RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 AK9Q5TCS8 1911 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 ERLIN2O94905 339 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 DMTNQ08495 405 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 FERMT3Q86UX7 667 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 CCDC69A6NI79 296 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 KANK3Q6NY19 840 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 CEP152O94986 1710 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 GTF2F1P35269 517 aaKnown RBP eCLIP5.56□□□□□ -1.52
CSMD3-203ENST00000343508 IMMTQ16891 758 aaKnown RBP5.56□□□□□ -1.52
CSMD3-203ENST00000343508 LRRFIP2Q9Y608 721 aaKnown RBP5.56□□□□□ -1.52
CSMD3-203ENST00000343508 DISP1Q96F81 1524 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 PLCH2O75038 1416 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 FAM193AP78312 1265 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 DNM1Q05193 864 aaKnown RBP5.56□□□□□ -1.52
CSMD3-203ENST00000343508 DACT1Q9NYF0 836 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 SLC3A2P08195 630 aaKnown RBP5.56□□□□□ -1.52
CSMD3-203ENST00000343508 MCM10Q7L590 875 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 CCAR1Q8IX12 1150 aaKnown RBP5.56□□□□□ -1.52
CSMD3-203ENST00000343508 RAPGEF4Q8WZA2 1011 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 C8orf76Q96K31 380 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 TTC41PQ6P2S7 1318 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 ZNF521Q96K83 1311 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 POLR3GO15318 223 aaPredicted RBP5.56□□□□□ -1.52
CSMD3-203ENST00000343508 NLRP6P59044 892 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 ABCC1P33527 1531 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 TMC6Q7Z403 805 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 ABTB2Q8N961 1025 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 KCNG4Q8TDN1 519 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 SIL1Q9H173 461 aa5.56□□□□□ -1.52
CSMD3-203ENST00000343508 REREQ9P2R6 1566 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 TUBBP07437 444 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 LMAN1P49257 510 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 TYRO3Q06418 890 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 TTC39AQ5SRH9 613 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 CNNM3Q8NE01 707 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 GIMAP7Q8NHV1 300 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 MEIS3Q99687 375 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 CLSTN1O94985 981 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 RUFY3Q7L099 469 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 DNAAF4Q8WXU2 420 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 NEK1Q96PY6 1258 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 CARD14Q9BXL6 1004 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 RIOK3O14730 519 aaKnown RBP5.55□□□□□ -1.52
CSMD3-203ENST00000343508 CEP112Q8N8E3 955 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 NUDT16Q96DE0 195 aaKnown RBP5.55□□□□□ -1.52
CSMD3-203ENST00000343508 SOS1Q07889 1333 aaPredicted RBP5.55□□□□□ -1.52
CSMD3-203ENST00000343508 NPHP3Q7Z494 1330 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 TRPM2O94759 1503 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 TAF7Q15545 349 aaPredicted RBP5.55□□□□□ -1.52
CSMD3-203ENST00000343508 TARBP1Q13395 1621 aaKnown RBP5.55□□□□□ -1.52
CSMD3-203ENST00000343508 UBASH3AP57075 661 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 PIP4K2BP78356 416 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 KIF4BQ2VIQ3 1234 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 C16orf71Q8IYS4 520 aaPredicted RBP5.55□□□□□ -1.52
CSMD3-203ENST00000343508 VAMP4O75379 141 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 CEP85Q6P2H3 762 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 CTAGE1Q96RT6 745 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 THUMPD2Q9BTF0 503 aaKnown RBP5.55□□□□□ -1.52
CSMD3-203ENST00000343508 PIK3R4Q99570 1358 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 F6X3S4 739 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 KIAA1328Q86T90 577 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 SPG7Q9UQ90 795 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 SSH2Q76I76 1423 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 ZNF518AQ6AHZ1 1483 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 U2AF2P26368 475 aaKnown RBP eCLIP5.55□□□□□ -1.52
CSMD3-203ENST00000343508 ODF2Q5BJF6 829 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 ERO1AQ96HE7 468 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 AK2P54819 239 aa5.55□□□□□ -1.52
CSMD3-203ENST00000343508 PTGS1P23219 599 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 VPS37DQ86XT2 251 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 TRAPPC8Q9Y2L5 1435 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 MAGI2Q86UL8 1455 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 CCDC196A0A1B0GTZ2 297 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 GTF2A1P52655 376 aaPredicted RBP5.54□□□□□ -1.52
CSMD3-203ENST00000343508 RIMS2Q9UQ26 1411 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 QRICH2Q9H0J4 1663 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 MSH6P52701 1360 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 RASSF4Q9H2L5 321 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 MAP3K4Q9Y6R4 1608 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 SAMD9LQ8IVG5 1584 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 CFAP74Q9C0B2 1584 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 ZNF608Q9ULD9 1512 aaPredicted RBP5.54□□□□□ -1.52
CSMD3-203ENST00000343508 FYB1O15117 783 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 EHBP1Q8NDI1 1231 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 ECHDC1Q9NTX5 307 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 AKAP2Q9Y2D5 859 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 RRP12Q5JTH9 1297 aaKnown RBP5.54□□□□□ -1.52
CSMD3-203ENST00000343508 FAM135BQ49AJ0 1406 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 NACAP1Q9BZK3 213 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 TMEM63CQ9P1W3 806 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 TNNQ9UQP3 1299 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 CTAGE9A4FU28 777 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 CHMLP26374 656 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 TXNDC2Q86VQ3 553 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 FSIP1Q8NA03 581 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 SMARCC1Q92922 1105 aaPredicted RBP5.54□□□□□ -1.52
CSMD3-203ENST00000343508 PYM1Q9BRP8 204 aaKnown RBP5.54□□□□□ -1.52
CSMD3-203ENST00000343508 UNC13BO14795 1591 aa5.54□□□□□ -1.52
CSMD3-203ENST00000343508 TFIP11Q9UBB9 837 aaKnown RBP5.53□□□□□ -1.52
CSMD3-203ENST00000343508 PDE4CQ08493 712 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms