RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 SRGAP2BP0DMP2 458 aa10.02□□□□□ -0.81
HMGB1-203ENST00000341423 SLC15A2Q16348 729 aa10.02□□□□□ -0.81
HMGB1-203ENST00000341423 PRKCSHP14314 528 aaPredicted RBP10.02□□□□□ -0.81
HMGB1-203ENST00000341423 STK11IPQ8N1F8 1099 aa10.02□□□□□ -0.81
HMGB1-203ENST00000341423 TANGO6Q9C0B7 1094 aa10.02□□□□□ -0.81
HMGB1-203ENST00000341423 PDCL3Q9H2J4 239 aa10.02□□□□□ -0.81
HMGB1-203ENST00000341423 LRFN2Q9ULH4 789 aa10.02□□□□□ -0.81
HMGB1-203ENST00000341423 PPIP5K1Q6PFW1 1433 aa10.01□□□□□ -0.81
HMGB1-203ENST00000341423 PRC1O43663 620 aa10.01□□□□□ -0.81
HMGB1-203ENST00000341423 SSTR3P32745 418 aaPredicted RBP10.01□□□□□ -0.81
HMGB1-203ENST00000341423 TAF1CQ15572 869 aaPredicted RBP10.01□□□□□ -0.81
HMGB1-203ENST00000341423 ZFYVE27Q5T4F4 411 aa10.01□□□□□ -0.81
HMGB1-203ENST00000341423 MFSD14CQ5VZR4 134 aa10.01□□□□□ -0.81
HMGB1-203ENST00000341423 ANKRD13DQ6ZTN6 518 aa10.01□□□□□ -0.81
HMGB1-203ENST00000341423 HACE1Q8IYU2 909 aa10.01□□□□□ -0.81
HMGB1-203ENST00000341423 ANGEL1Q9UNK9 670 aaKnown RBP10.01□□□□□ -0.81
HMGB1-203ENST00000341423 KCNJ6P48051 423 aa10.01□□□□□ -0.81
HMGB1-203ENST00000341423 SEC24BO95487 1268 aa10.01□□□□□ -0.81
HMGB1-203ENST00000341423 FSD1Q9BTV5 496 aa10.01□□□□□ -0.81
HMGB1-203ENST00000341423 UQCRHLA0A096LP55 91 aa10.01□□□□□ -0.81
HMGB1-203ENST00000341423 ABI1Q8IZP0 508 aa10.01□□□□□ -0.81
HMGB1-203ENST00000341423 RRAGCQ9HB90 399 aa10.01□□□□□ -0.81
HMGB1-203ENST00000341423 KBTBD13C9JR72 458 aa10□□□□□ -0.81
HMGB1-203ENST00000341423 LMNB1P20700 586 aa10□□□□□ -0.81
HMGB1-203ENST00000341423 HS1BP3Q53T59 392 aa10□□□□□ -0.81
HMGB1-203ENST00000341423 RNF216Q9NWF9 866 aaPredicted RBP10□□□□□ -0.81
HMGB1-203ENST00000341423 SIL1Q9H173 461 aa10□□□□□ -0.81
HMGB1-203ENST00000341423 H3BQV1 296 aa10□□□□□ -0.81
HMGB1-203ENST00000341423 C21orf2O43822 256 aa10□□□□□ -0.81
HMGB1-203ENST00000341423 IFFO2Q5TF58 517 aa10□□□□□ -0.81
HMGB1-203ENST00000341423 CLUAP1Q96AJ1 413 aa10□□□□□ -0.81
HMGB1-203ENST00000341423 SURF6O75683 361 aaKnown RBP10□□□□□ -0.81
HMGB1-203ENST00000341423 ARHGEF10LQ9HCE6 1279 aa10□□□□□ -0.81
HMGB1-203ENST00000341423 LOC102724428A0A0B4J2F2 783 aa10□□□□□ -0.81
HMGB1-203ENST00000341423 SIK1P57059 783 aa10□□□□□ -0.81
HMGB1-203ENST00000341423 CDC37L1Q7L3B6 337 aa9.99□□□□□ -0.81
HMGB1-203ENST00000341423 DBF4Q9UBU7 674 aaPredicted RBP9.99□□□□□ -0.81
HMGB1-203ENST00000341423 TSPOAP1O95153 1857 aa9.99□□□□□ -0.81
HMGB1-203ENST00000341423 NBPF20Q3BBV1 942 aa9.99□□□□□ -0.81
HMGB1-203ENST00000341423 CRNKL1Q9BZJ0 848 aaKnown RBP9.99□□□□□ -0.81
HMGB1-203ENST00000341423 FOXD4L1Q9NU39 408 aa9.99□□□□□ -0.81
HMGB1-203ENST00000341423 NOP56O00567 594 aaKnown RBP9.99□□□□□ -0.81
HMGB1-203ENST00000341423 TNPO2O14787 897 aaKnown RBP9.99□□□□□ -0.81
HMGB1-203ENST00000341423 ZBED4O75132 1171 aa9.99□□□□□ -0.81
HMGB1-203ENST00000341423 CA12O43570 354 aa9.99□□□□□ -0.81
HMGB1-203ENST00000341423 RUFY4Q6ZNE9 571 aa9.99□□□□□ -0.81
HMGB1-203ENST00000341423 TTC6Q86TZ1 520 aa9.99□□□□□ -0.81
HMGB1-203ENST00000341423 RSPH3Q86UC2 560 aa9.99□□□□□ -0.81
HMGB1-203ENST00000341423 SAMM50Q9Y512 469 aa9.99□□□□□ -0.81
HMGB1-203ENST00000341423 LRRC9Q6ZRR7 1453 aa9.98□□□□□ -0.81
HMGB1-203ENST00000341423 KCTD2Q14681 263 aa9.98□□□□□ -0.81
HMGB1-203ENST00000341423 NFATC2IPQ8NCF5 419 aa9.98□□□□□ -0.81
HMGB1-203ENST00000341423 RAB23Q9ULC3 237 aa9.98□□□□□ -0.81
HMGB1-203ENST00000341423 MASTLQ96GX5 879 aa9.98□□□□□ -0.81
HMGB1-203ENST00000341423 ERO1AQ96HE7 468 aa9.98□□□□□ -0.81
HMGB1-203ENST00000341423 FAM193BQ96PV7 902 aaPredicted RBP9.98□□□□□ -0.81
HMGB1-203ENST00000341423 CARD10Q9BWT7 1032 aa9.98□□□□□ -0.81
HMGB1-203ENST00000341423 FHDC1Q9C0D6 1143 aaPredicted RBP9.98□□□□□ -0.81
HMGB1-203ENST00000341423 SH3TC1Q8TE82 1336 aa9.98□□□□□ -0.81
HMGB1-203ENST00000341423 SCAF11Q99590 1463 aaKnown RBP9.98□□□□□ -0.81
HMGB1-203ENST00000341423 IGFBP4P22692 258 aa9.98□□□□□ -0.81
HMGB1-203ENST00000341423 MVPQ14764 893 aaKnown RBP9.98□□□□□ -0.81
HMGB1-203ENST00000341423 GAS2L1Q99501 681 aaPredicted RBP9.98□□□□□ -0.81
HMGB1-203ENST00000341423 RSPH6AQ9H0K4 717 aa9.98□□□□□ -0.81
HMGB1-203ENST00000341423 RUNDC1Q96C34 613 aa9.98□□□□□ -0.81
HMGB1-203ENST00000341423 MINDY4BA8MYZ0 360 aa9.97□□□□□ -0.81
HMGB1-203ENST00000341423 NPR1P16066 1061 aa9.97□□□□□ -0.81
HMGB1-203ENST00000341423 TBC1D22AQ8WUA7 517 aa9.97□□□□□ -0.81
HMGB1-203ENST00000341423 EPS15P42566 896 aa9.97□□□□□ -0.81
HMGB1-203ENST00000341423 EXOC4Q96A65 974 aa9.97□□□□□ -0.81
HMGB1-203ENST00000341423 LDHBP07195 334 aaKnown RBP9.97□□□□□ -0.81
HMGB1-203ENST00000341423 LTKP29376 864 aa9.97□□□□□ -0.81
HMGB1-203ENST00000341423 PTPRMP28827 1452 aa9.97□□□□□ -0.81
HMGB1-203ENST00000341423 ACTN1P12814 892 aa9.97□□□□□ -0.81
HMGB1-203ENST00000341423 TPM4P67936 248 aa9.97□□□□□ -0.81
HMGB1-203ENST00000341423 PDE4BQ07343 736 aa9.97□□□□□ -0.81
HMGB1-203ENST00000341423 SLC9C1Q4G0N8 1177 aa9.97□□□□□ -0.81
HMGB1-203ENST00000341423 CPLX3Q8WVH0 158 aa9.96□□□□□ -0.81
HMGB1-203ENST00000341423 ZHX3Q9H4I2 956 aa9.96□□□□□ -0.81
HMGB1-203ENST00000341423 EFCC1Q9HA90 598 aa9.96□□□□□ -0.81
HMGB1-203ENST00000341423 BMP2KQ9NSY1 1161 aaPredicted RBP9.96□□□□□ -0.81
HMGB1-203ENST00000341423 AATKQ6ZMQ8 1374 aa9.96□□□□□ -0.81
HMGB1-203ENST00000341423 SLC4A2P04920 1241 aa9.96□□□□□ -0.82
HMGB1-203ENST00000341423 CCDC82Q8N4S0 544 aa9.96□□□□□ -0.82
HMGB1-203ENST00000341423 NKX2-3Q8TAU0 364 aa9.96□□□□□ -0.82
HMGB1-203ENST00000341423 LRRCC1Q9C099 1032 aa9.96□□□□□ -0.82
HMGB1-203ENST00000341423 MFSD1Q9H3U5 465 aa9.96□□□□□ -0.82
HMGB1-203ENST00000341423 RAD17O75943 681 aa9.95□□□□□ -0.82
HMGB1-203ENST00000341423 TSR1Q2NL82 804 aaKnown RBP9.95□□□□□ -0.82
HMGB1-203ENST00000341423 IP6K1Q92551 441 aa9.95□□□□□ -0.82
HMGB1-203ENST00000341423 FBXO3Q9UK99 471 aa9.95□□□□□ -0.82
HMGB1-203ENST00000341423 TXLNAP40222 546 aa9.95□□□□□ -0.82
HMGB1-203ENST00000341423 MLLT1Q03111 559 aaPredicted RBP9.95□□□□□ -0.82
HMGB1-203ENST00000341423 CCDC24Q8N4L8 307 aa9.95□□□□□ -0.82
HMGB1-203ENST00000341423 EIF5P55010 431 aaKnown RBP9.95□□□□□ -0.82
HMGB1-203ENST00000341423 IQCA1Q86XH1 822 aa9.95□□□□□ -0.82
HMGB1-203ENST00000341423 IGSF1Q8N6C5 1336 aa9.95□□□□□ -0.82
HMGB1-203ENST00000341423 PPEF1O14829 653 aaPredicted RBP9.95□□□□□ -0.82
HMGB1-203ENST00000341423 RGS3P49796 1198 aa9.95□□□□□ -0.82
HMGB1-203ENST00000341423 KMT5BQ4FZB7 885 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 136.6 ms