RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 AMOTQ4VCS5 1084 aa17.14■□□□□ 0.33
CHD4-201ENST00000357008 SPECC1Q5M775 1068 aa17.14■□□□□ 0.33
CHD4-201ENST00000357008 GIMAP6Q6P9H5 292 aa17.14■□□□□ 0.33
CHD4-201ENST00000357008 EPRSP07814 1512 aaKnown RBP17.14■□□□□ 0.33
CHD4-201ENST00000357008 IFIT3O14879 490 aaKnown RBP17.14■□□□□ 0.33
CHD4-201ENST00000357008 PRDM11Q9NQV5 511 aa17.14■□□□□ 0.33
CHD4-201ENST00000357008 CCDC102BQ68D86 513 aa17.13■□□□□ 0.33
CHD4-201ENST00000357008 ZSCAN29Q8IWY8 852 aaPredicted RBP17.13■□□□□ 0.33
CHD4-201ENST00000357008 NSD2O96028 1365 aa17.13■□□□□ 0.33
CHD4-201ENST00000357008 TMEM266Q2M3C6 531 aa17.13■□□□□ 0.33
CHD4-201ENST00000357008 PYM1Q9BRP8 204 aaKnown RBP17.13■□□□□ 0.33
CHD4-201ENST00000357008 HYPKQ9NX55 129 aa17.13■□□□□ 0.33
CHD4-201ENST00000357008 CCDC175P0C221 793 aa17.13■□□□□ 0.33
CHD4-201ENST00000357008 RBM5P52756 815 aaKnown RBP eCLIP17.13■□□□□ 0.334e-8■□□□□ 9.6
CHD4-201ENST00000357008 NEK1Q96PY6 1258 aa17.13■□□□□ 0.33
CHD4-201ENST00000357008 USP16Q9Y5T5 823 aa17.13■□□□□ 0.33
CHD4-201ENST00000357008 CCDC82Q8N4S0 544 aa17.13■□□□□ 0.33
CHD4-201ENST00000357008 SNX21Q969T3 373 aa17.13■□□□□ 0.33
CHD4-201ENST00000357008 MKNK2Q9HBH9 465 aa17.13■□□□□ 0.33
CHD4-201ENST00000357008 CCDC194A0A1B0GVG4 234 aa17.13■□□□□ 0.33
CHD4-201ENST00000357008 GSTTP1A0A1W2PQM5 241 aa17.13■□□□□ 0.33
CHD4-201ENST00000357008 CCDC12Q8WUD4 166 aaPredicted RBP17.13■□□□□ 0.33
CHD4-201ENST00000357008 BCCIPQ9P287 314 aaKnown RBP eCLIP17.13■□□□□ 0.33
CHD4-201ENST00000357008 MTIF2P46199 727 aaKnown RBP17.12■□□□□ 0.33
CHD4-201ENST00000357008 UBE2Q2Q8WVN8 375 aa17.12■□□□□ 0.33
CHD4-201ENST00000357008 KLHL34Q8N239 644 aa17.12■□□□□ 0.33
CHD4-201ENST00000357008 ARHGAP45Q92619 1136 aa17.12■□□□□ 0.33
CHD4-201ENST00000357008 GOPCQ9HD26 462 aa17.12■□□□□ 0.33
CHD4-201ENST00000357008 IARSP41252 1262 aaKnown RBP17.12■□□□□ 0.33
CHD4-201ENST00000357008 HLTFQ14527 1009 aaKnown RBP eCLIP17.12■□□□□ 0.333e-7■□□□□ 10.3
CHD4-201ENST00000357008 CAVIN4Q5BKX8 364 aa17.12■□□□□ 0.33
CHD4-201ENST00000357008 TIGD1Q96MW7 591 aa17.12■□□□□ 0.33
CHD4-201ENST00000357008 ZKSCAN5Q9Y2L8 839 aa17.12■□□□□ 0.33
CHD4-201ENST00000357008 IFIT5Q13325 482 aaKnown RBP17.12■□□□□ 0.33
CHD4-201ENST00000357008 ORC3Q9UBD5 711 aaPredicted RBP17.12■□□□□ 0.33
CHD4-201ENST00000357008 DNA2P51530 1060 aa17.12■□□□□ 0.33
CHD4-201ENST00000357008 KRI1Q8N9T8 703 aaKnown RBP17.12■□□□□ 0.33
CHD4-201ENST00000357008 FAM200AQ8TCP9 573 aa17.12■□□□□ 0.33
CHD4-201ENST00000357008 EMILIN1Q9Y6C2 1016 aa17.12■□□□□ 0.33
CHD4-201ENST00000357008 EHBP1Q8NDI1 1231 aa17.11■□□□□ 0.33
CHD4-201ENST00000357008 ZMYND15Q9H091 742 aa17.11■□□□□ 0.33
CHD4-201ENST00000357008 TAOK3Q9H2K8 898 aa17.11■□□□□ 0.33
CHD4-201ENST00000357008 NLRP5P59047 1200 aa17.11■□□□□ 0.33
CHD4-201ENST00000357008 NME9Q86XW9 330 aa17.11■□□□□ 0.33
CHD4-201ENST00000357008 MATR3P43243 847 aaKnown RBP eCLIP17.11■□□□□ 0.332e-6■■■■□ 22.9
CHD4-201ENST00000357008 RANBP6O60518 1105 aaKnown RBP17.11■□□□□ 0.33
CHD4-201ENST00000357008 ANAPC15P60006 121 aa17.1■□□□□ 0.33
CHD4-201ENST00000357008 FAM114A1Q8IWE2 563 aa17.1■□□□□ 0.33
CHD4-201ENST00000357008 MAP3K1Q13233 1512 aa17.1■□□□□ 0.33
CHD4-201ENST00000357008 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.1■□□□□ 0.334e-6■■□□□ 11.4
CHD4-201ENST00000357008 POLR3DP05423 398 aaPredicted RBP17.1■□□□□ 0.33
CHD4-201ENST00000357008 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.1■□□□□ 0.33
CHD4-201ENST00000357008 SKILP12757 684 aa17.1■□□□□ 0.33
CHD4-201ENST00000357008 AMPD3Q01432 767 aa17.1■□□□□ 0.33
CHD4-201ENST00000357008 CATIPQ7Z7H3 387 aa17.1■□□□□ 0.33
CHD4-201ENST00000357008 SDSP20132 328 aa17.09■□□□□ 0.33
CHD4-201ENST00000357008 HS1BP3Q53T59 392 aa17.09■□□□□ 0.33
CHD4-201ENST00000357008 TUBB4AP04350 444 aa17.09■□□□□ 0.33
CHD4-201ENST00000357008 IBSPP21815 317 aaPredicted RBP17.09■□□□□ 0.33
CHD4-201ENST00000357008 TNIP1Q15025 636 aa17.09■□□□□ 0.33
CHD4-201ENST00000357008 A0A087WZG4 1122 aa17.09■□□□□ 0.33
CHD4-201ENST00000357008 CCDC186Q7Z3E2 898 aa17.09■□□□□ 0.33
CHD4-201ENST00000357008 RPRD2Q5VT52 1461 aaKnown RBP17.09■□□□□ 0.33
CHD4-201ENST00000357008 ZNF830Q96NB3 372 aaPredicted RBP17.09■□□□□ 0.33
CHD4-201ENST00000357008 PANK2Q9BZ23 570 aa17.09■□□□□ 0.33
CHD4-201ENST00000357008 CDK13Q14004 1512 aaKnown RBP17.09■□□□□ 0.33
CHD4-201ENST00000357008 ARFGAP3Q9NP61 516 aa17.09■□□□□ 0.33
CHD4-201ENST00000357008 MBIPQ9NS73 344 aa17.08■□□□□ 0.33
CHD4-201ENST00000357008 ABCC5O15440 1437 aa17.08■□□□□ 0.33
CHD4-201ENST00000357008 PPP1R42Q7Z4L9 355 aa17.08■□□□□ 0.33
CHD4-201ENST00000357008 WAPLQ7Z5K2 1190 aa17.08■□□□□ 0.33
CHD4-201ENST00000357008 USP48Q86UV5 1035 aa17.08■□□□□ 0.33
CHD4-201ENST00000357008 UBASH3AP57075 661 aa17.08■□□□□ 0.32
CHD4-201ENST00000357008 UBA5Q9GZZ9 404 aa17.08■□□□□ 0.32
CHD4-201ENST00000357008 TCP11L1Q9NUJ3 509 aa17.08■□□□□ 0.32
CHD4-201ENST00000357008 PTPN23Q9H3S7 1636 aa17.08■□□□□ 0.32
CHD4-201ENST00000357008 SLC5A1P13866 664 aa17.08■□□□□ 0.32
CHD4-201ENST00000357008 ANO6Q4KMQ2 910 aa17.08■□□□□ 0.32
CHD4-201ENST00000357008 PCDHB15Q9Y5E8 787 aa17.08■□□□□ 0.32
CHD4-201ENST00000357008 ZC3H6P61129 1189 aaKnown RBP17.07■□□□□ 0.32
CHD4-201ENST00000357008 SPECC1LQ69YQ0 1117 aa17.07■□□□□ 0.32
CHD4-201ENST00000357008 GIGYF2Q6Y7W6 1299 aaKnown RBP17.07■□□□□ 0.32
CHD4-201ENST00000357008 ZSWIM4Q9H7M6 989 aa17.07■□□□□ 0.32
CHD4-201ENST00000357008 JADE2Q9NQC1 790 aa17.07■□□□□ 0.32
CHD4-201ENST00000357008 SCAF11Q99590 1463 aaKnown RBP17.07■□□□□ 0.32
CHD4-201ENST00000357008 CNPY2Q9Y2B0 182 aa17.07■□□□□ 0.32
CHD4-201ENST00000357008 C8orf34Q49A92 452 aa17.07■□□□□ 0.32
CHD4-201ENST00000357008 ZNF444Q8N0Y2 327 aaPredicted RBP17.07■□□□□ 0.32
CHD4-201ENST00000357008 TMCO5BA8MYB1 307 aa17.07■□□□□ 0.32
CHD4-201ENST00000357008 SYKP43405 635 aa17.07■□□□□ 0.32
CHD4-201ENST00000357008 CKAP4Q07065 602 aaKnown RBP17.07■□□□□ 0.32
CHD4-201ENST00000357008 GOLIM4O00461 696 aa17.07■□□□□ 0.32
CHD4-201ENST00000357008 MPHOSPH10O00566 681 aaKnown RBP17.07■□□□□ 0.32
CHD4-201ENST00000357008 MAATS1Q7Z4T9 603 aa17.07■□□□□ 0.32
CHD4-201ENST00000357008 NCOA7Q8NI08 942 aa17.07■□□□□ 0.32
CHD4-201ENST00000357008 N4BP3O15049 544 aa17.06■□□□□ 0.32
CHD4-201ENST00000357008 PTCD1O75127 700 aaKnown RBP17.06■□□□□ 0.32
CHD4-201ENST00000357008 TTF1Q15361 905 aaPredicted RBP17.06■□□□□ 0.32
CHD4-201ENST00000357008 TMEM67Q5HYA8 995 aa17.06■□□□□ 0.32
CHD4-201ENST00000357008 CALML4Q96GE6 196 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms