RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 NCBP3Q53F19 620 aaKnown RBP11.63□□□□□ -0.55
USP4-202ENST00000351842 USPL1Q5W0Q7 1092 aa11.63□□□□□ -0.55
USP4-202ENST00000351842 ZPR1O75312 459 aa11.63□□□□□ -0.55
USP4-202ENST00000351842 API5Q9BZZ5 524 aaKnown RBP11.63□□□□□ -0.55
USP4-202ENST00000351842 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.63□□□□□ -0.55
USP4-202ENST00000351842 ZNF827Q17R98 1081 aa11.62□□□□□ -0.55
USP4-202ENST00000351842 NUTM1Q86Y26 1132 aa11.62□□□□□ -0.55
USP4-202ENST00000351842 ANO8Q9HCE9 1232 aaPredicted RBP11.62□□□□□ -0.55
USP4-202ENST00000351842 CT47B1P0C2W7 299 aaPredicted RBP11.62□□□□□ -0.55
USP4-202ENST00000351842 UBE3BQ7Z3V4 1068 aa11.62□□□□□ -0.55
USP4-202ENST00000351842 TEX13AQ9BXU3 409 aaPredicted RBP11.62□□□□□ -0.55
USP4-202ENST00000351842 THSD7AQ9UPZ6 1657 aa11.62□□□□□ -0.55
USP4-202ENST00000351842 FAM89AQ96GI7 184 aa11.62□□□□□ -0.55
USP4-202ENST00000351842 SRCIN1Q9C0H9 1055 aa11.62□□□□□ -0.55
USP4-202ENST00000351842 ARHGEF1Q92888 912 aaKnown RBP11.61□□□□□ -0.55
USP4-202ENST00000351842 NIP7Q9Y221 180 aaKnown RBP eCLIP11.61□□□□□ -0.55
USP4-202ENST00000351842 NBPF7P0C2Y1 421 aaPredicted RBP11.61□□□□□ -0.55
USP4-202ENST00000351842 TRAPPC3LQ5T215 181 aa11.61□□□□□ -0.55
USP4-202ENST00000351842 KSR2Q6VAB6 950 aa11.61□□□□□ -0.55
USP4-202ENST00000351842 MVPQ14764 893 aaKnown RBP11.6□□□□□ -0.55
USP4-202ENST00000351842 WNK3Q9BYP7 1800 aa11.6□□□□□ -0.55
USP4-202ENST00000351842 BTAF1O14981 1849 aa11.6□□□□□ -0.55
USP4-202ENST00000351842 A0A087WZG4 1122 aa11.6□□□□□ -0.55
USP4-202ENST00000351842 HOXB7P09629 217 aa11.6□□□□□ -0.55
USP4-202ENST00000351842 R3HDM1Q15032 1099 aaKnown RBP11.6□□□□□ -0.55
USP4-202ENST00000351842 KCPQ6ZWJ8 1503 aa11.6□□□□□ -0.55
USP4-202ENST00000351842 VSIG10Q8N0Z9 540 aa11.59□□□□□ -0.55
USP4-202ENST00000351842 ADCY9O60503 1353 aa11.59□□□□□ -0.55
USP4-202ENST00000351842 ZBTB7AO95365 584 aa11.59□□□□□ -0.55
USP4-202ENST00000351842 HCLS1P14317 486 aaPredicted RBP11.58□□□□□ -0.56
USP4-202ENST00000351842 ANP32EQ9BTT0 268 aa11.58□□□□□ -0.56
USP4-202ENST00000351842 TRMT112Q9UI30 125 aaKnown RBP11.58□□□□□ -0.56
USP4-202ENST00000351842 LRRFIP2Q9Y608 721 aaKnown RBP11.58□□□□□ -0.56
USP4-202ENST00000351842 C5P01031 1676 aa11.58□□□□□ -0.56
USP4-202ENST00000351842 UBTFL1P0CB47 393 aaPredicted RBP11.58□□□□□ -0.56
USP4-202ENST00000351842 MRC1P22897 1456 aa11.58□□□□□ -0.56
USP4-202ENST00000351842 COL15A1P39059 1388 aa11.58□□□□□ -0.56
USP4-202ENST00000351842 IGKV5-2P06315 115 aa11.58□□□□□ -0.56
USP4-202ENST00000351842 EIF5P55010 431 aaKnown RBP11.58□□□□□ -0.56
USP4-202ENST00000351842 SIL1Q9H173 461 aa11.58□□□□□ -0.56
USP4-202ENST00000351842 ATF5Q9Y2D1 282 aaPredicted RBP11.58□□□□□ -0.56
USP4-202ENST00000351842 PTPRCP08575 1304 aa11.57□□□□□ -0.56
USP4-202ENST00000351842 MYH14Q7Z406 1995 aaKnown RBP11.57□□□□□ -0.56
USP4-202ENST00000351842 IL6STP40189 918 aaPredicted RBP11.57□□□□□ -0.56
USP4-202ENST00000351842 KLHDC4Q8TBB5 520 aa11.57□□□□□ -0.56
USP4-202ENST00000351842 PLBD2Q8NHP8 589 aa11.57□□□□□ -0.56
USP4-202ENST00000351842 UPF1Q92900 1129 aaKnown RBP eCLIP11.57□□□□□ -0.56
USP4-202ENST00000351842 CHMP4AQ9BY43 222 aa11.57□□□□□ -0.56
USP4-202ENST00000351842 STK32BQ9NY57 414 aa11.57□□□□□ -0.56
USP4-202ENST00000351842 DDX19BQ9UMR2 479 aa11.57□□□□□ -0.56
USP4-202ENST00000351842 PCDHB15Q9Y5E8 787 aa11.57□□□□□ -0.56
USP4-202ENST00000351842 PDE3AQ14432 1141 aa11.56□□□□□ -0.56
USP4-202ENST00000351842 TBC1D9BQ66K14 1250 aa11.56□□□□□ -0.56
USP4-202ENST00000351842 KDM3BQ7LBC6 1761 aa11.56□□□□□ -0.56
USP4-202ENST00000351842 COL23A1Q86Y22 540 aaPredicted RBP11.56□□□□□ -0.56
USP4-202ENST00000351842 MAP3K15Q6ZN16 1313 aa11.56□□□□□ -0.56
USP4-202ENST00000351842 RPS6KA4O75676 772 aa11.56□□□□□ -0.56
USP4-202ENST00000351842 BEND3Q5T5X7 828 aa11.56□□□□□ -0.56
USP4-202ENST00000351842 LRP10Q7Z4F1 713 aa11.56□□□□□ -0.56
USP4-202ENST00000351842 CAMKK2Q96RR4 588 aa11.56□□□□□ -0.56
USP4-202ENST00000351842 METTL22Q9BUU2 404 aaPredicted RBP11.56□□□□□ -0.56
USP4-202ENST00000351842 NEURL1BA8MQ27 555 aa11.55□□□□□ -0.56
USP4-202ENST00000351842 MS4A1P11836 297 aa11.55□□□□□ -0.56
USP4-202ENST00000351842 CCT4P50991 539 aaKnown RBP11.55□□□□□ -0.56
USP4-202ENST00000351842 SLC27A3Q5K4L6 730 aa11.55□□□□□ -0.56
USP4-202ENST00000351842 NBPF5PQ86XG9 351 aaPredicted RBP11.55□□□□□ -0.56
USP4-202ENST00000351842 USP44Q9H0E7 712 aa11.55□□□□□ -0.56
USP4-202ENST00000351842 ZNF219Q9P2Y4 722 aaPredicted RBP11.55□□□□□ -0.56
USP4-202ENST00000351842 SOS1Q07889 1333 aaPredicted RBP11.55□□□□□ -0.56
USP4-202ENST00000351842 PLSCR1O15162 318 aa11.54□□□□□ -0.56
USP4-202ENST00000351842 RGS3P49796 1198 aa11.54□□□□□ -0.56
USP4-202ENST00000351842 OS9Q13438 667 aaPredicted RBP11.54□□□□□ -0.56
USP4-202ENST00000351842 SETDB2Q96T68 719 aa11.54□□□□□ -0.56
USP4-202ENST00000351842 TSHZ2Q9NRE2 1034 aa11.54□□□□□ -0.56
USP4-202ENST00000351842 CWC25Q9NXE8 425 aaPredicted RBP11.54□□□□□ -0.56
USP4-202ENST00000351842 SIPA1L3O60292 1781 aaPredicted RBP11.54□□□□□ -0.56
USP4-202ENST00000351842 LINS1Q8NG48 757 aa11.54□□□□□ -0.56
USP4-202ENST00000351842 GRM8O00222 908 aa11.54□□□□□ -0.56
USP4-202ENST00000351842 GIGYF2Q6Y7W6 1299 aaKnown RBP11.54□□□□□ -0.56
USP4-202ENST00000351842 PA2G4Q9UQ80 394 aaKnown RBP11.54□□□□□ -0.56
USP4-202ENST00000351842 EXOC6BQ9Y2D4 811 aa11.54□□□□□ -0.56
USP4-202ENST00000351842 ABCC4O15439 1325 aa11.53□□□□□ -0.56
USP4-202ENST00000351842 ZBTB7BO15156 539 aaPredicted RBP11.53□□□□□ -0.56
USP4-202ENST00000351842 SRGAP3O43295 1099 aa11.53□□□□□ -0.56
USP4-202ENST00000351842 CAMTA2O94983 1202 aa11.53□□□□□ -0.56
USP4-202ENST00000351842 TCIRG1Q13488 830 aa11.53□□□□□ -0.56
USP4-202ENST00000351842 GCKRQ14397 625 aa11.53□□□□□ -0.56
USP4-202ENST00000351842 SLC15A2Q16348 729 aa11.53□□□□□ -0.56
USP4-202ENST00000351842 SUSD4Q5VX71 490 aa11.53□□□□□ -0.56
USP4-202ENST00000351842 SBF2Q86WG5 1849 aa11.53□□□□□ -0.56
USP4-202ENST00000351842 UBN2Q6ZU65 1347 aa11.53□□□□□ -0.56
USP4-202ENST00000351842 EPHA10Q5JZY3 1008 aa11.52□□□□□ -0.56
USP4-202ENST00000351842 ARHGAP45Q92619 1136 aa11.52□□□□□ -0.56
USP4-202ENST00000351842 SUCLG2Q96I99 432 aa11.52□□□□□ -0.56
USP4-202ENST00000351842 BICC1Q9H694 974 aaKnown RBP11.52□□□□□ -0.56
USP4-202ENST00000351842 ZNF652Q9Y2D9 606 aa11.52□□□□□ -0.56
USP4-202ENST00000351842 IGHDP01880 384 aa11.52□□□□□ -0.57
USP4-202ENST00000351842 MMP10P09238 476 aa11.52□□□□□ -0.57
USP4-202ENST00000351842 ZNF594Q96JF6 807 aaPredicted RBP11.52□□□□□ -0.57
USP4-202ENST00000351842 RNF123Q5XPI4 1314 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms