RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 MTHFSP49914 203 aa11.82□□□□□ -0.52
HMGB1P39-201ENST00000366304 TAF1DQ9H5J8 278 aaPredicted RBP11.82□□□□□ -0.52
HMGB1P39-201ENST00000366304 ZBTB1Q9Y2K1 713 aa11.82□□□□□ -0.52
HMGB1P39-201ENST00000366304 ANKRD31Q8N7Z5 1873 aa11.82□□□□□ -0.52
HMGB1P39-201ENST00000366304 COL15A1P39059 1388 aa11.81□□□□□ -0.52
HMGB1P39-201ENST00000366304 FER1L6Q2WGJ9 1857 aa11.81□□□□□ -0.52
HMGB1P39-201ENST00000366304 CCDC85CA6NKD9 419 aa11.81□□□□□ -0.52
HMGB1P39-201ENST00000366304 MLLT1Q03111 559 aaPredicted RBP11.81□□□□□ -0.52
HMGB1P39-201ENST00000366304 PLEKHO1Q53GL0 409 aaPredicted RBP11.81□□□□□ -0.52
HMGB1P39-201ENST00000366304 BICDL1Q6ZP65 573 aa11.81□□□□□ -0.52
HMGB1P39-201ENST00000366304 LDHDQ86WU2 507 aa11.81□□□□□ -0.52
HMGB1P39-201ENST00000366304 IFNLR1Q8IU57 520 aaPredicted RBP11.81□□□□□ -0.52
HMGB1P39-201ENST00000366304 ZNF622Q969S3 477 aaKnown RBP eCLIP11.81□□□□□ -0.52
HMGB1P39-201ENST00000366304 RASSF10A6NK89 507 aa11.8□□□□□ -0.52
HMGB1P39-201ENST00000366304 SLC39A6Q13433 755 aa11.8□□□□□ -0.52
HMGB1P39-201ENST00000366304 L3MBTL3Q96JM7 780 aaPredicted RBP11.8□□□□□ -0.52
HMGB1P39-201ENST00000366304 LTBP3Q9NS15 1303 aa11.8□□□□□ -0.52
HMGB1P39-201ENST00000366304 ADAMTSL1Q8N6G6 1762 aa11.79□□□□□ -0.52
HMGB1P39-201ENST00000366304 FMR1Q06787 632 aaKnown RBP eCLIP11.79□□□□□ -0.52
HMGB1P39-201ENST00000366304 TBC1D9BQ66K14 1250 aa11.79□□□□□ -0.52
HMGB1P39-201ENST00000366304 LGR6Q9HBX8 967 aa11.79□□□□□ -0.52
HMGB1P39-201ENST00000366304 DICER1Q9UPY3 1922 aaKnown RBP11.79□□□□□ -0.52
HMGB1P39-201ENST00000366304 ZNF541Q9H0D2 1346 aa11.79□□□□□ -0.52
HMGB1P39-201ENST00000366304 PRR5LQ6MZQ0 368 aa11.78□□□□□ -0.52
HMGB1P39-201ENST00000366304 TAOK3Q9H2K8 898 aa11.78□□□□□ -0.52
HMGB1P39-201ENST00000366304 WDR33Q9C0J8 1336 aaKnown RBP11.78□□□□□ -0.52
HMGB1P39-201ENST00000366304 DEFB115Q30KQ5 88 aa11.77□□□□□ -0.53
HMGB1P39-201ENST00000366304 AMOTQ4VCS5 1084 aa11.77□□□□□ -0.53
HMGB1P39-201ENST00000366304 EAPPQ56P03 285 aaPredicted RBP11.77□□□□□ -0.53
HMGB1P39-201ENST00000366304 MAP1SQ66K74 1059 aaPredicted RBP11.77□□□□□ -0.53
HMGB1P39-201ENST00000366304 BRIP1Q9BX63 1249 aa11.77□□□□□ -0.53
HMGB1P39-201ENST00000366304 TSKSQ9UJT2 592 aa11.77□□□□□ -0.53
HMGB1P39-201ENST00000366304 SLX4Q8IY92 1834 aa11.76□□□□□ -0.53
HMGB1P39-201ENST00000366304 SLC24A1O60721 1099 aa11.76□□□□□ -0.53
HMGB1P39-201ENST00000366304 CLCN6P51797 869 aa11.76□□□□□ -0.53
HMGB1P39-201ENST00000366304 PRPF40BQ6NWY9 871 aaKnown RBP11.76□□□□□ -0.53
HMGB1P39-201ENST00000366304 OLFM4Q6UX06 510 aa11.76□□□□□ -0.53
HMGB1P39-201ENST00000366304 C7orf43Q8WVR3 580 aa11.76□□□□□ -0.53
HMGB1P39-201ENST00000366304 FAM212AQ96EL1 285 aa11.76□□□□□ -0.53
HMGB1P39-201ENST00000366304 SLC52A2Q9HAB3 445 aa11.76□□□□□ -0.53
HMGB1P39-201ENST00000366304 THSD7BQ9C0I4 1608 aa11.75□□□□□ -0.53
HMGB1P39-201ENST00000366304 IQCA1LA6NCM1 817 aa11.75□□□□□ -0.53
HMGB1P39-201ENST00000366304 GALR2O43603 387 aaPredicted RBP11.75□□□□□ -0.53
HMGB1P39-201ENST00000366304 CANXP27824 592 aaKnown RBP11.75□□□□□ -0.53
HMGB1P39-201ENST00000366304 EIF5P55010 431 aaKnown RBP11.75□□□□□ -0.53
HMGB1P39-201ENST00000366304 C1orf141Q5JVX7 400 aa11.75□□□□□ -0.53
HMGB1P39-201ENST00000366304 CNTROBQ8N137 903 aa11.75□□□□□ -0.53
HMGB1P39-201ENST00000366304 MRC1P22897 1456 aa11.75□□□□□ -0.53
HMGB1P39-201ENST00000366304 SCN11AQ9UI33 1791 aa11.74□□□□□ -0.53
HMGB1P39-201ENST00000366304 SRGNP10124 158 aa11.74□□□□□ -0.53
HMGB1P39-201ENST00000366304 EPHX2P34913 555 aa11.74□□□□□ -0.53
HMGB1P39-201ENST00000366304 PDE6BP35913 854 aa11.74□□□□□ -0.53
HMGB1P39-201ENST00000366304 LTBP1Q14766 1721 aa11.74□□□□□ -0.53
HMGB1P39-201ENST00000366304 MAP2K1Q02750 393 aaPredicted RBP11.73□□□□□ -0.53
HMGB1P39-201ENST00000366304 RNF123Q5XPI4 1314 aa11.73□□□□□ -0.53
HMGB1P39-201ENST00000366304 SULT6B1Q6IMI4 303 aa11.73□□□□□ -0.53
HMGB1P39-201ENST00000366304 CYP4F22Q6NT55 531 aa11.73□□□□□ -0.53
HMGB1P39-201ENST00000366304 ZNF277Q9NRM2 450 aaPredicted RBP11.73□□□□□ -0.53
HMGB1P39-201ENST00000366304 HACL1Q9UJ83 578 aa11.73□□□□□ -0.53
HMGB1P39-201ENST00000366304 SCN4AP35499 1836 aa11.72□□□□□ -0.53
HMGB1P39-201ENST00000366304 COL4A5P29400 1685 aa11.72□□□□□ -0.53
HMGB1P39-201ENST00000366304 RNMTO43148 476 aaKnown RBP11.72□□□□□ -0.53
HMGB1P39-201ENST00000366304 AOC2O75106 756 aa11.72□□□□□ -0.53
HMGB1P39-201ENST00000366304 DCAF8Q5TAQ9 597 aa11.72□□□□□ -0.53
HMGB1P39-201ENST00000366304 CST9Q5W186 159 aa11.72□□□□□ -0.53
HMGB1P39-201ENST00000366304 STYK1Q6J9G0 422 aa11.72□□□□□ -0.53
HMGB1P39-201ENST00000366304 CAPNS2Q96L46 248 aa11.72□□□□□ -0.53
HMGB1P39-201ENST00000366304 MCOLN1Q9GZU1 580 aa11.72□□□□□ -0.53
HMGB1P39-201ENST00000366304 ABT1Q9ULW3 272 aaKnown RBP11.72□□□□□ -0.53
HMGB1P39-201ENST00000366304 TBC1D2BQ9UPU7 963 aa11.72□□□□□ -0.53
HMGB1P39-201ENST00000366304 SCN7AQ01118 1682 aa11.71□□□□□ -0.53
HMGB1P39-201ENST00000366304 AKAP4Q5JQC9 854 aa11.71□□□□□ -0.53
HMGB1P39-201ENST00000366304 SLC51AQ86UW1 340 aa11.71□□□□□ -0.53
HMGB1P39-201ENST00000366304 CNKSR1Q969H4 720 aa11.71□□□□□ -0.53
HMGB1P39-201ENST00000366304 DDX21Q9NR30 783 aaKnown RBP eCLIP11.71□□□□□ -0.53
HMGB1P39-201ENST00000366304 TRAF5O00463 557 aa11.7□□□□□ -0.54
HMGB1P39-201ENST00000366304 IL13P35225 146 aa11.7□□□□□ -0.54
HMGB1P39-201ENST00000366304 GRM1Q13255 1194 aa11.7□□□□□ -0.54
HMGB1P39-201ENST00000366304 CDCA8Q53HL2 280 aa11.7□□□□□ -0.54
HMGB1P39-201ENST00000366304 SPOCK2Q92563 424 aa11.7□□□□□ -0.54
HMGB1P39-201ENST00000366304 GPR101Q96P66 508 aaPredicted RBP11.7□□□□□ -0.54
HMGB1P39-201ENST00000366304 CACNA1SQ13698 1873 aa11.7□□□□□ -0.54
HMGB1P39-201ENST00000366304 SNED1Q8TER0 1413 aa11.69□□□□□ -0.54
HMGB1P39-201ENST00000366304 FZD9O00144 591 aa11.69□□□□□ -0.54
HMGB1P39-201ENST00000366304 CAMTA2O94983 1202 aa11.69□□□□□ -0.54
HMGB1P39-201ENST00000366304 FKBP4Q02790 459 aaKnown RBP eCLIP11.69□□□□□ -0.54
HMGB1P39-201ENST00000366304 VSIG10Q8N0Z9 540 aa11.69□□□□□ -0.54
HMGB1P39-201ENST00000366304 CNBD1Q8NA66 436 aa11.69□□□□□ -0.54
HMGB1P39-201ENST00000366304 KIF12Q96FN5 646 aa11.69□□□□□ -0.54
HMGB1P39-201ENST00000366304 MASTLQ96GX5 879 aa11.69□□□□□ -0.54
HMGB1P39-201ENST00000366304 MS4A3Q96HJ5 214 aa11.69□□□□□ -0.54
HMGB1P39-201ENST00000366304 PDZRN3Q9UPQ7 1066 aa11.69□□□□□ -0.54
HMGB1P39-201ENST00000366304 UBR2Q8IWV8 1755 aa11.69□□□□□ -0.54
HMGB1P39-201ENST00000366304 ARFGEF2Q9Y6D5 1785 aa11.69□□□□□ -0.54
HMGB1P39-201ENST00000366304 PDE4DIPQ5VU43 2346 aa11.68□□□□□ -0.54
HMGB1P39-201ENST00000366304 ZNF496Q96IT1 587 aaPredicted RBP11.68□□□□□ -0.54
HMGB1P39-201ENST00000366304 CFAP44Q96MT7 982 aa11.68□□□□□ -0.54
HMGB1P39-201ENST00000366304 A0A087WZG4 1122 aa11.67□□□□□ -0.54
HMGB1P39-201ENST00000366304 A1BGP04217 495 aa11.67□□□□□ -0.54
HMGB1P39-201ENST00000366304 CCDC93Q567U6 631 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms