RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 GTF2F1P35269 517 aaKnown RBP eCLIP15.85■□□□□ 0.13
COL4A1-201ENST00000375820 CCDC150Q8NCX0 1101 aa15.85■□□□□ 0.13
COL4A1-201ENST00000375820 GRM1Q13255 1194 aa15.85■□□□□ 0.13
COL4A1-201ENST00000375820 CCDC40Q4G0X9 1142 aa15.85■□□□□ 0.13
COL4A1-201ENST00000375820 ZNF287Q9HBT7 754 aa15.85■□□□□ 0.13
COL4A1-201ENST00000375820 SLC5A1P13866 664 aa15.85■□□□□ 0.13
COL4A1-201ENST00000375820 MICU3Q86XE3 530 aa15.85■□□□□ 0.13
COL4A1-201ENST00000375820 IQCA1Q86XH1 822 aa15.85■□□□□ 0.13
COL4A1-201ENST00000375820 MAATS1Q7Z4T9 603 aa15.85■□□□□ 0.13
COL4A1-201ENST00000375820 VPS36Q86VN1 386 aa15.85■□□□□ 0.13
COL4A1-201ENST00000375820 RGS22Q8NE09 1264 aa15.85■□□□□ 0.13
COL4A1-201ENST00000375820 IPO4Q8TEX9 1081 aaKnown RBP15.84■□□□□ 0.13
COL4A1-201ENST00000375820 SMC1AQ14683 1233 aaKnown RBP15.84■□□□□ 0.13
COL4A1-201ENST00000375820 SYCP3Q8IZU3 236 aa15.84■□□□□ 0.13
COL4A1-201ENST00000375820 FEZ1Q99689 392 aa15.84■□□□□ 0.13
COL4A1-201ENST00000375820 EMILIN1Q9Y6C2 1016 aa15.84■□□□□ 0.13
COL4A1-201ENST00000375820 YEATS4O95619 227 aa15.83■□□□□ 0.13
COL4A1-201ENST00000375820 TNPO1Q92973 898 aaKnown RBP15.83■□□□□ 0.13
COL4A1-201ENST00000375820 ZNF830Q96NB3 372 aaPredicted RBP15.83■□□□□ 0.13
COL4A1-201ENST00000375820 A0A087WZG4 1122 aa15.83■□□□□ 0.12
COL4A1-201ENST00000375820 CATIPQ7Z7H3 387 aa15.83■□□□□ 0.12
COL4A1-201ENST00000375820 C9orf84Q5VXU9 1444 aa15.83■□□□□ 0.12
COL4A1-201ENST00000375820 STAMBPO95630 424 aa15.83■□□□□ 0.12
COL4A1-201ENST00000375820 GPATCH11Q8N954 259 aa15.83■□□□□ 0.12
COL4A1-201ENST00000375820 LRRC2Q9BYS8 371 aa15.83■□□□□ 0.12
COL4A1-201ENST00000375820 MAP3K2Q9Y2U5 619 aa15.83■□□□□ 0.12
COL4A1-201ENST00000375820 PAFAH1B1P43034 410 aa15.83■□□□□ 0.12
COL4A1-201ENST00000375820 TMEM67Q5HYA8 995 aa15.83■□□□□ 0.12
COL4A1-201ENST00000375820 SLC26A6Q9BXS9 759 aa15.83■□□□□ 0.12
COL4A1-201ENST00000375820 JADE2Q9NQC1 790 aa15.83■□□□□ 0.12
COL4A1-201ENST00000375820 USO1O60763 962 aaKnown RBP15.82■□□□□ 0.12
COL4A1-201ENST00000375820 CIZ1Q9ULV3 898 aaPredicted RBP15.82■□□□□ 0.12
COL4A1-201ENST00000375820 MAP9Q49MG5 647 aa15.82■□□□□ 0.12
COL4A1-201ENST00000375820 GBP3Q9H0R5 595 aa15.82■□□□□ 0.12
COL4A1-201ENST00000375820 ANKRD18BA2A2Z9 1011 aa15.82■□□□□ 0.12
COL4A1-201ENST00000375820 GCOM1H8Y6P7 765 aaPredicted RBP15.82■□□□□ 0.12
COL4A1-201ENST00000375820 ANXA1P04083 346 aa15.82■□□□□ 0.12
COL4A1-201ENST00000375820 MYZAPP0CAP1 466 aa15.82■□□□□ 0.12
COL4A1-201ENST00000375820 CTR9Q6PD62 1173 aa15.82■□□□□ 0.12
COL4A1-201ENST00000375820 IQSEC3Q9UPP2 1182 aaPredicted RBP15.82■□□□□ 0.12
COL4A1-201ENST00000375820 F8W031 263 aaPredicted RBP15.81■□□□□ 0.12
COL4A1-201ENST00000375820 USP16Q9Y5T5 823 aa15.81■□□□□ 0.12
COL4A1-201ENST00000375820 ADCY5O95622 1261 aa15.81■□□□□ 0.12
COL4A1-201ENST00000375820 ZNF354CQ86Y25 554 aa15.81■□□□□ 0.12
COL4A1-201ENST00000375820 BICD1Q96G01 975 aa15.81■□□□□ 0.12
COL4A1-201ENST00000375820 CCDC196A0A1B0GTZ2 297 aa15.81■□□□□ 0.12
COL4A1-201ENST00000375820 CGNQ9P2M7 1197 aaKnown RBP15.81■□□□□ 0.12
COL4A1-201ENST00000375820 TSPY2A6NKD2 308 aa15.81■□□□□ 0.12
COL4A1-201ENST00000375820 SCAND2PQ9GZW5 306 aaPredicted RBP15.81■□□□□ 0.12
COL4A1-201ENST00000375820 HOMER2Q9NSB8 354 aa15.81■□□□□ 0.12
COL4A1-201ENST00000375820 LMAN1P49257 510 aa15.8■□□□□ 0.12
COL4A1-201ENST00000375820 PAIP2Q9BPZ3 127 aaKnown RBP15.8■□□□□ 0.12
COL4A1-201ENST00000375820 AFMP43652 599 aa15.8■□□□□ 0.12
COL4A1-201ENST00000375820 NECAB1Q8N987 351 aa15.8■□□□□ 0.12
COL4A1-201ENST00000375820 ZNF622Q969S3 477 aaKnown RBP eCLIP15.8■□□□□ 0.12
COL4A1-201ENST00000375820 PPP4R3BQ5MIZ7 849 aa15.8■□□□□ 0.12
COL4A1-201ENST00000375820 RAB34Q9BZG1 259 aa15.8■□□□□ 0.12
COL4A1-201ENST00000375820 ZHX1Q9UKY1 873 aaPredicted RBP15.8■□□□□ 0.12
COL4A1-201ENST00000375820 LIMCH1Q9UPQ0 1083 aa15.8■□□□□ 0.12
COL4A1-201ENST00000375820 SMARCA4P51532 1647 aa15.8■□□□□ 0.12
COL4A1-201ENST00000375820 GJC1P36383 396 aa15.8■□□□□ 0.12
COL4A1-201ENST00000375820 DNAAF4Q8WXU2 420 aa15.8■□□□□ 0.12
COL4A1-201ENST00000375820 CALML4Q96GE6 196 aa15.8■□□□□ 0.12
COL4A1-201ENST00000375820 KIAA1107Q9UPP5 1409 aa15.8■□□□□ 0.12
COL4A1-201ENST00000375820 FOXO3O43524 673 aa15.79■□□□□ 0.12
COL4A1-201ENST00000375820 RARSP54136 660 aaKnown RBP15.79■□□□□ 0.12
COL4A1-201ENST00000375820 PRG4Q92954 1404 aaPredicted RBP15.79■□□□□ 0.12
COL4A1-201ENST00000375820 FAM83GA6ND36 823 aa15.79■□□□□ 0.12
COL4A1-201ENST00000375820 TCEANC2Q96MN5 208 aa15.79■□□□□ 0.12
COL4A1-201ENST00000375820 BAG4O95429 457 aaKnown RBP15.79■□□□□ 0.12
COL4A1-201ENST00000375820 TBC1D2Q9BYX2 928 aa15.79■□□□□ 0.12
COL4A1-201ENST00000375820 ARL1P40616 181 aaPredicted RBP15.79■□□□□ 0.12
COL4A1-201ENST00000375820 DPH6Q7L8W6 267 aa15.79■□□□□ 0.12
COL4A1-201ENST00000375820 KAT14Q9H8E8 782 aa15.78■□□□□ 0.12
COL4A1-201ENST00000375820 GIMAP6Q6P9H5 292 aa15.78■□□□□ 0.12
COL4A1-201ENST00000375820 FGFR1OPO95684 399 aaKnown RBP15.78■□□□□ 0.12
COL4A1-201ENST00000375820 CCDC175P0C221 793 aa15.78■□□□□ 0.12
COL4A1-201ENST00000375820 SMARCC1Q92922 1105 aaPredicted RBP15.78■□□□□ 0.12
COL4A1-201ENST00000375820 ALS2CR12Q96Q35 445 aa15.78■□□□□ 0.12
COL4A1-201ENST00000375820 FBLN1P23142 703 aa15.78■□□□□ 0.12
COL4A1-201ENST00000375820 TMEM110-MUSTN1A8MSY1 372 aa15.77■□□□□ 0.12
COL4A1-201ENST00000375820 KIF20AO95235 890 aa15.77■□□□□ 0.12
COL4A1-201ENST00000375820 METAP2P50579 478 aaKnown RBP eCLIP15.77■□□□□ 0.12
COL4A1-201ENST00000375820 CCDC12Q8WUD4 166 aaPredicted RBP15.77■□□□□ 0.12
COL4A1-201ENST00000375820 PHAXQ9H814 394 aaKnown RBP15.77■□□□□ 0.12
COL4A1-201ENST00000375820 IARSP41252 1262 aaKnown RBP15.77■□□□□ 0.12
COL4A1-201ENST00000375820 DNAI2Q9GZS0 605 aa15.77■□□□□ 0.12
COL4A1-201ENST00000375820 SH2B1Q9NRF2 756 aaPredicted RBP15.77■□□□□ 0.12
COL4A1-201ENST00000375820 APBB1IPQ7Z5R6 666 aaPredicted RBP15.77■□□□□ 0.11
COL4A1-201ENST00000375820 RRP9O43818 475 aaKnown RBP15.77■□□□□ 0.11
COL4A1-201ENST00000375820 SNW1Q13573 536 aaKnown RBP15.77■□□□□ 0.11
COL4A1-201ENST00000375820 TCP11L1Q9NUJ3 509 aa15.77■□□□□ 0.11
COL4A1-201ENST00000375820 PTGS1P23219 599 aa15.76■□□□□ 0.11
COL4A1-201ENST00000375820 AKNAD1Q5T1N1 836 aa15.76■□□□□ 0.11
COL4A1-201ENST00000375820 LDHAL6AQ6ZMR3 332 aa15.76■□□□□ 0.11
COL4A1-201ENST00000375820 STX1AQ16623 288 aa15.76■□□□□ 0.11
COL4A1-201ENST00000375820 ORC3Q9UBD5 711 aaPredicted RBP15.76■□□□□ 0.11
COL4A1-201ENST00000375820 STX6O43752 255 aa15.76■□□□□ 0.11
COL4A1-201ENST00000375820 TBC1D9Q6ZT07 1266 aa15.76■□□□□ 0.11
COL4A1-201ENST00000375820 SYNJ2O15056 1496 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms