RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 BCL2L13Q9BXK5 485 aa28.42■■■□□ 2.14
SHMT1-203ENST00000354098 HLFQ16534 295 aa28.42■■■□□ 2.14
SHMT1-203ENST00000354098 KIF6Q6ZMV9 814 aa28.42■■■□□ 2.14
SHMT1-203ENST00000354098 MTFR1LQ9H019 292 aa28.42■■■□□ 2.14
SHMT1-203ENST00000354098 ZNF428Q96B54 188 aa28.41■■■□□ 2.14
SHMT1-203ENST00000354098 MAP3K15Q6ZN16 1313 aa28.41■■■□□ 2.14
SHMT1-203ENST00000354098 MRPL50Q8N5N7 158 aaKnown RBP28.39■■■□□ 2.14
SHMT1-203ENST00000354098 SCN7AQ01118 1682 aa28.39■■■□□ 2.13
SHMT1-203ENST00000354098 RARSP54136 660 aaKnown RBP28.38■■■□□ 2.13
SHMT1-203ENST00000354098 ERVV-1B6SEH8 477 aa28.38■■■□□ 2.13
SHMT1-203ENST00000354098 ALDH1L2Q3SY69 923 aa28.38■■■□□ 2.13
SHMT1-203ENST00000354098 NLGN1Q8N2Q7 840 aa28.38■■■□□ 2.13
SHMT1-203ENST00000354098 BCORQ6W2J9 1755 aa28.37■■■□□ 2.13
SHMT1-203ENST00000354098 FLIIQ13045 1269 aa28.37■■■□□ 2.13
SHMT1-203ENST00000354098 ANKRD13DQ6ZTN6 518 aa28.37■■■□□ 2.13
SHMT1-203ENST00000354098 SMC4Q9NTJ3 1288 aa28.36■■■□□ 2.13
SHMT1-203ENST00000354098 TBC1D9BQ66K14 1250 aa28.35■■■□□ 2.13
SHMT1-203ENST00000354098 PLBD2Q8NHP8 589 aa28.35■■■□□ 2.13
SHMT1-203ENST00000354098 CLEC4GQ6UXB4 293 aa28.35■■■□□ 2.13
SHMT1-203ENST00000354098 BICDL1Q6ZP65 573 aa28.35■■■□□ 2.13
SHMT1-203ENST00000354098 PTGER2P43116 358 aa28.34■■■□□ 2.13
SHMT1-203ENST00000354098 GIGYF2Q6Y7W6 1299 aaKnown RBP28.34■■■□□ 2.13
SHMT1-203ENST00000354098 SPON1Q9HCB6 807 aa28.34■■■□□ 2.13
SHMT1-203ENST00000354098 TM4SF1P30408 202 aa28.33■■■□□ 2.13
SHMT1-203ENST00000354098 NFIXQ14938 502 aa28.33■■■□□ 2.13
SHMT1-203ENST00000354098 SGIP1Q9BQI5 828 aa28.33■■■□□ 2.13
SHMT1-203ENST00000354098 ZNF652Q9Y2D9 606 aa28.33■■■□□ 2.13
SHMT1-203ENST00000354098 BCAR3O75815 825 aa28.32■■■□□ 2.12
SHMT1-203ENST00000354098 MMP10P09238 476 aa28.32■■■□□ 2.12
SHMT1-203ENST00000354098 FKBP5Q13451 457 aaPredicted RBP28.32■■■□□ 2.12
SHMT1-203ENST00000354098 RIC3Q7Z5B4 369 aa28.32■■■□□ 2.12
SHMT1-203ENST00000354098 PI4KAP2A4QPH2 592 aa28.32■■■□□ 2.12
SHMT1-203ENST00000354098 PI4KAP1Q8N8J0 262 aa28.32■■■□□ 2.12
SHMT1-203ENST00000354098 CACNA1FO60840 1977 aa28.31■■■□□ 2.12
SHMT1-203ENST00000354098 RGL2O15211 777 aa28.31■■■□□ 2.12
SHMT1-203ENST00000354098 DDX58O95786 925 aaKnown RBP28.31■■■□□ 2.12
SHMT1-203ENST00000354098 COL24A1Q17RW2 1714 aa28.31■■■□□ 2.12
SHMT1-203ENST00000354098 ADCY9O60503 1353 aa28.3■■■□□ 2.12
SHMT1-203ENST00000354098 DDR1Q08345 913 aa28.3■■■□□ 2.12
SHMT1-203ENST00000354098 KSR2Q6VAB6 950 aa28.3■■■□□ 2.12
SHMT1-203ENST00000354098 MAP3K2Q9Y2U5 619 aa28.3■■■□□ 2.12
SHMT1-203ENST00000354098 NUP98P52948 1817 aa28.3■■■□□ 2.12
SHMT1-203ENST00000354098 NIP7Q9Y221 180 aaKnown RBP eCLIP28.29■■■□□ 2.12
SHMT1-203ENST00000354098 GPTP24298 496 aa28.29■■■□□ 2.12
SHMT1-203ENST00000354098 POLD1P28340 1107 aa28.28■■■□□ 2.12
SHMT1-203ENST00000354098 BRPF1P55201 1214 aaPredicted RBP28.28■■■□□ 2.12
SHMT1-203ENST00000354098 SETDB2Q96T68 719 aa28.28■■■□□ 2.12
SHMT1-203ENST00000354098 F6X3S4 739 aa28.27■■■□□ 2.12
SHMT1-203ENST00000354098 POLRMTO00411 1230 aaKnown RBP28.27■■■□□ 2.12
SHMT1-203ENST00000354098 TCIRG1Q13488 830 aa28.27■■■□□ 2.12
SHMT1-203ENST00000354098 ZNF34Q8IZ26 560 aa28.27■■■□□ 2.12
SHMT1-203ENST00000354098 NOB1Q9ULX3 412 aaKnown RBP28.27■■■□□ 2.12
SHMT1-203ENST00000354098 ARFGEF2Q9Y6D5 1785 aa28.27■■■□□ 2.12
SHMT1-203ENST00000354098 ATP10DQ9P241 1426 aa28.26■■■□□ 2.12
SHMT1-203ENST00000354098 PARP3Q9Y6F1 533 aa28.26■■■□□ 2.11
SHMT1-203ENST00000354098 UBN2Q6ZU65 1347 aa28.25■■■□□ 2.11
SHMT1-203ENST00000354098 ATP5J2-PTCD1G3V325 749 aa28.25■■■□□ 2.11
SHMT1-203ENST00000354098 MYD88Q99836 296 aa28.25■■■□□ 2.11
SHMT1-203ENST00000354098 METTL22Q9BUU2 404 aaPredicted RBP28.25■■■□□ 2.11
SHMT1-203ENST00000354098 SRCAPQ6ZRS2 3230 aa28.25■■■□□ 2.11
SHMT1-203ENST00000354098 HSP90AB3PQ58FF7 597 aa28.24■■■□□ 2.11
SHMT1-203ENST00000354098 RCAN3Q9UKA8 241 aa28.24■■■□□ 2.11
SHMT1-203ENST00000354098 FAM177BA6PVY3 158 aa28.23■■■□□ 2.11
SHMT1-203ENST00000354098 SERPINB2P05120 415 aa28.23■■■□□ 2.11
SHMT1-203ENST00000354098 DNAAF4Q8WXU2 420 aa28.23■■■□□ 2.11
SHMT1-203ENST00000354098 PTPRCP08575 1304 aa28.23■■■□□ 2.11
SHMT1-203ENST00000354098 CARMIL3Q8ND23 1372 aa28.23■■■□□ 2.11
SHMT1-203ENST00000354098 ISCA1Q9BUE6 129 aa28.23■■■□□ 2.11
SHMT1-203ENST00000354098 FRAT1Q92837 279 aaPredicted RBP28.22■■■□□ 2.11
SHMT1-203ENST00000354098 SUSD4Q5VX71 490 aa28.21■■■□□ 2.11
SHMT1-203ENST00000354098 NLRP10Q86W26 655 aa28.2■■■□□ 2.11
SHMT1-203ENST00000354098 KIF16BQ96L93 1317 aa28.2■■■□□ 2.1
SHMT1-203ENST00000354098 ANKRD36CQ5JPF3 1778 aa28.2■■■□□ 2.1
SHMT1-203ENST00000354098 IGKV5-2P06315 115 aa28.19■■■□□ 2.1
SHMT1-203ENST00000354098 NBPF5PQ86XG9 351 aaPredicted RBP28.19■■■□□ 2.1
SHMT1-203ENST00000354098 CWF19L2Q2TBE0 894 aaKnown RBP28.18■■■□□ 2.1
SHMT1-203ENST00000354098 SLC4A10Q6U841 1118 aa28.18■■■□□ 2.1
SHMT1-203ENST00000354098 CCDC24Q8N4L8 307 aa28.18■■■□□ 2.1
SHMT1-203ENST00000354098 NEXNQ0ZGT2 675 aa28.17■■■□□ 2.1
SHMT1-203ENST00000354098 TRIM28Q13263 835 aaKnown RBP28.17■■■□□ 2.1
SHMT1-203ENST00000354098 PARP10Q53GL7 1025 aa28.17■■■□□ 2.1
SHMT1-203ENST00000354098 TNNQ9UQP3 1299 aa28.17■■■□□ 2.1
SHMT1-203ENST00000354098 PRR5LQ6MZQ0 368 aa28.16■■■□□ 2.1
SHMT1-203ENST00000354098 AFDNP55196 1824 aaKnown RBP28.16■■■□□ 2.1
SHMT1-203ENST00000354098 BEND3Q5T5X7 828 aa28.16■■■□□ 2.1
SHMT1-203ENST00000354098 ARHGAP45Q92619 1136 aa28.16■■■□□ 2.1
SHMT1-203ENST00000354098 PPP1R1BQ9UD71 204 aaPredicted RBP28.16■■■□□ 2.1
SHMT1-203ENST00000354098 LRP5O75197 1615 aa28.15■■■□□ 2.1
SHMT1-203ENST00000354098 NTSR2O95665 410 aa28.15■■■□□ 2.1
SHMT1-203ENST00000354098 TPTE2Q6XPS3 522 aa28.15■■■□□ 2.1
SHMT1-203ENST00000354098 NUTM1Q86Y26 1132 aa28.15■■■□□ 2.1
SHMT1-203ENST00000354098 CNBD1Q8NA66 436 aa28.15■■■□□ 2.1
SHMT1-203ENST00000354098 NRXN2Q9P2S2 1712 aa28.15■■■□□ 2.1
SHMT1-203ENST00000354098 NEURL1BA8MQ27 555 aa28.14■■■□□ 2.1
SHMT1-203ENST00000354098 IPO8O15397 1037 aaKnown RBP28.14■■■□□ 2.1
SHMT1-203ENST00000354098 PPP1R42Q7Z4L9 355 aa28.14■■■□□ 2.1
SHMT1-203ENST00000354098 LINS1Q8NG48 757 aa28.14■■■□□ 2.1
SHMT1-203ENST00000354098 UTP14AQ9BVJ6 771 aaKnown RBP28.14■■■□□ 2.1
SHMT1-203ENST00000354098 API5Q9BZZ5 524 aaKnown RBP28.14■■■□□ 2.1
SHMT1-203ENST00000354098 TRIM27P14373 513 aa28.13■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms