RNA–Protein interactions for RNA: ENST00000368019.5

USF1-201, Transcript of upstream transcription factor 1, humanhuman

TSL 5 BASIC

Gene USF1, Length 998 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-201ENST00000368019 ZNF526Q8TF50 670 aaPredicted RBP14.38□□□□□ -0.11
USF1-201ENST00000368019 SNX21Q969T3 373 aa14.38□□□□□ -0.11
USF1-201ENST00000368019 PNNQ9H307 717 aaKnown RBP14.38□□□□□ -0.11
USF1-201ENST00000368019 CHMP4BQ9H444 224 aaKnown RBP14.38□□□□□ -0.11
USF1-201ENST00000368019 KIF3CO14782 793 aa14.37□□□□□ -0.11
USF1-201ENST00000368019 PTCD1O75127 700 aaKnown RBP14.37□□□□□ -0.11
USF1-201ENST00000368019 KCNA3P22001 575 aa14.37□□□□□ -0.11
USF1-201ENST00000368019 MCM4P33991 863 aa14.37□□□□□ -0.11
USF1-201ENST00000368019 CRKLP46109 303 aaKnown RBP14.37□□□□□ -0.11
USF1-201ENST00000368019 DPEP1P16444 411 aa14.36□□□□□ -0.11
USF1-201ENST00000368019 INTS5Q6P9B9 1019 aaKnown RBP14.36□□□□□ -0.11
USF1-201ENST00000368019 C22orf23Q9BZE7 217 aa14.36□□□□□ -0.11
USF1-201ENST00000368019 CCDC87Q9NVE4 849 aa14.36□□□□□ -0.11
USF1-201ENST00000368019 GOLGA6L3A6NEY3 463 aa14.35□□□□□ -0.11
USF1-201ENST00000368019 HSPA6P17066 643 aa14.35□□□□□ -0.11
USF1-201ENST00000368019 RBM25P49756 843 aaKnown RBP14.35□□□□□ -0.11
USF1-201ENST00000368019 ALDH1L2Q3SY69 923 aa14.35□□□□□ -0.11
USF1-201ENST00000368019 AKAP4Q5JQC9 854 aa14.35□□□□□ -0.11
USF1-201ENST00000368019 BCS1LQ9Y276 419 aa14.35□□□□□ -0.11
USF1-201ENST00000368019 PARP3Q9Y6F1 533 aa14.35□□□□□ -0.11
USF1-201ENST00000368019 MRC1P22897 1456 aa14.35□□□□□ -0.11
USF1-201ENST00000368019 USP42Q9H9J4 1324 aaKnown RBP14.35□□□□□ -0.11
USF1-201ENST00000368019 SBF1O95248 1867 aa14.34□□□□□ -0.11
USF1-201ENST00000368019 IPO8O15397 1037 aaKnown RBP14.34□□□□□ -0.11
USF1-201ENST00000368019 DDR1Q08345 913 aa14.34□□□□□ -0.11
USF1-201ENST00000368019 FTSJ3Q8IY81 847 aaKnown RBP14.34□□□□□ -0.11
USF1-201ENST00000368019 SLKQ9H2G2 1235 aaPredicted RBP14.34□□□□□ -0.11
USF1-201ENST00000368019 SLC52A2Q9HAB3 445 aa14.34□□□□□ -0.11
USF1-201ENST00000368019 LGR6Q9HBX8 967 aa14.34□□□□□ -0.11
USF1-201ENST00000368019 SRP68Q9UHB9 627 aaKnown RBP14.34□□□□□ -0.11
USF1-201ENST00000368019 TM4SF1P30408 202 aa14.33□□□□□ -0.12
USF1-201ENST00000368019 MRE11P49959 708 aa14.33□□□□□ -0.12
USF1-201ENST00000368019 ATF7IPQ6VMQ6 1270 aa14.33□□□□□ -0.12
USF1-201ENST00000368019 PLEKHF1Q96S99 279 aa14.33□□□□□ -0.12
USF1-201ENST00000368019 AFDNP55196 1824 aaKnown RBP14.33□□□□□ -0.12
USF1-201ENST00000368019 UBR2Q8IWV8 1755 aa14.32□□□□□ -0.12
USF1-201ENST00000368019 RNMTO43148 476 aaKnown RBP14.32□□□□□ -0.12
USF1-201ENST00000368019 FCHSD2O94868 740 aa14.32□□□□□ -0.12
USF1-201ENST00000368019 DDIT3P35638 169 aa14.32□□□□□ -0.12
USF1-201ENST00000368019 ARHGAP27Q6ZUM4 889 aa14.32□□□□□ -0.12
USF1-201ENST00000368019 HSCBQ8IWL3 235 aa14.32□□□□□ -0.12
USF1-201ENST00000368019 DNAJC10Q8IXB1 793 aa14.32□□□□□ -0.12
USF1-201ENST00000368019 CFAP44Q96MT7 982 aa14.32□□□□□ -0.12
USF1-201ENST00000368019 KCPQ6ZWJ8 1503 aa14.31□□□□□ -0.12
USF1-201ENST00000368019 CYP19A1P11511 503 aaPredicted RBP14.31□□□□□ -0.12
USF1-201ENST00000368019 CLCN1P35523 988 aa14.31□□□□□ -0.12
USF1-201ENST00000368019 TMPOP42166 694 aaKnown RBP14.31□□□□□ -0.12
USF1-201ENST00000368019 UBE2Q2Q8WVN8 375 aa14.31□□□□□ -0.12
USF1-201ENST00000368019 RRP7AQ9Y3A4 280 aaKnown RBP14.31□□□□□ -0.12
USF1-201ENST00000368019 NRXN2Q9P2S2 1712 aa14.31□□□□□ -0.12
USF1-201ENST00000368019 SOS1Q07889 1333 aaPredicted RBP14.31□□□□□ -0.12
USF1-201ENST00000368019 POLRMTO00411 1230 aaKnown RBP14.3□□□□□ -0.12
USF1-201ENST00000368019 HMOX1P09601 288 aa14.3□□□□□ -0.12
USF1-201ENST00000368019 U2AF1L5P0DN76 240 aaPredicted RBP14.3□□□□□ -0.12
USF1-201ENST00000368019 TRIM27P14373 513 aa14.3□□□□□ -0.12
USF1-201ENST00000368019 U2AF1Q01081 240 aaKnown RBP eCLIP14.3□□□□□ -0.12
USF1-201ENST00000368019 SKOR2Q2VWA4 1001 aaPredicted RBP14.3□□□□□ -0.12
USF1-201ENST00000368019 SMC4Q9NTJ3 1288 aa14.3□□□□□ -0.12
USF1-201ENST00000368019 PIM2Q9P1W9 311 aa14.3□□□□□ -0.12
USF1-201ENST00000368019 SLC39A6Q13433 755 aa14.29□□□□□ -0.12
USF1-201ENST00000368019 MTHFSDQ2M296 383 aaKnown RBP14.29□□□□□ -0.12
USF1-201ENST00000368019 ZBTB40Q9NUA8 1239 aa14.29□□□□□ -0.12
USF1-201ENST00000368019 TNNQ9UQP3 1299 aa14.29□□□□□ -0.12
USF1-201ENST00000368019 XRCC6P12956 609 aaKnown RBP eCLIP14.28□□□□□ -0.12
USF1-201ENST00000368019 NUCB1Q02818 461 aa14.28□□□□□ -0.12
USF1-201ENST00000368019 NEUROD2Q15784 382 aa14.28□□□□□ -0.12
USF1-201ENST00000368019 BMP2KLQ5H9B9 411 aa14.28□□□□□ -0.12
USF1-201ENST00000368019 ARHGAP45Q92619 1136 aa14.28□□□□□ -0.12
USF1-201ENST00000368019 TRIM35Q9UPQ4 493 aa14.28□□□□□ -0.12
USF1-201ENST00000368019 DLEC1Q9Y238 1755 aa14.28□□□□□ -0.12
USF1-201ENST00000368019 SIPA1L3O60292 1781 aaPredicted RBP14.27□□□□□ -0.12
USF1-201ENST00000368019 IBTKQ9P2D0 1353 aaPredicted RBP14.27□□□□□ -0.12
USF1-201ENST00000368019 TRAK2O60296 914 aa14.27□□□□□ -0.13
USF1-201ENST00000368019 DIAPH1O60610 1272 aaKnown RBP14.27□□□□□ -0.13
USF1-201ENST00000368019 TOMM70O94826 608 aa14.27□□□□□ -0.13
USF1-201ENST00000368019 CHRNA5P30532 468 aa14.27□□□□□ -0.13
USF1-201ENST00000368019 EXOSC9Q06265 439 aaKnown RBP14.27□□□□□ -0.13
USF1-201ENST00000368019 DALRD3Q5D0E6 543 aaKnown RBP14.27□□□□□ -0.13
USF1-201ENST00000368019 C9orf131Q5VYM1 1079 aa14.27□□□□□ -0.13
USF1-201ENST00000368019 USPL1Q5W0Q7 1092 aa14.27□□□□□ -0.13
USF1-201ENST00000368019 VSIG10Q8N0Z9 540 aa14.27□□□□□ -0.13
USF1-201ENST00000368019 SSH1Q8WYL5 1049 aa14.27□□□□□ -0.13
USF1-201ENST00000368019 GCC1Q96CN9 775 aa14.27□□□□□ -0.13
USF1-201ENST00000368019 NMRK2Q9NPI5 230 aa14.27□□□□□ -0.13
USF1-201ENST00000368019 NARFQ9UHQ1 456 aa14.27□□□□□ -0.13
USF1-201ENST00000368019 ZPR1O75312 459 aa14.26□□□□□ -0.13
USF1-201ENST00000368019 CALD1Q05682 793 aaKnown RBP14.26□□□□□ -0.13
USF1-201ENST00000368019 NFIXQ14938 502 aa14.26□□□□□ -0.13
USF1-201ENST00000368019 IFFO2Q5TF58 517 aa14.26□□□□□ -0.13
USF1-201ENST00000368019 CLEC17AQ6ZS10 378 aa14.26□□□□□ -0.13
USF1-201ENST00000368019 GBP4Q96PP9 640 aa14.26□□□□□ -0.13
USF1-201ENST00000368019 BCL2L12Q9HB09 334 aa14.26□□□□□ -0.13
USF1-201ENST00000368019 RRAGDQ9NQL2 400 aaPredicted RBP14.26□□□□□ -0.13
USF1-201ENST00000368019 ZBTB1Q9Y2K1 713 aa14.26□□□□□ -0.13
USF1-201ENST00000368019 CCDC88AQ3V6T2 1871 aa14.25□□□□□ -0.13
USF1-201ENST00000368019 COL15A1P39059 1388 aa14.25□□□□□ -0.13
USF1-201ENST00000368019 MFAP1P55081 439 aaKnown RBP14.25□□□□□ -0.13
USF1-201ENST00000368019 BCL2L13Q9BXK5 485 aa14.25□□□□□ -0.13
USF1-201ENST00000368019 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.25□□□□□ -0.13
USF1-201ENST00000368019 ITPRIPQ8IWB1 547 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms