RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 STX1AQ16623 288 aa13.68□□□□□ -0.22
PTPN1-201ENST00000371621 ODF2Q5BJF6 829 aa13.68□□□□□ -0.22
PTPN1-201ENST00000371621 ZNF622Q969S3 477 aaKnown RBP eCLIP13.68□□□□□ -0.221e-6■□□□□ 11
PTPN1-201ENST00000371621 NUP153P49790 1475 aaKnown RBP13.68□□□□□ -0.22
PTPN1-201ENST00000371621 UBTFL1P0CB47 393 aaPredicted RBP13.68□□□□□ -0.22
PTPN1-201ENST00000371621 NBPF11Q86T75 865 aa13.68□□□□□ -0.22
PTPN1-201ENST00000371621 CCAR1Q8IX12 1150 aaKnown RBP13.68□□□□□ -0.22
PTPN1-201ENST00000371621 OTUD6BQ8N6M0 293 aa13.68□□□□□ -0.22
PTPN1-201ENST00000371621 FSD1Q9BTV5 496 aa13.68□□□□□ -0.22
PTPN1-201ENST00000371621 SYNJ2O15056 1496 aa13.67□□□□□ -0.22
PTPN1-201ENST00000371621 KIF5CO60282 957 aa13.67□□□□□ -0.22
PTPN1-201ENST00000371621 SLC24A3Q9HC58 644 aa13.67□□□□□ -0.22
PTPN1-201ENST00000371621 MIS18AQ9NYP9 233 aa13.67□□□□□ -0.22
PTPN1-201ENST00000371621 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.67□□□□□ -0.225e-13■■□□□ 12.3
PTPN1-201ENST00000371621 ST5P78524 1137 aa13.67□□□□□ -0.22
PTPN1-201ENST00000371621 GBP3Q9H0R5 595 aa13.67□□□□□ -0.22
PTPN1-201ENST00000371621 TROQ12816 1431 aaPredicted RBP13.67□□□□□ -0.22
PTPN1-201ENST00000371621 AK2P54819 239 aa13.67□□□□□ -0.22
PTPN1-201ENST00000371621 EIF4G3O43432 1585 aaKnown RBP13.67□□□□□ -0.22
PTPN1-201ENST00000371621 SPATA31E1Q6ZUB1 1445 aa13.66□□□□□ -0.22
PTPN1-201ENST00000371621 ECM2O94769 699 aaPredicted RBP13.66□□□□□ -0.22
PTPN1-201ENST00000371621 GSPT1P15170 499 aaKnown RBP13.66□□□□□ -0.22
PTPN1-201ENST00000371621 GOLGA5Q8TBA6 731 aa13.66□□□□□ -0.22
PTPN1-201ENST00000371621 TESK2Q96S53 571 aa13.66□□□□□ -0.22
PTPN1-201ENST00000371621 NCAPGQ9BPX3 1015 aa13.66□□□□□ -0.22
PTPN1-201ENST00000371621 ESYT1Q9BSJ8 1104 aa13.66□□□□□ -0.22
PTPN1-201ENST00000371621 HOOK1Q9UJC3 728 aaKnown RBP13.66□□□□□ -0.22
PTPN1-201ENST00000371621 ABCC5O15440 1437 aa13.66□□□□□ -0.22
PTPN1-201ENST00000371621 MATR3P43243 847 aaKnown RBP eCLIP13.66□□□□□ -0.221e-6■■■■□ 23.9
PTPN1-201ENST00000371621 ANKRD7Q92527 254 aa13.66□□□□□ -0.22
PTPN1-201ENST00000371621 JPH2Q9BR39 696 aaPredicted RBP13.66□□□□□ -0.22
PTPN1-201ENST00000371621 DISP1Q96F81 1524 aa13.66□□□□□ -0.22
PTPN1-201ENST00000371621 EPB41L2O43491 1005 aaKnown RBP13.65□□□□□ -0.22
PTPN1-201ENST00000371621 PDE1AP54750 535 aa13.65□□□□□ -0.22
PTPN1-201ENST00000371621 KLHL10Q6JEL2 608 aa13.65□□□□□ -0.22
PTPN1-201ENST00000371621 CLASRPQ8N2M8 674 aaKnown RBP13.65□□□□□ -0.22
PTPN1-201ENST00000371621 DYDC1Q8WWB3 177 aa13.65□□□□□ -0.22
PTPN1-201ENST00000371621 ZMYM4Q5VZL5 1548 aa13.65□□□□□ -0.22
PTPN1-201ENST00000371621 NSD3Q9BZ95 1437 aa13.65□□□□□ -0.22
PTPN1-201ENST00000371621 ATRIPQ8WXE1 791 aa13.65□□□□□ -0.22
PTPN1-201ENST00000371621 GOLGA1Q92805 767 aa13.65□□□□□ -0.22
PTPN1-201ENST00000371621 ZSCAN31Q96LW9 406 aaPredicted RBP13.65□□□□□ -0.22
PTPN1-201ENST00000371621 C9orf78Q9NZ63 289 aaPredicted RBP13.65□□□□□ -0.22
PTPN1-201ENST00000371621 DNA2P51530 1060 aa13.65□□□□□ -0.22
PTPN1-201ENST00000371621 UBASH3AP57075 661 aa13.65□□□□□ -0.22
PTPN1-201ENST00000371621 LRRC8AQ8IWT6 810 aa13.65□□□□□ -0.22
PTPN1-201ENST00000371621 ZNF396Q96N95 335 aaPredicted RBP13.65□□□□□ -0.22
PTPN1-201ENST00000371621 MEIS3Q99687 375 aa13.65□□□□□ -0.22
PTPN1-201ENST00000371621 PDE11AQ9HCR9 933 aa13.65□□□□□ -0.22
PTPN1-201ENST00000371621 MPHOSPH10O00566 681 aaKnown RBP13.64□□□□□ -0.23
PTPN1-201ENST00000371621 FBLN1P23142 703 aa13.64□□□□□ -0.23
PTPN1-201ENST00000371621 INPP5BP32019 993 aa13.64□□□□□ -0.23
PTPN1-201ENST00000371621 CPSF2Q9P2I0 782 aaKnown RBP13.64□□□□□ -0.23
PTPN1-201ENST00000371621 TSPYL4Q9UJ04 414 aa13.64□□□□□ -0.23
PTPN1-201ENST00000371621 PALD1Q9ULE6 856 aa13.64□□□□□ -0.23
PTPN1-201ENST00000371621 USP27XA6NNY8 438 aa13.64□□□□□ -0.23
PTPN1-201ENST00000371621 ACTN2P35609 894 aa13.64□□□□□ -0.23
PTPN1-201ENST00000371621 ZDHHC9Q9Y397 364 aa13.64□□□□□ -0.23
PTPN1-201ENST00000371621 GOLGA6L7A0A1B0GV03 622 aa13.64□□□□□ -0.23
PTPN1-201ENST00000371621 CCDC172P0C7W6 258 aa13.64□□□□□ -0.23
PTPN1-201ENST00000371621 CLNS1AP54105 237 aaKnown RBP13.64□□□□□ -0.23
PTPN1-201ENST00000371621 SF3A3Q12874 501 aaKnown RBP eCLIP13.64□□□□□ -0.237e-9■■□□□ 12
PTPN1-201ENST00000371621 TSPYL6Q8N831 410 aa13.64□□□□□ -0.23
PTPN1-201ENST00000371621 HINFPQ9BQA5 517 aa13.64□□□□□ -0.23
PTPN1-201ENST00000371621 WDR62O43379 1518 aa13.64□□□□□ -0.23
PTPN1-201ENST00000371621 CBFA2T2O43439 604 aa13.63□□□□□ -0.23
PTPN1-201ENST00000371621 WDHD1O75717 1129 aaPredicted RBP13.63□□□□□ -0.23
PTPN1-201ENST00000371621 ATP2B2Q01814 1243 aa13.63□□□□□ -0.23
PTPN1-201ENST00000371621 KCNF1Q9H3M0 494 aa13.63□□□□□ -0.23
PTPN1-201ENST00000371621 SPTLC3Q9NUV7 552 aa13.63□□□□□ -0.23
PTPN1-201ENST00000371621 ADAM21Q9UKJ8 722 aa13.63□□□□□ -0.23
PTPN1-201ENST00000371621 MAGI1Q96QZ7 1491 aaPredicted RBP13.63□□□□□ -0.23
PTPN1-201ENST00000371621 CYP2C19P33261 490 aa13.63□□□□□ -0.23
PTPN1-201ENST00000371621 CCDC150Q8NCX0 1101 aa13.63□□□□□ -0.23
PTPN1-201ENST00000371621 INTS4Q96HW7 963 aaKnown RBP13.63□□□□□ -0.23
PTPN1-201ENST00000371621 ESF1Q9H501 851 aaKnown RBP13.63□□□□□ -0.23
PTPN1-201ENST00000371621 TEFQ10587 303 aa13.63□□□□□ -0.23
PTPN1-201ENST00000371621 PTPN21Q16825 1174 aa13.63□□□□□ -0.23
PTPN1-201ENST00000371621 FAM160A1Q05DH4 1040 aa13.62□□□□□ -0.23
PTPN1-201ENST00000371621 CEP83Q9Y592 693 aa13.62□□□□□ -0.23
PTPN1-201ENST00000371621 SCAPERQ9BY12 1400 aa13.62□□□□□ -0.23
PTPN1-201ENST00000371621 SRGAP3O43295 1099 aa13.62□□□□□ -0.23
PTPN1-201ENST00000371621 POLR3DP05423 398 aaPredicted RBP13.62□□□□□ -0.23
PTPN1-201ENST00000371621 SLC3A2P08195 630 aaKnown RBP13.62□□□□□ -0.23
PTPN1-201ENST00000371621 CCT2P78371 535 aaKnown RBP13.62□□□□□ -0.23
PTPN1-201ENST00000371621 BIRC2Q13490 618 aa13.62□□□□□ -0.23
PTPN1-201ENST00000371621 HDXQ7Z353 690 aa13.62□□□□□ -0.23
PTPN1-201ENST00000371621 ZBTB7BO15156 539 aaPredicted RBP13.61□□□□□ -0.23
PTPN1-201ENST00000371621 KIF4AO95239 1232 aa13.61□□□□□ -0.23
PTPN1-201ENST00000371621 EZRP15311 586 aaKnown RBP13.61□□□□□ -0.23
PTPN1-201ENST00000371621 SSR1P43307 286 aaKnown RBP13.61□□□□□ -0.23
PTPN1-201ENST00000371621 KIF2CQ99661 725 aa13.61□□□□□ -0.23
PTPN1-201ENST00000371621 BCCIPQ9P287 314 aaKnown RBP eCLIP13.61□□□□□ -0.23
PTPN1-201ENST00000371621 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.61□□□□□ -0.23
PTPN1-201ENST00000371621 CAPN7Q9Y6W3 813 aa13.61□□□□□ -0.23
PTPN1-201ENST00000371621 KIAA0556O60303 1618 aa13.61□□□□□ -0.23
PTPN1-201ENST00000371621 EIF3CLB5ME19 914 aaKnown RBP13.61□□□□□ -0.23
PTPN1-201ENST00000371621 CCDC30Q5VVM6 783 aa13.61□□□□□ -0.23
PTPN1-201ENST00000371621 EIF3CQ99613 913 aaKnown RBP13.61□□□□□ -0.23
PTPN1-201ENST00000371621 LRRC2Q9BYS8 371 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms