RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 EXOSC9Q06265 439 aaKnown RBP19.5■□□□□ 0.71
SMPDL3A-201ENST00000368440 HLFQ16534 295 aa19.5■□□□□ 0.71
SMPDL3A-201ENST00000368440 PARP3Q9Y6F1 533 aa19.5■□□□□ 0.71
SMPDL3A-201ENST00000368440 KIAA1551Q9HCM1 1747 aa19.5■□□□□ 0.71
SMPDL3A-201ENST00000368440 TWISTNBQ3B726 338 aaPredicted RBP19.5■□□□□ 0.71
SMPDL3A-201ENST00000368440 GOLGA2Q08379 1002 aa19.49■□□□□ 0.71
SMPDL3A-201ENST00000368440 NLGN2Q8NFZ4 835 aa19.49■□□□□ 0.71
SMPDL3A-201ENST00000368440 MYH16Q9H6N6 1097 aa19.49■□□□□ 0.71
SMPDL3A-201ENST00000368440 MAP3K15Q6ZN16 1313 aa19.49■□□□□ 0.71
SMPDL3A-201ENST00000368440 XAGE3Q8WTP9 111 aa19.48■□□□□ 0.71
SMPDL3A-201ENST00000368440 CDCA7LQ96GN5 454 aa19.48■□□□□ 0.71
SMPDL3A-201ENST00000368440 ZBTB3Q9H5J0 574 aa19.48■□□□□ 0.71
SMPDL3A-201ENST00000368440 DBF4Q9UBU7 674 aaPredicted RBP19.48■□□□□ 0.71
SMPDL3A-201ENST00000368440 C10orf71Q711Q0 1435 aa19.48■□□□□ 0.71
SMPDL3A-201ENST00000368440 AIMP1Q12904 312 aaKnown RBP19.48■□□□□ 0.71
SMPDL3A-201ENST00000368440 KIF6Q6ZMV9 814 aa19.48■□□□□ 0.71
SMPDL3A-201ENST00000368440 COPS6Q7L5N1 327 aa19.48■□□□□ 0.71
SMPDL3A-201ENST00000368440 ANKRD36CQ5JPF3 1778 aa19.47■□□□□ 0.71
SMPDL3A-201ENST00000368440 N4BP2Q86UW6 1770 aaPredicted RBP19.47■□□□□ 0.71
SMPDL3A-201ENST00000368440 TCERG1O14776 1098 aaKnown RBP19.47■□□□□ 0.71
SMPDL3A-201ENST00000368440 ARFGEF2Q9Y6D5 1785 aa19.46■□□□□ 0.71
SMPDL3A-201ENST00000368440 HNRNPUQ00839 825 aaKnown RBP eCLIP19.45■□□□□ 0.7
SMPDL3A-201ENST00000368440 SLFN5Q08AF3 891 aa19.45■□□□□ 0.7
SMPDL3A-201ENST00000368440 CLEC4GQ6UXB4 293 aa19.45■□□□□ 0.7
SMPDL3A-201ENST00000368440 ZNF652Q9Y2D9 606 aa19.45■□□□□ 0.7
SMPDL3A-201ENST00000368440 ANKRD31Q8N7Z5 1873 aa19.45■□□□□ 0.7
SMPDL3A-201ENST00000368440 ERVV-1B6SEH8 477 aa19.45■□□□□ 0.7
SMPDL3A-201ENST00000368440 SERPINB2P05120 415 aa19.45■□□□□ 0.7
SMPDL3A-201ENST00000368440 CCDC30Q5VVM6 783 aa19.45■□□□□ 0.7
SMPDL3A-201ENST00000368440 PHAXQ9H814 394 aaKnown RBP19.45■□□□□ 0.7
SMPDL3A-201ENST00000368440 CD2APQ9Y5K6 639 aa19.45■□□□□ 0.7
SMPDL3A-201ENST00000368440 CARMIL3Q8ND23 1372 aa19.45■□□□□ 0.7
SMPDL3A-201ENST00000368440 E9PSI1 815 aa19.44■□□□□ 0.7
SMPDL3A-201ENST00000368440 VAMP4O75379 141 aa19.44■□□□□ 0.7
SMPDL3A-201ENST00000368440 HYPKQ9NX55 129 aa19.43■□□□□ 0.7
SMPDL3A-201ENST00000368440 ATP10DQ9P241 1426 aa19.43■□□□□ 0.7
SMPDL3A-201ENST00000368440 RGL2O15211 777 aa19.43■□□□□ 0.7
SMPDL3A-201ENST00000368440 SETDB2Q96T68 719 aa19.43■□□□□ 0.7
SMPDL3A-201ENST00000368440 NIP7Q9Y221 180 aaKnown RBP eCLIP19.43■□□□□ 0.7
SMPDL3A-201ENST00000368440 PXDNLA1KZ92 1463 aa19.42■□□□□ 0.7
SMPDL3A-201ENST00000368440 GIGYF2Q6Y7W6 1299 aaKnown RBP19.42■□□□□ 0.7
SMPDL3A-201ENST00000368440 TRMT2AQ8IZ69 625 aaKnown RBP19.41■□□□□ 0.7
SMPDL3A-201ENST00000368440 CCDC24Q8N4L8 307 aa19.41■□□□□ 0.7
SMPDL3A-201ENST00000368440 UBN2Q6ZU65 1347 aa19.41■□□□□ 0.7
SMPDL3A-201ENST00000368440 GPTP24298 496 aa19.41■□□□□ 0.7
SMPDL3A-201ENST00000368440 BRCA1P38398 1863 aaKnown RBP19.4■□□□□ 0.7
SMPDL3A-201ENST00000368440 FAM177BA6PVY3 158 aa19.4■□□□□ 0.7
SMPDL3A-201ENST00000368440 PRR5LQ6MZQ0 368 aa19.4■□□□□ 0.7
SMPDL3A-201ENST00000368440 CACNA1FO60840 1977 aa19.4■□□□□ 0.7
SMPDL3A-201ENST00000368440 G2E3Q7L622 706 aa19.39■□□□□ 0.7
SMPDL3A-201ENST00000368440 STK31Q9BXU1 1019 aa19.39■□□□□ 0.7
SMPDL3A-201ENST00000368440 COL11A2P13942 1736 aaPredicted RBP19.39■□□□□ 0.69
SMPDL3A-201ENST00000368440 ANKRD13DQ6ZTN6 518 aa19.39■□□□□ 0.69
SMPDL3A-201ENST00000368440 ZNF34Q8IZ26 560 aa19.39■□□□□ 0.69
SMPDL3A-201ENST00000368440 PLBD2Q8NHP8 589 aa19.39■□□□□ 0.69
SMPDL3A-201ENST00000368440 DLEC1Q9Y238 1755 aa19.38■□□□□ 0.69
SMPDL3A-201ENST00000368440 SLC4A2P04920 1241 aa19.38■□□□□ 0.69
SMPDL3A-201ENST00000368440 CHMP4AQ9BY43 222 aa19.38■□□□□ 0.69
SMPDL3A-201ENST00000368440 WWC3Q9ULE0 1092 aa19.38■□□□□ 0.69
SMPDL3A-201ENST00000368440 TNRC6CQ9HCJ0 1690 aaKnown RBP19.37■□□□□ 0.69
SMPDL3A-201ENST00000368440 NBPF5PQ86XG9 351 aaPredicted RBP19.37■□□□□ 0.69
SMPDL3A-201ENST00000368440 CNBD1Q8NA66 436 aa19.37■□□□□ 0.69
SMPDL3A-201ENST00000368440 GOLGB1Q14789 3259 aaKnown RBP19.37■□□□□ 0.69
SMPDL3A-201ENST00000368440 A0A0G2JLW4 131 aa19.37■□□□□ 0.69
SMPDL3A-201ENST00000368440 DPEP1P16444 411 aa19.36■□□□□ 0.69
SMPDL3A-201ENST00000368440 SUSD4Q5VX71 490 aa19.36■□□□□ 0.69
SMPDL3A-201ENST00000368440 CHRNA5P30532 468 aa19.35■□□□□ 0.69
SMPDL3A-201ENST00000368440 TGFB2P61812 414 aa19.35■□□□□ 0.69
SMPDL3A-201ENST00000368440 TCIRG1Q13488 830 aa19.35■□□□□ 0.69
SMPDL3A-201ENST00000368440 ZNF428Q96B54 188 aa19.35■□□□□ 0.69
SMPDL3A-201ENST00000368440 NPHP1O15259 732 aa19.35■□□□□ 0.69
SMPDL3A-201ENST00000368440 RIC3Q7Z5B4 369 aa19.35■□□□□ 0.69
SMPDL3A-201ENST00000368440 KCNA3P22001 575 aa19.34■□□□□ 0.69
SMPDL3A-201ENST00000368440 NUTM1Q86Y26 1132 aa19.34■□□□□ 0.69
SMPDL3A-201ENST00000368440 PELP1Q8IZL8 1130 aaKnown RBP19.34■□□□□ 0.69
SMPDL3A-201ENST00000368440 ADCY9O60503 1353 aa19.34■□□□□ 0.69
SMPDL3A-201ENST00000368440 ABCC12Q96J65 1359 aa19.34■□□□□ 0.69
SMPDL3A-201ENST00000368440 ZBED9Q6R2W3 1325 aa19.34■□□□□ 0.69
SMPDL3A-201ENST00000368440 ATP5J2-PTCD1G3V325 749 aa19.33■□□□□ 0.69
SMPDL3A-201ENST00000368440 NTSR2O95665 410 aa19.33■□□□□ 0.69
SMPDL3A-201ENST00000368440 ST5P78524 1137 aa19.33■□□□□ 0.69
SMPDL3A-201ENST00000368440 FLIIQ13045 1269 aa19.33■□□□□ 0.69
SMPDL3A-201ENST00000368440 HSP90AB3PQ58FF7 597 aa19.33■□□□□ 0.69
SMPDL3A-201ENST00000368440 NLRP10Q86W26 655 aa19.33■□□□□ 0.69
SMPDL3A-201ENST00000368440 IBTKQ9P2D0 1353 aaPredicted RBP19.33■□□□□ 0.68
SMPDL3A-201ENST00000368440 YBX3P16989 372 aaKnown RBP eCLIP19.33■□□□□ 0.68
SMPDL3A-201ENST00000368440 TPTE2Q6XPS3 522 aa19.33■□□□□ 0.68
SMPDL3A-201ENST00000368440 CACNA1SQ13698 1873 aa19.32■□□□□ 0.68
SMPDL3A-201ENST00000368440 ERFEQ4G0M1 354 aa19.32■□□□□ 0.68
SMPDL3A-201ENST00000368440 PARP10Q53GL7 1025 aa19.32■□□□□ 0.68
SMPDL3A-201ENST00000368440 ISCA1Q9BUE6 129 aa19.32■□□□□ 0.68
SMPDL3A-201ENST00000368440 BRIP1Q9BX63 1249 aa19.32■□□□□ 0.68
SMPDL3A-201ENST00000368440 MAP3K2Q9Y2U5 619 aa19.32■□□□□ 0.68
SMPDL3A-201ENST00000368440 PI4KAP2A4QPH2 592 aa19.31■□□□□ 0.68
SMPDL3A-201ENST00000368440 DDX58O95786 925 aaKnown RBP19.31■□□□□ 0.68
SMPDL3A-201ENST00000368440 PI4KAP1Q8N8J0 262 aa19.31■□□□□ 0.68
SMPDL3A-201ENST00000368440 MYD88Q99836 296 aa19.31■□□□□ 0.68
SMPDL3A-201ENST00000368440 LAMB2P55268 1798 aa19.31■□□□□ 0.68
SMPDL3A-201ENST00000368440 KSR2Q6VAB6 950 aa19.31■□□□□ 0.68
SMPDL3A-201ENST00000368440 DDX60Q8IY21 1712 aaKnown RBP19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms