RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 CATIPQ7Z7H3 387 aa14.59□□□□□ -0.07
SDC3-201ENST00000336798 ZBTB9Q96C00 473 aa14.59□□□□□ -0.07
SDC3-201ENST00000336798 F8W031 263 aaPredicted RBP14.59□□□□□ -0.07
SDC3-201ENST00000336798 SPECC1Q5M775 1068 aa14.59□□□□□ -0.07
SDC3-201ENST00000336798 VTI1AQ96AJ9 217 aa14.59□□□□□ -0.07
SDC3-201ENST00000336798 ANO10Q9NW15 660 aa14.59□□□□□ -0.07
SDC3-201ENST00000336798 RGS22Q8NE09 1264 aa14.58□□□□□ -0.07
SDC3-201ENST00000336798 MYO1BO43795 1136 aa14.58□□□□□ -0.08
SDC3-201ENST00000336798 GTF2A1P52655 376 aaPredicted RBP14.58□□□□□ -0.08
SDC3-201ENST00000336798 FCHSD2O94868 740 aa14.58□□□□□ -0.08
SDC3-201ENST00000336798 LMAN1P49257 510 aa14.58□□□□□ -0.08
SDC3-201ENST00000336798 A0A087WZG4 1122 aa14.58□□□□□ -0.08
SDC3-201ENST00000336798 BAG4O95429 457 aaKnown RBP14.58□□□□□ -0.08
SDC3-201ENST00000336798 NME9Q86XW9 330 aa14.58□□□□□ -0.08
SDC3-201ENST00000336798 FSIP1Q8NA03 581 aa14.58□□□□□ -0.08
SDC3-201ENST00000336798 RAB34Q9BZG1 259 aa14.58□□□□□ -0.08
SDC3-201ENST00000336798 ZSCAN12O43309 604 aa14.57□□□□□ -0.08
SDC3-201ENST00000336798 ATAD2BQ9ULI0 1458 aa14.57□□□□□ -0.08
SDC3-201ENST00000336798 CCDC196A0A1B0GTZ2 297 aa14.57□□□□□ -0.08
SDC3-201ENST00000336798 TMC6Q7Z403 805 aa14.57□□□□□ -0.08
SDC3-201ENST00000336798 CFTRP13569 1480 aa14.57□□□□□ -0.08
SDC3-201ENST00000336798 LRRC9Q6ZRR7 1453 aa14.57□□□□□ -0.08
SDC3-201ENST00000336798 TSPY2A6NKD2 308 aa14.57□□□□□ -0.08
SDC3-201ENST00000336798 FOXO3O43524 673 aa14.57□□□□□ -0.08
SDC3-201ENST00000336798 ZSWIM4Q9H7M6 989 aa14.57□□□□□ -0.08
SDC3-201ENST00000336798 EHMT1Q9H9B1 1298 aa14.57□□□□□ -0.08
SDC3-201ENST00000336798 IGF1RP08069 1367 aa14.57□□□□□ -0.08
SDC3-201ENST00000336798 MICU3Q86XE3 530 aa14.56□□□□□ -0.08
SDC3-201ENST00000336798 HOMER2Q9NSB8 354 aa14.56□□□□□ -0.08
SDC3-201ENST00000336798 ARL1P40616 181 aaPredicted RBP14.56□□□□□ -0.08
SDC3-201ENST00000336798 HSP90AA4PQ58FG1 418 aa14.56□□□□□ -0.08
SDC3-201ENST00000336798 TMEM67Q5HYA8 995 aa14.56□□□□□ -0.08
SDC3-201ENST00000336798 SRRTQ9BXP5 876 aaKnown RBP14.56□□□□□ -0.08
SDC3-201ENST00000336798 GCOM1H8Y6P7 765 aaPredicted RBP14.56□□□□□ -0.08
SDC3-201ENST00000336798 MYZAPP0CAP1 466 aa14.56□□□□□ -0.08
SDC3-201ENST00000336798 SSFA2P28290 1259 aa14.56□□□□□ -0.08
SDC3-201ENST00000336798 GRIPAP1Q4V328 841 aa14.56□□□□□ -0.08
SDC3-201ENST00000336798 C16orf45Q96MC5 204 aaPredicted RBP14.56□□□□□ -0.08
SDC3-201ENST00000336798 CALCOCO1Q9P1Z2 691 aa14.56□□□□□ -0.08
SDC3-201ENST00000336798 PRG4Q92954 1404 aaPredicted RBP14.56□□□□□ -0.08
SDC3-201ENST00000336798 USO1O60763 962 aaKnown RBP14.56□□□□□ -0.08
SDC3-201ENST00000336798 KIF20AO95235 890 aa14.56□□□□□ -0.08
SDC3-201ENST00000336798 YEATS4O95619 227 aa14.56□□□□□ -0.08
SDC3-201ENST00000336798 CCDC183Q5T5S1 534 aa14.56□□□□□ -0.08
SDC3-201ENST00000336798 CALML4Q96GE6 196 aa14.56□□□□□ -0.08
SDC3-201ENST00000336798 KCNH5Q8NCM2 988 aa14.55□□□□□ -0.08
SDC3-201ENST00000336798 MAP3K2Q9Y2U5 619 aa14.55□□□□□ -0.08
SDC3-201ENST00000336798 PAFAH1B1P43034 410 aa14.55□□□□□ -0.08
SDC3-201ENST00000336798 KAT14Q9H8E8 782 aa14.55□□□□□ -0.08
SDC3-201ENST00000336798 USP25Q9UHP3 1055 aa14.55□□□□□ -0.08
SDC3-201ENST00000336798 DPH6Q7L8W6 267 aa14.55□□□□□ -0.08
SDC3-201ENST00000336798 SLC26A6Q9BXS9 759 aa14.55□□□□□ -0.08
SDC3-201ENST00000336798 IQSEC3Q9UPP2 1182 aaPredicted RBP14.55□□□□□ -0.08
SDC3-201ENST00000336798 FGFR1OPO95684 399 aaKnown RBP14.55□□□□□ -0.08
SDC3-201ENST00000336798 MAATS1Q7Z4T9 603 aa14.55□□□□□ -0.08
SDC3-201ENST00000336798 FAM107BQ9H098 131 aa14.55□□□□□ -0.08
SDC3-201ENST00000336798 ATP2C2O75185 946 aa14.55□□□□□ -0.08
SDC3-201ENST00000336798 MRPS9P82933 396 aaKnown RBP14.55□□□□□ -0.08
SDC3-201ENST00000336798 GJB2P29033 226 aa14.54□□□□□ -0.08
SDC3-201ENST00000336798 EMILIN1Q9Y6C2 1016 aa14.54□□□□□ -0.08
SDC3-201ENST00000336798 RNF216Q9NWF9 866 aaPredicted RBP14.54□□□□□ -0.08
SDC3-201ENST00000336798 PABPN1LA6NDY0 278 aaKnown RBP14.54□□□□□ -0.08
SDC3-201ENST00000336798 C20orf194Q5TEA3 1177 aa14.54□□□□□ -0.08
SDC3-201ENST00000336798 PHAXQ9H814 394 aaKnown RBP14.54□□□□□ -0.08
SDC3-201ENST00000336798 C9orf84Q5VXU9 1444 aa14.53□□□□□ -0.08
SDC3-201ENST00000336798 GBP3Q9H0R5 595 aa14.53□□□□□ -0.08
SDC3-201ENST00000336798 USP16Q9Y5T5 823 aa14.53□□□□□ -0.08
SDC3-201ENST00000336798 POGZQ7Z3K3 1410 aa14.53□□□□□ -0.08
SDC3-201ENST00000336798 GJC1P36383 396 aa14.53□□□□□ -0.08
SDC3-201ENST00000336798 MAP9Q49MG5 647 aa14.53□□□□□ -0.08
SDC3-201ENST00000336798 KIF18AQ8NI77 898 aa14.53□□□□□ -0.08
SDC3-201ENST00000336798 CABP5Q9NP86 173 aa14.53□□□□□ -0.08
SDC3-201ENST00000336798 DNAAF4Q8WXU2 420 aa14.53□□□□□ -0.08
SDC3-201ENST00000336798 SSH1Q8WYL5 1049 aa14.53□□□□□ -0.08
SDC3-201ENST00000336798 SYNCQ9H7C4 482 aa14.53□□□□□ -0.08
SDC3-201ENST00000336798 JADE2Q9NQC1 790 aa14.53□□□□□ -0.08
SDC3-201ENST00000336798 TCP11L1Q9NUJ3 509 aa14.53□□□□□ -0.08
SDC3-201ENST00000336798 PICALMQ13492 652 aa14.52□□□□□ -0.08
SDC3-201ENST00000336798 LDHAL6AQ6ZMR3 332 aa14.52□□□□□ -0.08
SDC3-201ENST00000336798 SYNJ2O15056 1496 aa14.52□□□□□ -0.08
SDC3-201ENST00000336798 VGLL3A8MV65 326 aa14.52□□□□□ -0.08
SDC3-201ENST00000336798 SLF2Q8IX21 1173 aa14.52□□□□□ -0.08
SDC3-201ENST00000336798 ACSBG1Q96GR2 724 aa14.52□□□□□ -0.08
SDC3-201ENST00000336798 CLEC11AQ9Y240 323 aa14.52□□□□□ -0.08
SDC3-201ENST00000336798 EXOC5O00471 708 aa14.52□□□□□ -0.09
SDC3-201ENST00000336798 DDX46Q7L014 1031 aaKnown RBP14.52□□□□□ -0.09
SDC3-201ENST00000336798 RNF41Q9H4P4 317 aaPredicted RBP14.52□□□□□ -0.09
SDC3-201ENST00000336798 RBM27Q9P2N5 1060 aaKnown RBP14.52□□□□□ -0.09
SDC3-201ENST00000336798 RFC4P35249 363 aa14.52□□□□□ -0.09
SDC3-201ENST00000336798 SLFN5Q08AF3 891 aa14.52□□□□□ -0.09
SDC3-201ENST00000336798 CETN1Q12798 172 aa14.52□□□□□ -0.09
SDC3-201ENST00000336798 PAIP2Q9BPZ3 127 aaKnown RBP14.52□□□□□ -0.09
SDC3-201ENST00000336798 ANXA1P04083 346 aa14.52□□□□□ -0.09
SDC3-201ENST00000336798 AKNAD1Q5T1N1 836 aa14.51□□□□□ -0.09
SDC3-201ENST00000336798 OTUD6BQ8N6M0 293 aa14.51□□□□□ -0.09
SDC3-201ENST00000336798 ALS2CR12Q96Q35 445 aa14.51□□□□□ -0.09
SDC3-201ENST00000336798 LRRC2Q9BYS8 371 aa14.51□□□□□ -0.09
SDC3-201ENST00000336798 SCAND2PQ9GZW5 306 aaPredicted RBP14.51□□□□□ -0.09
SDC3-201ENST00000336798 AFMP43652 599 aa14.51□□□□□ -0.09
SDC3-201ENST00000336798 APBB1IPQ7Z5R6 666 aaPredicted RBP14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 121.8 ms