENST00000376646 NLRP8Q86W28 1048 aa4.84□□□□□ -1.63
VPS13A-206ENST00000376646 SIX5Q8N196 739 aa4.84□□□□□ -1.63
VPS13A-206ENST00000376646 CHMP7Q8WUX9 453 aaPredicted RBP4.84□□□□□ -1.63
VPS13A-206ENST00000376646 C7orf43Q8WVR3 580 aa4.84□□□□□ -1.63
VPS13A-206ENST00000376646 HSH2DQ96JZ2 352 aa4.84□□□□□ -1.63
VPS13A-206ENST00000376646 NEURL1BA8MQ27 555 aa4.84□□□□□ -1.64
VPS13A-206ENST00000376646 FIGNL1Q6PIW4 674 aa4.84□□□□□ -1.64
VPS13A-206ENST00000376646 ENAMQ9NRM1 1142 aa4.84□□□□□ -1.64
VPS13A-206ENST00000376646 KLF15Q9UIH9 416 aa4.84□□□□□ -1.64
VPS13A-206ENST00000376646 PPP1R12BO60237 982 aaPredicted RBP4.83□□□□□ -1.64
VPS13A-206ENST00000376646 RFX1P22670 979 aa4.83□□□□□ -1.64
VPS13A-206ENST00000376646 PCBP4P57723 403 aaKnown RBP4.83□□□□□ -1.64
VPS13A-206ENST00000376646 DPYDQ12882 1025 aa4.83□□□□□ -1.64
VPS13A-206ENST00000376646 ZNF280CQ8ND82 737 aa4.83□□□□□ -1.64
VPS13A-206ENST00000376646 EDARADDQ8WWZ3 215 aa4.83□□□□□ -1.64
VPS13A-206ENST00000376646 PAX4O43316 350 aa4.83□□□□□ -1.64
VPS13A-206ENST00000376646 PTK7Q13308 1070 aa4.83□□□□□ -1.64
VPS13A-206ENST00000376646 CFAP70Q5T0N1 1121 aa4.83□□□□□ -1.64
VPS13A-206ENST00000376646 SCG3Q8WXD2 468 aaKnown RBP4.83□□□□□ -1.64
VPS13A-206ENST00000376646 NGLY1Q96IV0 654 aa4.83□□□□□ -1.64
VPS13A-206ENST00000376646 HINFPQ9BQA5 517 aa4.83□□□□□ -1.64
VPS13A-206ENST00000376646 PHACTR1Q9C0D0 580 aa4.83□□□□□ -1.64
VPS13A-206ENST00000376646 RRAGCQ9HB90 399 aa4.83□□□□□ -1.64
VPS13A-206ENST00000376646 PSMA6P60900 246 aaKnown RBP4.82□□□□□ -1.64
VPS13A-206ENST00000376646 RHPN1Q8TCX5 695 aa4.82□□□□□ -1.64
VPS13A-206ENST00000376646 SCARF2Q96GP6 870 aaPredicted RBP4.82□□□□□ -1.64
VPS13A-206ENST00000376646 USP17L15C9J2P7 530 aa4.81□□□□□ -1.64
VPS13A-206ENST00000376646 USP17L10C9JJH3 530 aa4.81□□□□□ -1.64
VPS13A-206ENST00000376646 USP17L13C9JLJ4 530 aa4.81□□□□□ -1.64
VPS13A-206ENST00000376646 USP17L12C9JPN9 530 aa4.81□□□□□ -1.64
VPS13A-206ENST00000376646 USP17L11C9JVI0 530 aa4.81□□□□□ -1.64
VPS13A-206ENST00000376646 USP17L21D6R901 530 aa4.81□□□□□ -1.64
VPS13A-206ENST00000376646 USP17L18D6R9N7 530 aa4.81□□□□□ -1.64
VPS13A-206ENST00000376646 USP17L22D6RA61 530 aa4.81□□□□□ -1.64
VPS13A-206ENST00000376646 USP17L17D6RBQ6 530 aa4.81□□□□□ -1.64
VPS13A-206ENST00000376646 USP17L19D6RCP7 530 aa4.81□□□□□ -1.64
VPS13A-206ENST00000376646 USP17L20D6RJB6 530 aa4.81□□□□□ -1.64
VPS13A-206ENST00000376646 SEC13P55735 322 aa4.81□□□□□ -1.64
VPS13A-206ENST00000376646 USP17L24Q0WX57 530 aa4.81□□□□□ -1.64
VPS13A-206ENST00000376646 SFSWAPQ12872 951 aaKnown RBP4.81□□□□□ -1.64
VPS13A-206ENST00000376646 LARP1Q6PKG0 1096 aaKnown RBP4.81□□□□□ -1.64
VPS13A-206ENST00000376646 RAB44Q7Z6P3 723 aaPredicted RBP4.81□□□□□ -1.64
VPS13A-206ENST00000376646 RBM19Q9Y4C8 960 aaKnown RBP4.81□□□□□ -1.64
VPS13A-206ENST00000376646 ATAD2Q6PL18 1390 aa4.81□□□□□ -1.64
VPS13A-206ENST00000376646 EFSO43281 561 aa4.81□□□□□ -1.64
VPS13A-206ENST00000376646 FAM157BP0CG42 384 aa4.81□□□□□ -1.64
VPS13A-206ENST00000376646 HOXB4P17483 251 aaPredicted RBP4.81□□□□□ -1.64
VPS13A-206ENST00000376646 AMPD1P23109 780 aa4.81□□□□□ -1.64
VPS13A-206ENST00000376646 FCHSD1Q86WN1 690 aa4.81□□□□□ -1.64
VPS13A-206ENST00000376646 GOLGA6L1Q8N7Z2 621 aa4.81□□□□□ -1.64
VPS13A-206ENST00000376646 GDF2Q9UK05 429 aaPredicted RBP4.81□□□□□ -1.64
VPS13A-206ENST00000376646 M0R2N6 131 aa4.8□□□□□ -1.64
VPS13A-206ENST00000376646 EPXP11678 715 aa4.8□□□□□ -1.64
VPS13A-206ENST00000376646 SLCO4C1Q6ZQN7 724 aa4.8□□□□□ -1.64
VPS13A-206ENST00000376646 ALDH16A1Q8IZ83 802 aa4.8□□□□□ -1.64
VPS13A-206ENST00000376646 SPOCK3Q9BQ16 436 aa4.8□□□□□ -1.64
VPS13A-206ENST00000376646 VRTNQ9H8Y1 702 aa4.8□□□□□ -1.64
VPS13A-206ENST00000376646 MARK1Q9P0L2 795 aa4.8□□□□□ -1.64
VPS13A-206ENST00000376646 ARAFP10398 606 aa4.8□□□□□ -1.64
VPS13A-206ENST00000376646 ANKMY2Q8IV38 441 aa4.8□□□□□ -1.64
VPS13A-206ENST00000376646 BEND7Q8N7W2 519 aaPredicted RBP4.8□□□□□ -1.64
VPS13A-206ENST00000376646 ARXQ96QS3 562 aa4.8□□□□□ -1.64
VPS13A-206ENST00000376646 SLC30A3Q99726 388 aa4.8□□□□□ -1.64
VPS13A-206ENST00000376646 C2orf49Q9BVC5 232 aaPredicted RBP4.8□□□□□ -1.64
VPS13A-206ENST00000376646 NEUROD4Q9HD90 331 aa4.8□□□□□ -1.64
VPS13A-206ENST00000376646 PRR12Q9ULL5 1215 aa4.8□□□□□ -1.64
VPS13A-206ENST00000376646 SAMD5Q5TGI4 173 aa4.79□□□□□ -1.64
VPS13A-206ENST00000376646 POTEAQ6S8J7 498 aa4.79□□□□□ -1.64
VPS13A-206ENST00000376646 PODNQ7Z5L7 613 aa4.79□□□□□ -1.64
VPS13A-206ENST00000376646 SUSD3Q96L08 255 aa4.79□□□□□ -1.64
VPS13A-206ENST00000376646 CEP63Q96MT8 703 aa4.79□□□□□ -1.64
VPS13A-206ENST00000376646 SUV39H2Q9H5I1 410 aa4.79□□□□□ -1.64
VPS13A-206ENST00000376646 FAM196BA6NMK8 535 aa4.79□□□□□ -1.64
VPS13A-206ENST00000376646 ITGB2P05107 769 aa4.79□□□□□ -1.64
VPS13A-206ENST00000376646 COL8A1P27658 744 aa4.79□□□□□ -1.64
VPS13A-206ENST00000376646 DCAF5Q96JK2 942 aa4.79□□□□□ -1.64
VPS13A-206ENST00000376646 BTBD6Q96KE9 485 aa4.79□□□□□ -1.64
VPS13A-206ENST00000376646 LRRC4BQ9NT99 713 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms