RNA–Protein interactions for RNA: ENST00000359005.8

TRAPPC4-201, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2 BASIC

Gene TRAPPC4, Length 849 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-201ENST00000359005 TRAPPC3LQ5T215 181 aa13.49□□□□□ -0.25
TRAPPC4-201ENST00000359005 ZBTB47Q9UFB7 747 aaPredicted RBP13.49□□□□□ -0.25
TRAPPC4-201ENST00000359005 WWC3Q9ULE0 1092 aa13.49□□□□□ -0.25
TRAPPC4-201ENST00000359005 RTCBQ9Y3I0 505 aaKnown RBP13.49□□□□□ -0.25
TRAPPC4-201ENST00000359005 C4BP0C0L5 1744 aa13.49□□□□□ -0.25
TRAPPC4-201ENST00000359005 PXDNLA1KZ92 1463 aa13.48□□□□□ -0.25
TRAPPC4-201ENST00000359005 SIPA1L3O60292 1781 aaPredicted RBP13.48□□□□□ -0.25
TRAPPC4-201ENST00000359005 CNTNAP4Q9C0A0 1308 aa13.48□□□□□ -0.25
TRAPPC4-201ENST00000359005 DCAF8L1A6NGE4 600 aa13.48□□□□□ -0.25
TRAPPC4-201ENST00000359005 DDX58O95786 925 aaKnown RBP13.48□□□□□ -0.25
TRAPPC4-201ENST00000359005 MMP10P09238 476 aa13.48□□□□□ -0.25
TRAPPC4-201ENST00000359005 FLIIQ13045 1269 aa13.48□□□□□ -0.25
TRAPPC4-201ENST00000359005 FKBP5Q13451 457 aaPredicted RBP13.48□□□□□ -0.25
TRAPPC4-201ENST00000359005 GCC1Q96CN9 775 aa13.48□□□□□ -0.25
TRAPPC4-201ENST00000359005 HYPKQ9NX55 129 aa13.48□□□□□ -0.25
TRAPPC4-201ENST00000359005 SRP68Q9UHB9 627 aaKnown RBP13.48□□□□□ -0.25
TRAPPC4-201ENST00000359005 MRC1P22897 1456 aa13.48□□□□□ -0.25
TRAPPC4-201ENST00000359005 ZBTB7BO15156 539 aaPredicted RBP13.47□□□□□ -0.25
TRAPPC4-201ENST00000359005 KCNQ3O43525 872 aa13.47□□□□□ -0.25
TRAPPC4-201ENST00000359005 HMMRO75330 724 aa13.47□□□□□ -0.25
TRAPPC4-201ENST00000359005 GNAI3P08754 354 aa13.47□□□□□ -0.25
TRAPPC4-201ENST00000359005 GYS1P13807 737 aa13.47□□□□□ -0.25
TRAPPC4-201ENST00000359005 ZNF790Q6PG37 636 aa13.47□□□□□ -0.25
TRAPPC4-201ENST00000359005 FMNL2Q96PY5 1086 aa13.47□□□□□ -0.25
TRAPPC4-201ENST00000359005 TSHZ2Q9NRE2 1034 aa13.47□□□□□ -0.25
TRAPPC4-201ENST00000359005 CD2APQ9Y5K6 639 aa13.47□□□□□ -0.25
TRAPPC4-201ENST00000359005 C5P01031 1676 aa13.47□□□□□ -0.25
TRAPPC4-201ENST00000359005 CYP19A1P11511 503 aaPredicted RBP13.46□□□□□ -0.25
TRAPPC4-201ENST00000359005 KRT24Q2M2I5 525 aa13.46□□□□□ -0.25
TRAPPC4-201ENST00000359005 RPAP2Q8IXW5 612 aaPredicted RBP13.46□□□□□ -0.25
TRAPPC4-201ENST00000359005 GIGYF1O75420 1035 aaPredicted RBP13.45□□□□□ -0.26
TRAPPC4-201ENST00000359005 SNRPA1P09661 255 aaKnown RBP13.45□□□□□ -0.26
TRAPPC4-201ENST00000359005 HMGB2P26583 209 aaKnown RBP13.45□□□□□ -0.26
TRAPPC4-201ENST00000359005 ZNF784Q8NCA9 323 aaPredicted RBP13.45□□□□□ -0.26
TRAPPC4-201ENST00000359005 TNNQ9UQP3 1299 aa13.45□□□□□ -0.26
TRAPPC4-201ENST00000359005 COL24A1Q17RW2 1714 aa13.44□□□□□ -0.26
TRAPPC4-201ENST00000359005 QSER1Q2KHR3 1735 aa13.44□□□□□ -0.26
TRAPPC4-201ENST00000359005 EIF5BO60841 1220 aaKnown RBP13.44□□□□□ -0.26
TRAPPC4-201ENST00000359005 EIF2S2P20042 333 aaKnown RBP13.44□□□□□ -0.26
TRAPPC4-201ENST00000359005 RFC4P35249 363 aa13.44□□□□□ -0.26
TRAPPC4-201ENST00000359005 ZNF496Q96IT1 587 aaPredicted RBP13.44□□□□□ -0.26
TRAPPC4-201ENST00000359005 PCDHB15Q9Y5E8 787 aa13.44□□□□□ -0.26
TRAPPC4-201ENST00000359005 HEG1Q9ULI3 1381 aa13.44□□□□□ -0.26
TRAPPC4-201ENST00000359005 TAF1LQ8IZX4 1826 aa13.43□□□□□ -0.26
TRAPPC4-201ENST00000359005 ERBB4Q15303 1308 aa13.43□□□□□ -0.26
TRAPPC4-201ENST00000359005 IGHDP01880 384 aa13.43□□□□□ -0.26
TRAPPC4-201ENST00000359005 ADRA2BP18089 450 aa13.43□□□□□ -0.26
TRAPPC4-201ENST00000359005 DDR1Q08345 913 aa13.43□□□□□ -0.26
TRAPPC4-201ENST00000359005 SLC4A10Q6U841 1118 aa13.43□□□□□ -0.26
TRAPPC4-201ENST00000359005 NLGN1Q8N2Q7 840 aa13.43□□□□□ -0.26
TRAPPC4-201ENST00000359005 TEX13AQ9BXU3 409 aaPredicted RBP13.43□□□□□ -0.26
TRAPPC4-201ENST00000359005 ZBTB1Q9Y2K1 713 aa13.43□□□□□ -0.26
TRAPPC4-201ENST00000359005 BCL2L12Q9HB09 334 aa13.42□□□□□ -0.26
TRAPPC4-201ENST00000359005 DDX21Q9NR30 783 aaKnown RBP eCLIP13.42□□□□□ -0.26
TRAPPC4-201ENST00000359005 CCDC87Q9NVE4 849 aa13.42□□□□□ -0.26
TRAPPC4-201ENST00000359005 USP42Q9H9J4 1324 aaKnown RBP13.41□□□□□ -0.26
TRAPPC4-201ENST00000359005 KCPQ6ZWJ8 1503 aa13.41□□□□□ -0.26
TRAPPC4-201ENST00000359005 A0A0G2JLW4 131 aa13.41□□□□□ -0.26
TRAPPC4-201ENST00000359005 GNAI2P04899 355 aa13.41□□□□□ -0.26
TRAPPC4-201ENST00000359005 SMC5Q8IY18 1101 aa13.41□□□□□ -0.26
TRAPPC4-201ENST00000359005 SRCIN1Q9C0H9 1055 aa13.41□□□□□ -0.26
TRAPPC4-201ENST00000359005 UBR3Q6ZT12 1888 aa13.41□□□□□ -0.26
TRAPPC4-201ENST00000359005 N4BP2Q86UW6 1770 aaPredicted RBP13.4□□□□□ -0.26
TRAPPC4-201ENST00000359005 MYH14Q7Z406 1995 aaKnown RBP13.4□□□□□ -0.26
TRAPPC4-201ENST00000359005 PRAMEF22A3QJZ6 481 aa13.4□□□□□ -0.26
TRAPPC4-201ENST00000359005 KCNA3P22001 575 aa13.4□□□□□ -0.26
TRAPPC4-201ENST00000359005 TM4SF1P30408 202 aa13.4□□□□□ -0.26
TRAPPC4-201ENST00000359005 NEXNQ0ZGT2 675 aa13.4□□□□□ -0.26
TRAPPC4-201ENST00000359005 USPL1Q5W0Q7 1092 aa13.4□□□□□ -0.26
TRAPPC4-201ENST00000359005 NECTIN2Q92692 538 aa13.4□□□□□ -0.26
TRAPPC4-201ENST00000359005 CHPF2Q9P2E5 772 aa13.4□□□□□ -0.26
TRAPPC4-201ENST00000359005 ATP10DQ9P241 1426 aa13.39□□□□□ -0.27
TRAPPC4-201ENST00000359005 ALDH1L1O75891 902 aa13.39□□□□□ -0.27
TRAPPC4-201ENST00000359005 DPEP1P16444 411 aa13.39□□□□□ -0.27
TRAPPC4-201ENST00000359005 FAM161AQ3B820 660 aa13.39□□□□□ -0.27
TRAPPC4-201ENST00000359005 VSIG10Q8N0Z9 540 aa13.39□□□□□ -0.27
TRAPPC4-201ENST00000359005 DNAAF4Q8WXU2 420 aa13.39□□□□□ -0.27
TRAPPC4-201ENST00000359005 RBM19Q9Y4C8 960 aaKnown RBP13.39□□□□□ -0.27
TRAPPC4-201ENST00000359005 IBTKQ9P2D0 1353 aaPredicted RBP13.39□□□□□ -0.27
TRAPPC4-201ENST00000359005 GRIN3BO60391 1043 aa13.38□□□□□ -0.27
TRAPPC4-201ENST00000359005 A1BGP04217 495 aa13.38□□□□□ -0.27
TRAPPC4-201ENST00000359005 RGS3P49796 1198 aa13.38□□□□□ -0.27
TRAPPC4-201ENST00000359005 KSR2Q6VAB6 950 aa13.38□□□□□ -0.27
TRAPPC4-201ENST00000359005 G2E3Q7L622 706 aa13.38□□□□□ -0.27
TRAPPC4-201ENST00000359005 ANKRD44Q8N8A2 993 aa13.38□□□□□ -0.27
TRAPPC4-201ENST00000359005 POLRMTO00411 1230 aaKnown RBP13.37□□□□□ -0.27
TRAPPC4-201ENST00000359005 UBTFL1P0CB47 393 aaPredicted RBP13.37□□□□□ -0.27
TRAPPC4-201ENST00000359005 PDE4AP27815 886 aa13.37□□□□□ -0.27
TRAPPC4-201ENST00000359005 PIP4K2AP48426 406 aaPredicted RBP13.37□□□□□ -0.27
TRAPPC4-201ENST00000359005 EIF5P55010 431 aaKnown RBP13.37□□□□□ -0.27
TRAPPC4-201ENST00000359005 NFIXQ14938 502 aa13.37□□□□□ -0.27
TRAPPC4-201ENST00000359005 PDZRN3Q9UPQ7 1066 aa13.37□□□□□ -0.27
TRAPPC4-201ENST00000359005 USP16Q9Y5T5 823 aa13.37□□□□□ -0.27
TRAPPC4-201ENST00000359005 LAMB4A4D0S4 1761 aa13.37□□□□□ -0.27
TRAPPC4-201ENST00000359005 ANP32AP39687 249 aaKnown RBP13.36□□□□□ -0.27
TRAPPC4-201ENST00000359005 NUCB1Q02818 461 aa13.36□□□□□ -0.27
TRAPPC4-201ENST00000359005 NARFQ9UHQ1 456 aa13.36□□□□□ -0.27
TRAPPC4-201ENST00000359005 PARP3Q9Y6F1 533 aa13.36□□□□□ -0.27
TRAPPC4-201ENST00000359005 PI4KAP2A4QPH2 592 aa13.35□□□□□ -0.27
TRAPPC4-201ENST00000359005 F6X3S4 739 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms