RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 USP42Q9H9J4 1324 aaKnown RBP28.31■■■□□ 2.12
SDC3-202ENST00000339394 USPL1Q5W0Q7 1092 aa28.3■■■□□ 2.12
SDC3-202ENST00000339394 MAP3K15Q6ZN16 1313 aa28.3■■■□□ 2.12
SDC3-202ENST00000339394 PSDA5PKW4 1024 aaPredicted RBP28.29■■■□□ 2.12
SDC3-202ENST00000339394 ERVV-1B6SEH8 477 aa28.29■■■□□ 2.12
SDC3-202ENST00000339394 DDX58O95786 925 aaKnown RBP28.29■■■□□ 2.12
SDC3-202ENST00000339394 PLBD2Q8NHP8 589 aa28.28■■■□□ 2.12
SDC3-202ENST00000339394 PTPRCP08575 1304 aa28.28■■■□□ 2.12
SDC3-202ENST00000339394 KIF16BQ96L93 1317 aa28.28■■■□□ 2.12
SDC3-202ENST00000339394 PI4KAP2A4QPH2 592 aa28.28■■■□□ 2.12
SDC3-202ENST00000339394 HLFQ16534 295 aa28.28■■■□□ 2.12
SDC3-202ENST00000339394 PI4KAP1Q8N8J0 262 aa28.28■■■□□ 2.12
SDC3-202ENST00000339394 KSR2Q6VAB6 950 aa28.27■■■□□ 2.12
SDC3-202ENST00000339394 RIC3Q7Z5B4 369 aa28.27■■■□□ 2.12
SDC3-202ENST00000339394 FRAT1Q92837 279 aaPredicted RBP28.27■■■□□ 2.12
SDC3-202ENST00000339394 BCL2L12Q9HB09 334 aa28.27■■■□□ 2.12
SDC3-202ENST00000339394 TUBGCP6Q96RT7 1819 aa28.26■■■□□ 2.11
SDC3-202ENST00000339394 GYS1P13807 737 aa28.26■■■□□ 2.11
SDC3-202ENST00000339394 ADCY9O60503 1353 aa28.25■■■□□ 2.11
SDC3-202ENST00000339394 CLEC4GQ6UXB4 293 aa28.24■■■□□ 2.11
SDC3-202ENST00000339394 GIGYF2Q6Y7W6 1299 aaKnown RBP28.24■■■□□ 2.11
SDC3-202ENST00000339394 MAP3K2Q9Y2U5 619 aa28.24■■■□□ 2.11
SDC3-202ENST00000339394 F6X3S4 739 aa28.24■■■□□ 2.11
SDC3-202ENST00000339394 ARHGAP45Q92619 1136 aa28.24■■■□□ 2.11
SDC3-202ENST00000339394 IPO8O15397 1037 aaKnown RBP28.23■■■□□ 2.11
SDC3-202ENST00000339394 FKBP8Q14318 412 aa28.23■■■□□ 2.11
SDC3-202ENST00000339394 ZNF652Q9Y2D9 606 aa28.23■■■□□ 2.11
SDC3-202ENST00000339394 RGL2O15211 777 aa28.22■■■□□ 2.11
SDC3-202ENST00000339394 SLC16A10Q8TF71 515 aa28.22■■■□□ 2.11
SDC3-202ENST00000339394 QSER1Q2KHR3 1735 aa28.22■■■□□ 2.11
SDC3-202ENST00000339394 C4AP0C0L4 1744 aa28.21■■■□□ 2.11
SDC3-202ENST00000339394 ZKSCAN2Q63HK3 967 aa28.2■■■□□ 2.11
SDC3-202ENST00000339394 ATF7IPQ6VMQ6 1270 aa28.2■■■□□ 2.11
SDC3-202ENST00000339394 DNAAF4Q8WXU2 420 aa28.2■■■□□ 2.11
SDC3-202ENST00000339394 TRIM27P14373 513 aa28.2■■■□□ 2.1
SDC3-202ENST00000339394 NLGN1Q8N2Q7 840 aa28.2■■■□□ 2.1
SDC3-202ENST00000339394 METTL22Q9BUU2 404 aaPredicted RBP28.2■■■□□ 2.1
SDC3-202ENST00000339394 API5Q9BZZ5 524 aaKnown RBP28.2■■■□□ 2.1
SDC3-202ENST00000339394 CACNA1FO60840 1977 aa28.19■■■□□ 2.1
SDC3-202ENST00000339394 TCIRG1Q13488 830 aa28.19■■■□□ 2.1
SDC3-202ENST00000339394 MSL1Q68DK7 614 aa28.19■■■□□ 2.1
SDC3-202ENST00000339394 PLIN1O60240 522 aa28.18■■■□□ 2.1
SDC3-202ENST00000339394 HSP90AB3PQ58FF7 597 aa28.18■■■□□ 2.1
SDC3-202ENST00000339394 TBC1D9BQ66K14 1250 aa28.18■■■□□ 2.1
SDC3-202ENST00000339394 ZBTB7AO95365 584 aa28.17■■■□□ 2.1
SDC3-202ENST00000339394 CENPBP07199 599 aaPredicted RBP28.17■■■□□ 2.1
SDC3-202ENST00000339394 MYD88Q99836 296 aa28.17■■■□□ 2.1
SDC3-202ENST00000339394 SLC4A10Q6U841 1118 aa28.16■■■□□ 2.1
SDC3-202ENST00000339394 BICDL1Q6ZP65 573 aa28.16■■■□□ 2.1
SDC3-202ENST00000339394 ZNF34Q8IZ26 560 aa28.16■■■□□ 2.1
SDC3-202ENST00000339394 TNNQ9UQP3 1299 aa28.16■■■□□ 2.1
SDC3-202ENST00000339394 ATP5J2-PTCD1G3V325 749 aa28.16■■■□□ 2.1
SDC3-202ENST00000339394 GPTP24298 496 aa28.16■■■□□ 2.1
SDC3-202ENST00000339394 NFIXQ14938 502 aa28.16■■■□□ 2.1
SDC3-202ENST00000339394 NIP7Q9Y221 180 aaKnown RBP eCLIP28.16■■■□□ 2.1
SDC3-202ENST00000339394 SCN7AQ01118 1682 aa28.15■■■□□ 2.1
SDC3-202ENST00000339394 NEXNQ0ZGT2 675 aa28.15■■■□□ 2.1
SDC3-202ENST00000339394 CLUAP1Q96AJ1 413 aa28.15■■■□□ 2.1
SDC3-202ENST00000339394 MTFR1LQ9H019 292 aa28.15■■■□□ 2.1
SDC3-202ENST00000339394 ATP10DQ9P241 1426 aa28.14■■■□□ 2.1
SDC3-202ENST00000339394 TM4SF1P30408 202 aa28.14■■■□□ 2.1
SDC3-202ENST00000339394 BEND3Q5T5X7 828 aa28.14■■■□□ 2.1
SDC3-202ENST00000339394 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.14■■■□□ 2.1
SDC3-202ENST00000339394 SETDB2Q96T68 719 aa28.14■■■□□ 2.1
SDC3-202ENST00000339394 ISCA1Q9BUE6 129 aa28.14■■■□□ 2.1
SDC3-202ENST00000339394 IGKV5-2P06315 115 aa28.13■■■□□ 2.09
SDC3-202ENST00000339394 BCORQ6W2J9 1755 aa28.13■■■□□ 2.09
SDC3-202ENST00000339394 TRIM28Q13263 835 aaKnown RBP28.12■■■□□ 2.09
SDC3-202ENST00000339394 ATF5Q9Y2D1 282 aaPredicted RBP28.12■■■□□ 2.09
SDC3-202ENST00000339394 SUPT16HQ9Y5B9 1047 aaKnown RBP28.12■■■□□ 2.09
SDC3-202ENST00000339394 UBN2Q6ZU65 1347 aa28.12■■■□□ 2.09
SDC3-202ENST00000339394 CASZ1Q86V15 1759 aa28.12■■■□□ 2.09
SDC3-202ENST00000339394 RRP1P56182 461 aaKnown RBP28.11■■■□□ 2.09
SDC3-202ENST00000339394 CWF19L2Q2TBE0 894 aaKnown RBP28.11■■■□□ 2.09
SDC3-202ENST00000339394 LINS1Q8NG48 757 aa28.11■■■□□ 2.09
SDC3-202ENST00000339394 ABCC4O15439 1325 aa28.11■■■□□ 2.09
SDC3-202ENST00000339394 MMP10P09238 476 aa28.11■■■□□ 2.09
SDC3-202ENST00000339394 NLRP10Q86W26 655 aa28.11■■■□□ 2.09
SDC3-202ENST00000339394 FTSJ3Q8IY81 847 aaKnown RBP28.1■■■□□ 2.09
SDC3-202ENST00000339394 DZIP1LQ8IYY4 767 aaKnown RBP28.1■■■□□ 2.09
SDC3-202ENST00000339394 NEURL1BA8MQ27 555 aa28.09■■■□□ 2.09
SDC3-202ENST00000339394 RLBP1P12271 317 aa28.09■■■□□ 2.09
SDC3-202ENST00000339394 DDR1Q08345 913 aa28.09■■■□□ 2.09
SDC3-202ENST00000339394 SRCIN1Q9C0H9 1055 aa28.09■■■□□ 2.09
SDC3-202ENST00000339394 SRCAPQ6ZRS2 3230 aa28.09■■■□□ 2.09
SDC3-202ENST00000339394 ARFGEF2Q9Y6D5 1785 aa28.09■■■□□ 2.09
SDC3-202ENST00000339394 PARP10Q53GL7 1025 aa28.08■■■□□ 2.09
SDC3-202ENST00000339394 CCDC191Q8NCU4 936 aa28.08■■■□□ 2.09
SDC3-202ENST00000339394 POLRMTO00411 1230 aaKnown RBP28.07■■■□□ 2.08
SDC3-202ENST00000339394 CCT4P50991 539 aaKnown RBP28.07■■■□□ 2.08
SDC3-202ENST00000339394 SUSD4Q5VX71 490 aa28.07■■■□□ 2.08
SDC3-202ENST00000339394 RNF123Q5XPI4 1314 aa28.07■■■□□ 2.08
SDC3-202ENST00000339394 CARMIL3Q8ND23 1372 aa28.07■■■□□ 2.08
SDC3-202ENST00000339394 FAM177BA6PVY3 158 aa28.07■■■□□ 2.08
SDC3-202ENST00000339394 PANK1Q8TE04 598 aa28.07■■■□□ 2.08
SDC3-202ENST00000339394 CWC25Q9NXE8 425 aaPredicted RBP28.07■■■□□ 2.08
SDC3-202ENST00000339394 NUP98P52948 1817 aa28.06■■■□□ 2.08
SDC3-202ENST00000339394 MS4A1P11836 297 aa28.06■■■□□ 2.08
SDC3-202ENST00000339394 C20orf194Q5TEA3 1177 aa28.06■■■□□ 2.08
SDC3-202ENST00000339394 INTS3Q68E01 1043 aaKnown RBP28.06■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms