RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 NOL8Q76FK4 1167 aaKnown RBP17.23■□□□□ 0.35
CD48-201ENST00000368045 ANKRD24Q8TF21 1146 aa17.23■□□□□ 0.35
CD48-201ENST00000368045 FOXD4L4Q8WXT5 416 aaPredicted RBP17.23■□□□□ 0.35
CD48-201ENST00000368045 PXDNQ92626 1479 aa17.22■□□□□ 0.35
CD48-201ENST00000368045 MST1RQ04912 1400 aa17.22■□□□□ 0.35
CD48-201ENST00000368045 ADAMTS7Q9UKP4 1686 aa17.21■□□□□ 0.35
CD48-201ENST00000368045 SYCE3A1L190 88 aa17.21■□□□□ 0.35
CD48-201ENST00000368045 ZBTB7CA1YPR0 619 aa17.21■□□□□ 0.35
CD48-201ENST00000368045 IFIT2P09913 472 aaKnown RBP17.21■□□□□ 0.35
CD48-201ENST00000368045 EVI5LQ96CN4 794 aa17.21■□□□□ 0.35
CD48-201ENST00000368045 RPAP1Q9BWH6 1393 aaPredicted RBP17.2■□□□□ 0.34
CD48-201ENST00000368045 ANXA1P04083 346 aa17.2■□□□□ 0.34
CD48-201ENST00000368045 MSNP26038 577 aaKnown RBP17.2■□□□□ 0.34
CD48-201ENST00000368045 CWC27Q6UX04 472 aaKnown RBP17.2■□□□□ 0.34
CD48-201ENST00000368045 ZSCAN31Q96LW9 406 aaPredicted RBP17.2■□□□□ 0.34
CD48-201ENST00000368045 DDX21Q9NR30 783 aaKnown RBP eCLIP17.2■□□□□ 0.34
CD48-201ENST00000368045 NSFL1CQ9UNZ2 370 aaKnown RBP17.2■□□□□ 0.34
CD48-201ENST00000368045 ATP6V1DQ9Y5K8 247 aa17.2■□□□□ 0.34
CD48-201ENST00000368045 MCM5P33992 734 aa17.2■□□□□ 0.34
CD48-201ENST00000368045 AK2P54819 239 aa17.2■□□□□ 0.34
CD48-201ENST00000368045 VPS53Q5VIR6 699 aa17.2■□□□□ 0.34
CD48-201ENST00000368045 RASEFQ8IZ41 740 aa17.2■□□□□ 0.34
CD48-201ENST00000368045 TSPY26PQ9H489 355 aa17.2■□□□□ 0.34
CD48-201ENST00000368045 SH2B1Q9NRF2 756 aaPredicted RBP17.2■□□□□ 0.34
CD48-201ENST00000368045 NOL7Q9UMY1 257 aaKnown RBP17.2■□□□□ 0.34
CD48-201ENST00000368045 GRM8O00222 908 aa17.19■□□□□ 0.34
CD48-201ENST00000368045 ZSCAN22P10073 491 aaPredicted RBP17.19■□□□□ 0.34
CD48-201ENST00000368045 RUFY3Q7L099 469 aa17.19■□□□□ 0.34
CD48-201ENST00000368045 CHAMP1Q96JM3 812 aa17.19■□□□□ 0.34
CD48-201ENST00000368045 NPHP4O75161 1426 aaPredicted RBP17.19■□□□□ 0.34
CD48-201ENST00000368045 PLEKHG2Q9H7P9 1386 aa17.18■□□□□ 0.34
CD48-201ENST00000368045 PDIA4P13667 645 aaKnown RBP17.18■□□□□ 0.34
CD48-201ENST00000368045 PROSER3Q2NL68 480 aa17.18■□□□□ 0.34
CD48-201ENST00000368045 SNRKQ9NRH2 765 aa17.18■□□□□ 0.34
CD48-201ENST00000368045 RGPD2P0DJD1 1756 aa17.18■□□□□ 0.34
CD48-201ENST00000368045 LETM1O95202 739 aaPredicted RBP17.17■□□□□ 0.34
CD48-201ENST00000368045 USP48Q86UV5 1035 aa17.17■□□□□ 0.34
CD48-201ENST00000368045 SMC3Q9UQE7 1217 aa17.17■□□□□ 0.34
CD48-201ENST00000368045 SIPA1L3O60292 1781 aaPredicted RBP17.17■□□□□ 0.34
CD48-201ENST00000368045 STX6O43752 255 aa17.17■□□□□ 0.34
CD48-201ENST00000368045 TPM2P07951 284 aa17.17■□□□□ 0.34
CD48-201ENST00000368045 G3BP1Q13283 466 aaKnown RBP eCLIP17.17■□□□□ 0.34
CD48-201ENST00000368045 CSPP1Q1MSJ5 1256 aa17.17■□□□□ 0.34
CD48-201ENST00000368045 FAM184AQ8NB25 1140 aa17.17■□□□□ 0.34
CD48-201ENST00000368045 ZSWIM6Q9HCJ5 1215 aa17.17■□□□□ 0.34
CD48-201ENST00000368045 CCDC39Q9UFE4 941 aa17.17■□□□□ 0.34
CD48-201ENST00000368045 SPG7Q9UQ90 795 aa17.17■□□□□ 0.34
CD48-201ENST00000368045 CYP46A1Q9Y6A2 500 aa17.17■□□□□ 0.34
CD48-201ENST00000368045 ZNF500O60304 480 aaPredicted RBP17.16■□□□□ 0.34
CD48-201ENST00000368045 OFD1O75665 1012 aa17.16■□□□□ 0.34
CD48-201ENST00000368045 CASTP20810 708 aaKnown RBP17.16■□□□□ 0.34
CD48-201ENST00000368045 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.16■□□□□ 0.34
CD48-201ENST00000368045 AACSQ86V21 672 aa17.16■□□□□ 0.34
CD48-201ENST00000368045 SUCLG2Q96I99 432 aa17.16■□□□□ 0.34
CD48-201ENST00000368045 PDRG1Q9NUG6 133 aa17.16■□□□□ 0.34
CD48-201ENST00000368045 CCDC171Q6TFL3 1326 aa17.16■□□□□ 0.34
CD48-201ENST00000368045 ZKSCAN1P17029 563 aaPredicted RBP17.15■□□□□ 0.34
CD48-201ENST00000368045 TERF1P54274 439 aa17.15■□□□□ 0.34
CD48-201ENST00000368045 LARP1Q6PKG0 1096 aaKnown RBP17.15■□□□□ 0.34
CD48-201ENST00000368045 ORAI2Q96SN7 254 aa17.15■□□□□ 0.34
CD48-201ENST00000368045 KIF1AQ12756 1690 aa17.15■□□□□ 0.34
CD48-201ENST00000368045 ABCC6O95255 1503 aa17.15■□□□□ 0.34
CD48-201ENST00000368045 TRPM3Q9HCF6 1732 aaPredicted RBP17.15■□□□□ 0.34
CD48-201ENST00000368045 SYT1P21579 422 aa17.15■□□□□ 0.34
CD48-201ENST00000368045 UBE2HP62256 183 aa17.15■□□□□ 0.34
CD48-201ENST00000368045 NECTIN1Q15223 517 aa17.15■□□□□ 0.34
CD48-201ENST00000368045 CWF19L2Q2TBE0 894 aaKnown RBP17.15■□□□□ 0.34
CD48-201ENST00000368045 UVSSAQ2YD98 709 aa17.15■□□□□ 0.34
CD48-201ENST00000368045 CCDC183Q5T5S1 534 aa17.15■□□□□ 0.34
CD48-201ENST00000368045 RBM33Q96EV2 1170 aaKnown RBP17.15■□□□□ 0.34
CD48-201ENST00000368045 MRC1P22897 1456 aa17.14■□□□□ 0.33
CD48-201ENST00000368045 F13A1P00488 732 aa17.14■□□□□ 0.33
CD48-201ENST00000368045 PTH1RQ03431 593 aa17.14■□□□□ 0.33
CD48-201ENST00000368045 PDIA6Q15084 440 aa17.14■□□□□ 0.33
CD48-201ENST00000368045 KAZALD1Q96I82 304 aa17.14■□□□□ 0.33
CD48-201ENST00000368045 JAKMIP1Q96N16 626 aaKnown RBP17.14■□□□□ 0.33
CD48-201ENST00000368045 PA2G4Q9UQ80 394 aaKnown RBP17.14■□□□□ 0.33
CD48-201ENST00000368045 ERBB3P21860 1342 aa17.13■□□□□ 0.33
CD48-201ENST00000368045 GADD45BO75293 160 aaPredicted RBP17.13■□□□□ 0.33
CD48-201ENST00000368045 PSMA5P28066 241 aa17.13■□□□□ 0.33
CD48-201ENST00000368045 NEXNQ0ZGT2 675 aa17.13■□□□□ 0.33
CD48-201ENST00000368045 PRPF40BQ6NWY9 871 aaKnown RBP17.13■□□□□ 0.33
CD48-201ENST00000368045 KRT28Q7Z3Y7 464 aa17.13■□□□□ 0.33
CD48-201ENST00000368045 BICC1Q9H694 974 aaKnown RBP17.13■□□□□ 0.33
CD48-201ENST00000368045 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.13■□□□□ 0.33
CD48-201ENST00000368045 ZKSCAN5Q9Y2L8 839 aa17.13■□□□□ 0.33
CD48-201ENST00000368045 SASH1O94885 1247 aa17.12■□□□□ 0.33
CD48-201ENST00000368045 MAP4K1Q92918 833 aa17.12■□□□□ 0.33
CD48-201ENST00000368045 ZNF790Q6PG37 636 aa17.12■□□□□ 0.33
CD48-201ENST00000368045 RAPGEF4Q8WZA2 1011 aa17.12■□□□□ 0.33
CD48-201ENST00000368045 ALDH8A1Q9H2A2 487 aaPredicted RBP17.12■□□□□ 0.33
CD48-201ENST00000368045 SLC52A2Q9HAB3 445 aa17.12■□□□□ 0.33
CD48-201ENST00000368045 AXIN2Q9Y2T1 843 aa17.12■□□□□ 0.33
CD48-201ENST00000368045 COL15A1P39059 1388 aa17.11■□□□□ 0.33
CD48-201ENST00000368045 ANKRD1Q15327 319 aa17.11■□□□□ 0.33
CD48-201ENST00000368045 RNF20Q5VTR2 975 aa17.11■□□□□ 0.33
CD48-201ENST00000368045 CREB3L3Q68CJ9 461 aa17.11■□□□□ 0.33
CD48-201ENST00000368045 RIC3Q7Z5B4 369 aa17.11■□□□□ 0.33
CD48-201ENST00000368045 EAF2Q96CJ1 260 aaPredicted RBP17.11■□□□□ 0.33
CD48-201ENST00000368045 RBM8AQ9Y5S9 174 aaKnown RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms