RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 ACEP12821 1306 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 ATP8B2P98198 1209 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 STX1AQ16623 288 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 METTL24Q5JXM2 366 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 ZNF652Q9Y2D9 606 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 ARHGEF5Q12774 1597 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 ABCC1P33527 1531 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 BOLA2Q9H3K6 86 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 DISP1Q96F81 1524 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 MCM3P25205 808 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 HS1BP3Q53T59 392 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 KIF18AQ8NI77 898 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 DNAI2Q9GZS0 605 aa10.48□□□□□ -0.73
SYNE1-205ENST00000367251 CGNQ9P2M7 1197 aaKnown RBP10.48□□□□□ -0.73
SYNE1-205ENST00000367251 GJB2P29033 226 aa10.47□□□□□ -0.73
SYNE1-205ENST00000367251 BRPF1P55201 1214 aaPredicted RBP10.47□□□□□ -0.73
SYNE1-205ENST00000367251 PRIMPOLQ96LW4 560 aa10.47□□□□□ -0.73
SYNE1-205ENST00000367251 FBXO31Q5XUX0 539 aaPredicted RBP10.47□□□□□ -0.73
SYNE1-205ENST00000367251 RIMS2Q9UQ26 1411 aa10.47□□□□□ -0.73
SYNE1-205ENST00000367251 SKAP1Q86WV1 359 aa10.47□□□□□ -0.73
SYNE1-205ENST00000367251 ANKRD18AQ8IVF6 992 aa10.47□□□□□ -0.73
SYNE1-205ENST00000367251 DCTPP1Q9H773 170 aa10.47□□□□□ -0.73
SYNE1-205ENST00000367251 GOLGA6L9A6NEM1 432 aa10.47□□□□□ -0.73
SYNE1-205ENST00000367251 EPB41L2O43491 1005 aaKnown RBP10.47□□□□□ -0.73
SYNE1-205ENST00000367251 SDSP20132 328 aa10.47□□□□□ -0.73
SYNE1-205ENST00000367251 PDE1AP54750 535 aa10.47□□□□□ -0.73
SYNE1-205ENST00000367251 MAP3K12Q12852 859 aa10.47□□□□□ -0.73
SYNE1-205ENST00000367251 DEF6Q9H4E7 631 aa10.47□□□□□ -0.73
SYNE1-205ENST00000367251 LRP2BPQ9P2M1 347 aa10.47□□□□□ -0.73
SYNE1-205ENST00000367251 TTC41PQ6P2S7 1318 aa10.47□□□□□ -0.73
SYNE1-205ENST00000367251 ZSCAN22P10073 491 aaPredicted RBP10.46□□□□□ -0.73
SYNE1-205ENST00000367251 ZNF76P36508 570 aa10.46□□□□□ -0.73
SYNE1-205ENST00000367251 SKIDA1Q1XH10 827 aa10.46□□□□□ -0.73
SYNE1-205ENST00000367251 CCDC181Q5TID7 509 aa10.46□□□□□ -0.73
SYNE1-205ENST00000367251 PPP1R42Q7Z4L9 355 aa10.46□□□□□ -0.73
SYNE1-205ENST00000367251 CCDC148Q8NFR7 591 aa10.46□□□□□ -0.73
SYNE1-205ENST00000367251 ESYT1Q9BSJ8 1104 aa10.46□□□□□ -0.73
SYNE1-205ENST00000367251 BABAM1Q9NWV8 329 aa10.46□□□□□ -0.73
SYNE1-205ENST00000367251 EIF4G3O43432 1585 aaKnown RBP10.46□□□□□ -0.73
SYNE1-205ENST00000367251 ZSCAN23Q3MJ62 389 aa10.46□□□□□ -0.73
SYNE1-205ENST00000367251 ZNF397Q8NF99 534 aaPredicted RBP10.46□□□□□ -0.73
SYNE1-205ENST00000367251 RHPN1Q8TCX5 695 aa10.46□□□□□ -0.73
SYNE1-205ENST00000367251 UBXN4Q92575 508 aa10.46□□□□□ -0.73
SYNE1-205ENST00000367251 DDX11Q96FC9 970 aa10.46□□□□□ -0.73
SYNE1-205ENST00000367251 TMOD3Q9NYL9 352 aa10.46□□□□□ -0.73
SYNE1-205ENST00000367251 CLIP2Q9UDT6 1046 aa10.46□□□□□ -0.73
SYNE1-205ENST00000367251 PLXNC1O60486 1568 aa10.46□□□□□ -0.73
SYNE1-205ENST00000367251 GOLGA6L10A6NI86 522 aa10.46□□□□□ -0.73
SYNE1-205ENST00000367251 IFIT5Q13325 482 aaKnown RBP10.46□□□□□ -0.73
SYNE1-205ENST00000367251 FILIP1Q7Z7B0 1213 aa10.46□□□□□ -0.73
SYNE1-205ENST00000367251 TMX3Q96JJ7 454 aa10.46□□□□□ -0.73
SYNE1-205ENST00000367251 RAI14Q9P0K7 980 aa10.46□□□□□ -0.73
SYNE1-205ENST00000367251 MAP3K2Q9Y2U5 619 aa10.46□□□□□ -0.73
SYNE1-205ENST00000367251 ZNF213O14771 459 aa10.46□□□□□ -0.74
SYNE1-205ENST00000367251 SLC5A1P13866 664 aa10.46□□□□□ -0.74
SYNE1-205ENST00000367251 CFAP100Q494V2 611 aa10.46□□□□□ -0.74
SYNE1-205ENST00000367251 ZBTB40Q9NUA8 1239 aa10.46□□□□□ -0.74
SYNE1-205ENST00000367251 IDH1O75874 414 aaKnown RBP10.46□□□□□ -0.74
SYNE1-205ENST00000367251 TUBB4AP04350 444 aa10.46□□□□□ -0.74
SYNE1-205ENST00000367251 NPATQ14207 1427 aa10.46□□□□□ -0.74
SYNE1-205ENST00000367251 KANK3Q6NY19 840 aa10.46□□□□□ -0.74
SYNE1-205ENST00000367251 IFNL2Q8IZJ0 200 aa10.46□□□□□ -0.74
SYNE1-205ENST00000367251 CLEC11AQ9Y240 323 aa10.46□□□□□ -0.74
SYNE1-205ENST00000367251 SEPT7Q16181 437 aaKnown RBP10.45□□□□□ -0.74
SYNE1-205ENST00000367251 TTLL5Q6EMB2 1281 aa10.45□□□□□ -0.74
SYNE1-205ENST00000367251 STK11IPQ8N1F8 1099 aa10.45□□□□□ -0.74
SYNE1-205ENST00000367251 INTS4Q96HW7 963 aaKnown RBP10.45□□□□□ -0.74
SYNE1-205ENST00000367251 POTEB2H3BUK9 544 aa10.45□□□□□ -0.74
SYNE1-205ENST00000367251 CLCN1P35523 988 aa10.45□□□□□ -0.74
SYNE1-205ENST00000367251 RAB3GAP1Q15042 981 aa10.45□□□□□ -0.74
SYNE1-205ENST00000367251 CAMK4Q16566 473 aa10.45□□□□□ -0.74
SYNE1-205ENST00000367251 VTI1AQ96AJ9 217 aa10.45□□□□□ -0.74
SYNE1-205ENST00000367251 NEK1Q96PY6 1258 aa10.45□□□□□ -0.74
SYNE1-205ENST00000367251 ZNF219Q9P2Y4 722 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-205ENST00000367251 DYNC1I1O14576 645 aa10.45□□□□□ -0.74
SYNE1-205ENST00000367251 ZFYP08048 801 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-205ENST00000367251 SSRP1Q08945 709 aaKnown RBP10.45□□□□□ -0.74
SYNE1-205ENST00000367251 KIF24Q5T7B8 1368 aa10.45□□□□□ -0.74
SYNE1-205ENST00000367251 TRPM2O94759 1503 aa10.45□□□□□ -0.74
SYNE1-205ENST00000367251 ANKRD18BA2A2Z9 1011 aa10.45□□□□□ -0.74
SYNE1-205ENST00000367251 FERMT3Q86UX7 667 aa10.45□□□□□ -0.74
SYNE1-205ENST00000367251 NAPBQ9H115 298 aa10.45□□□□□ -0.74
SYNE1-205ENST00000367251 FLT4P35916 1363 aa10.44□□□□□ -0.74
SYNE1-205ENST00000367251 ARHGAP29Q52LW3 1261 aa10.44□□□□□ -0.74
SYNE1-205ENST00000367251 CAVIN4Q5BKX8 364 aa10.44□□□□□ -0.74
SYNE1-205ENST00000367251 CCDC150Q8NCX0 1101 aa10.44□□□□□ -0.74
SYNE1-205ENST00000367251 FGFR1OPO95684 399 aaKnown RBP10.44□□□□□ -0.74
SYNE1-205ENST00000367251 TMCO3Q6UWJ1 677 aa10.44□□□□□ -0.74
SYNE1-205ENST00000367251 CCDC8Q9H0W5 538 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-205ENST00000367251 PAXBP1Q9Y5B6 917 aa10.44□□□□□ -0.74
SYNE1-205ENST00000367251 KDM2BQ8NHM5 1336 aa10.44□□□□□ -0.74
SYNE1-205ENST00000367251 VAMP4O75379 141 aa10.44□□□□□ -0.74
SYNE1-205ENST00000367251 GRIPAP1Q4V328 841 aa10.44□□□□□ -0.74
SYNE1-205ENST00000367251 CWC25Q9NXE8 425 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-205ENST00000367251 SLC12A7Q9Y666 1083 aa10.44□□□□□ -0.74
SYNE1-205ENST00000367251 RAD50Q92878 1312 aa10.44□□□□□ -0.74
SYNE1-205ENST00000367251 TOP1P11387 765 aaKnown RBP10.44□□□□□ -0.74
SYNE1-205ENST00000367251 POLKQ9UBT6 870 aa10.44□□□□□ -0.74
SYNE1-205ENST00000367251 SSBP05455 408 aaKnown RBP eCLIP10.43□□□□□ -0.74
SYNE1-205ENST00000367251 SNRPA1P09661 255 aaKnown RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms