RNA–Protein interactions for RNA: ENST00000344726.9

HMGN3-202, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN3, Length 872 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-202ENST00000344726 TRIM35Q9UPQ4 493 aa18.99■□□□□ 0.63
HMGN3-202ENST00000344726 SBF1O95248 1867 aa18.98■□□□□ 0.63
HMGN3-202ENST00000344726 PRELPP51888 382 aa18.97■□□□□ 0.63
HMGN3-202ENST00000344726 SETDB2Q96T68 719 aa18.97■□□□□ 0.63
HMGN3-202ENST00000344726 TSPYL4Q9UJ04 414 aa18.97■□□□□ 0.63
HMGN3-202ENST00000344726 NUP98P52948 1817 aa18.96■□□□□ 0.63
HMGN3-202ENST00000344726 RASSF7Q02833 373 aa18.96■□□□□ 0.63
HMGN3-202ENST00000344726 LMOD3Q0VAK6 560 aa18.96■□□□□ 0.63
HMGN3-202ENST00000344726 HLFQ16534 295 aa18.96■□□□□ 0.63
HMGN3-202ENST00000344726 C9orf131Q5VYM1 1079 aa18.96■□□□□ 0.63
HMGN3-202ENST00000344726 NPM2Q86SE8 214 aaKnown RBP18.96■□□□□ 0.63
HMGN3-202ENST00000344726 CLEC4GQ6UXB4 293 aa18.95■□□□□ 0.62
HMGN3-202ENST00000344726 BRIP1Q9BX63 1249 aa18.95■□□□□ 0.62
HMGN3-202ENST00000344726 H0YIN7 160 aa18.94■□□□□ 0.62
HMGN3-202ENST00000344726 KIF3CO14782 793 aa18.94■□□□□ 0.62
HMGN3-202ENST00000344726 TTLL6Q8N841 843 aa18.94■□□□□ 0.62
HMGN3-202ENST00000344726 CNBD1Q8NA66 436 aa18.94■□□□□ 0.62
HMGN3-202ENST00000344726 CACNA1SQ13698 1873 aa18.93■□□□□ 0.62
HMGN3-202ENST00000344726 TTLL7Q6ZT98 887 aa18.93■□□□□ 0.62
HMGN3-202ENST00000344726 NGEFQ8N5V2 710 aa18.93■□□□□ 0.62
HMGN3-202ENST00000344726 BABAM1Q9NWV8 329 aa18.93■□□□□ 0.62
HMGN3-202ENST00000344726 ARFGEF2Q9Y6D5 1785 aa18.93■□□□□ 0.62
HMGN3-202ENST00000344726 TNRC6CQ9HCJ0 1690 aaKnown RBP18.92■□□□□ 0.62
HMGN3-202ENST00000344726 SENP3-EIF4A1A0A087X0R7 540 aa18.92■□□□□ 0.62
HMGN3-202ENST00000344726 PDE6BP35913 854 aa18.92■□□□□ 0.62
HMGN3-202ENST00000344726 RNF181Q9P0P0 153 aa18.92■□□□□ 0.62
HMGN3-202ENST00000344726 SLX4Q8IY92 1834 aa18.91■□□□□ 0.62
HMGN3-202ENST00000344726 CHL1O00533 1208 aa18.91■□□□□ 0.62
HMGN3-202ENST00000344726 APAF1O14727 1248 aa18.91■□□□□ 0.62
HMGN3-202ENST00000344726 RGL2O15211 777 aa18.91■□□□□ 0.62
HMGN3-202ENST00000344726 MYL6BP14649 208 aa18.91■□□□□ 0.62
HMGN3-202ENST00000344726 LRP10Q7Z4F1 713 aa18.91■□□□□ 0.62
HMGN3-202ENST00000344726 ZNF622Q969S3 477 aaKnown RBP eCLIP18.91■□□□□ 0.628e-7■□□□□ 8.8
HMGN3-202ENST00000344726 NIP7Q9Y221 180 aaKnown RBP eCLIP18.91■□□□□ 0.62
HMGN3-202ENST00000344726 ZNF652Q9Y2D9 606 aa18.91■□□□□ 0.62
HMGN3-202ENST00000344726 NFKBIEO00221 500 aa18.9■□□□□ 0.62
HMGN3-202ENST00000344726 PDIA6Q15084 440 aa18.9■□□□□ 0.62
HMGN3-202ENST00000344726 KRT24Q2M2I5 525 aa18.9■□□□□ 0.62
HMGN3-202ENST00000344726 NBPF5PQ86XG9 351 aaPredicted RBP18.9■□□□□ 0.62
HMGN3-202ENST00000344726 TIAM2Q8IVF5 1701 aa18.9■□□□□ 0.62
HMGN3-202ENST00000344726 FER1L6Q2WGJ9 1857 aa18.9■□□□□ 0.62
HMGN3-202ENST00000344726 FAM177BA6PVY3 158 aa18.89■□□□□ 0.61
HMGN3-202ENST00000344726 SRGNP10124 158 aa18.89■□□□□ 0.61
HMGN3-202ENST00000344726 ST5P78524 1137 aa18.89■□□□□ 0.61
HMGN3-202ENST00000344726 PROSER3Q2NL68 480 aa18.89■□□□□ 0.61
HMGN3-202ENST00000344726 NMRK2Q9NPI5 230 aa18.89■□□□□ 0.61
HMGN3-202ENST00000344726 MAP3K15Q6ZN16 1313 aa18.89■□□□□ 0.61
HMGN3-202ENST00000344726 CCDC88AQ3V6T2 1871 aa18.88■□□□□ 0.61
HMGN3-202ENST00000344726 ANXA1P04083 346 aa18.88■□□□□ 0.61
HMGN3-202ENST00000344726 ZNF219Q9P2Y4 722 aaPredicted RBP18.88■□□□□ 0.61
HMGN3-202ENST00000344726 LAS1LQ9Y4W2 734 aaKnown RBP18.88■□□□□ 0.61
HMGN3-202ENST00000344726 ABCC12Q96J65 1359 aa18.88■□□□□ 0.61
HMGN3-202ENST00000344726 NPHP1O15259 732 aa18.87■□□□□ 0.61
HMGN3-202ENST00000344726 C21orf2O43822 256 aa18.87■□□□□ 0.61
HMGN3-202ENST00000344726 EIF2S2P20042 333 aaKnown RBP18.87■□□□□ 0.61
HMGN3-202ENST00000344726 ERBB4Q15303 1308 aa18.87■□□□□ 0.61
HMGN3-202ENST00000344726 UBN2Q6ZU65 1347 aa18.87■□□□□ 0.61
HMGN3-202ENST00000344726 ZBTB3Q9H5J0 574 aa18.87■□□□□ 0.61
HMGN3-202ENST00000344726 PDZRN3Q9UPQ7 1066 aa18.87■□□□□ 0.61
HMGN3-202ENST00000344726 KLRG2A4D1S0 409 aaPredicted RBP18.86■□□□□ 0.61
HMGN3-202ENST00000344726 ERVV-1B6SEH8 477 aa18.86■□□□□ 0.61
HMGN3-202ENST00000344726 STYK1Q6J9G0 422 aa18.86■□□□□ 0.61
HMGN3-202ENST00000344726 ANP32CO43423 234 aa18.85■□□□□ 0.61
HMGN3-202ENST00000344726 PRPF40BQ6NWY9 871 aaKnown RBP18.85■□□□□ 0.61
HMGN3-202ENST00000344726 TPTE2Q6XPS3 522 aa18.85■□□□□ 0.61
HMGN3-202ENST00000344726 KIF6Q6ZMV9 814 aa18.85■□□□□ 0.61
HMGN3-202ENST00000344726 NECTIN2Q92692 538 aa18.85■□□□□ 0.61
HMGN3-202ENST00000344726 MASTLQ96GX5 879 aa18.85■□□□□ 0.61
HMGN3-202ENST00000344726 CFAP44Q96MT7 982 aa18.85■□□□□ 0.61
HMGN3-202ENST00000344726 ZNF853P0CG23 659 aa18.84■□□□□ 0.61
HMGN3-202ENST00000344726 LMNB1P20700 586 aa18.84■□□□□ 0.61
HMGN3-202ENST00000344726 NUTM1Q86Y26 1132 aa18.84■□□□□ 0.61
HMGN3-202ENST00000344726 CEP350Q5VT06 3117 aa18.84■□□□□ 0.61
HMGN3-202ENST00000344726 GPTP24298 496 aa18.83■□□□□ 0.6
HMGN3-202ENST00000344726 ZNF34Q8IZ26 560 aa18.83■□□□□ 0.6
HMGN3-202ENST00000344726 C7orf43Q8WVR3 580 aa18.83■□□□□ 0.6
HMGN3-202ENST00000344726 CNKSR1Q969H4 720 aa18.83■□□□□ 0.6
HMGN3-202ENST00000344726 MRS2Q9HD23 443 aa18.83■□□□□ 0.6
HMGN3-202ENST00000344726 MBIPQ9NS73 344 aa18.83■□□□□ 0.6
HMGN3-202ENST00000344726 ANKRD36CQ5JPF3 1778 aa18.83■□□□□ 0.6
HMGN3-202ENST00000344726 ERFEQ4G0M1 354 aa18.82■□□□□ 0.6
HMGN3-202ENST00000344726 SUSD4Q5VX71 490 aa18.82■□□□□ 0.6
HMGN3-202ENST00000344726 OLFM4Q6UX06 510 aa18.82■□□□□ 0.6
HMGN3-202ENST00000344726 GIGYF2Q6Y7W6 1299 aaKnown RBP18.82■□□□□ 0.6
HMGN3-202ENST00000344726 DICER1Q9UPY3 1922 aaKnown RBP18.82■□□□□ 0.6
HMGN3-202ENST00000344726 IBTKQ9P2D0 1353 aaPredicted RBP18.81■□□□□ 0.6
HMGN3-202ENST00000344726 ZC3H4Q9UPT8 1303 aaKnown RBP18.8■□□□□ 0.6
HMGN3-202ENST00000344726 NTSR2O95665 410 aa18.8■□□□□ 0.6
HMGN3-202ENST00000344726 NPR1P16066 1061 aa18.8■□□□□ 0.6
HMGN3-202ENST00000344726 IFT57Q9NWB7 429 aa18.8■□□□□ 0.6
HMGN3-202ENST00000344726 RIC1Q4ADV7 1423 aa18.8■□□□□ 0.6
HMGN3-202ENST00000344726 LTBP3Q9NS15 1303 aa18.79■□□□□ 0.6
HMGN3-202ENST00000344726 CRY2Q49AN0 593 aa18.79■□□□□ 0.6
HMGN3-202ENST00000344726 C3orf67Q6ZVT6 689 aa18.79■□□□□ 0.6
HMGN3-202ENST00000344726 SLC51AQ86UW1 340 aa18.79■□□□□ 0.6
HMGN3-202ENST00000344726 XAGE3Q8WTP9 111 aa18.79■□□□□ 0.6
HMGN3-202ENST00000344726 RRAGCQ9HB90 399 aa18.79■□□□□ 0.6
HMGN3-202ENST00000344726 SNED1Q8TER0 1413 aa18.79■□□□□ 0.6
HMGN3-202ENST00000344726 KDM2BQ8NHM5 1336 aa18.78■□□□□ 0.6
HMGN3-202ENST00000344726 TOMM70O94826 608 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms