RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 TMX3Q96JJ7 454 aa18.08■□□□□ 0.49
CLCNKA-201ENST00000331433 UTYO14607 1347 aa18.08■□□□□ 0.48
CLCNKA-201ENST00000331433 CYP2E1P05181 493 aaPredicted RBP18.08■□□□□ 0.48
CLCNKA-201ENST00000331433 LARP1Q6PKG0 1096 aaKnown RBP18.08■□□□□ 0.48
CLCNKA-201ENST00000331433 UPF3BQ9BZI7 483 aaKnown RBP18.08■□□□□ 0.48
CLCNKA-201ENST00000331433 CWC22Q9HCG8 908 aaKnown RBP18.08■□□□□ 0.48
CLCNKA-201ENST00000331433 HDAC5Q9UQL6 1122 aa18.08■□□□□ 0.48
CLCNKA-201ENST00000331433 USP42Q9H9J4 1324 aaKnown RBP18.07■□□□□ 0.48
CLCNKA-201ENST00000331433 CLEC17AQ6ZS10 378 aa18.07■□□□□ 0.48
CLCNKA-201ENST00000331433 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.07■□□□□ 0.48
CLCNKA-201ENST00000331433 TTC41PQ6P2S7 1318 aa18.07■□□□□ 0.48
CLCNKA-201ENST00000331433 NEURL1BA8MQ27 555 aa18.07■□□□□ 0.48
CLCNKA-201ENST00000331433 SGSM2O43147 1006 aa18.07■□□□□ 0.48
CLCNKA-201ENST00000331433 GLRX3O76003 335 aaKnown RBP18.07■□□□□ 0.48
CLCNKA-201ENST00000331433 SNRPA1P09661 255 aaKnown RBP18.07■□□□□ 0.48
CLCNKA-201ENST00000331433 MYD88Q99836 296 aa18.07■□□□□ 0.48
CLCNKA-201ENST00000331433 CPDO75976 1380 aa18.07■□□□□ 0.48
CLCNKA-201ENST00000331433 ABCC6O95255 1503 aa18.06■□□□□ 0.48
CLCNKA-201ENST00000331433 XRCC6P12956 609 aaKnown RBP eCLIP18.06■□□□□ 0.48
CLCNKA-201ENST00000331433 NEXNQ0ZGT2 675 aa18.06■□□□□ 0.48
CLCNKA-201ENST00000331433 CWC27Q6UX04 472 aaKnown RBP18.06■□□□□ 0.48
CLCNKA-201ENST00000331433 XIRP1Q702N8 1843 aaKnown RBP18.06■□□□□ 0.48
CLCNKA-201ENST00000331433 MRC1P22897 1456 aa18.06■□□□□ 0.48
CLCNKA-201ENST00000331433 IFIT2P09913 472 aaKnown RBP18.06■□□□□ 0.48
CLCNKA-201ENST00000331433 CABP4P57796 275 aa18.06■□□□□ 0.48
CLCNKA-201ENST00000331433 AACSQ86V21 672 aa18.06■□□□□ 0.48
CLCNKA-201ENST00000331433 ERC1Q8IUD2 1116 aa18.06■□□□□ 0.48
CLCNKA-201ENST00000331433 PKD1L3Q7Z443 1732 aa18.05■□□□□ 0.48
CLCNKA-201ENST00000331433 GOLGA6L22H0YM25 854 aa18.05■□□□□ 0.48
CLCNKA-201ENST00000331433 HSPA4P34932 840 aa18.05■□□□□ 0.48
CLCNKA-201ENST00000331433 LRP10Q7Z4F1 713 aa18.05■□□□□ 0.48
CLCNKA-201ENST00000331433 KLHDC4Q8TBB5 520 aa18.05■□□□□ 0.48
CLCNKA-201ENST00000331433 FMNL2Q96PY5 1086 aa18.05■□□□□ 0.48
CLCNKA-201ENST00000331433 SIL1Q9H173 461 aa18.05■□□□□ 0.48
CLCNKA-201ENST00000331433 ECHDC1Q9NTX5 307 aa18.05■□□□□ 0.48
CLCNKA-201ENST00000331433 SASH1O94885 1247 aa18.05■□□□□ 0.48
CLCNKA-201ENST00000331433 GCKRQ14397 625 aa18.05■□□□□ 0.48
CLCNKA-201ENST00000331433 JARID2Q92833 1246 aaPredicted RBP18.05■□□□□ 0.48
CLCNKA-201ENST00000331433 METTL22Q9BUU2 404 aaPredicted RBP18.05■□□□□ 0.48
CLCNKA-201ENST00000331433 RAD50Q92878 1312 aa18.04■□□□□ 0.48
CLCNKA-201ENST00000331433 SKOR2Q2VWA4 1001 aaPredicted RBP18.04■□□□□ 0.48
CLCNKA-201ENST00000331433 ANKRD13DQ6ZTN6 518 aa18.04■□□□□ 0.48
CLCNKA-201ENST00000331433 ZDHHC9Q9Y397 364 aa18.04■□□□□ 0.48
CLCNKA-201ENST00000331433 PTMSP20962 102 aa18.04■□□□□ 0.48
CLCNKA-201ENST00000331433 MCM2P49736 904 aa18.04■□□□□ 0.48
CLCNKA-201ENST00000331433 G3BP1Q13283 466 aaKnown RBP eCLIP18.04■□□□□ 0.48
CLCNKA-201ENST00000331433 EPHA10Q5JZY3 1008 aa18.04■□□□□ 0.48
CLCNKA-201ENST00000331433 MCTP1Q6DN14 999 aa18.04■□□□□ 0.48
CLCNKA-201ENST00000331433 PRDM11Q9NQV5 511 aa18.04■□□□□ 0.48
CLCNKA-201ENST00000331433 IL17RAQ96F46 866 aa18.03■□□□□ 0.48
CLCNKA-201ENST00000331433 PANK2Q9BZ23 570 aa18.03■□□□□ 0.48
CLCNKA-201ENST00000331433 LSG1Q9H089 658 aaKnown RBP18.03■□□□□ 0.48
CLCNKA-201ENST00000331433 EAF2Q96CJ1 260 aaPredicted RBP18.03■□□□□ 0.48
CLCNKA-201ENST00000331433 GPATCH3Q96I76 525 aa18.02■□□□□ 0.48
CLCNKA-201ENST00000331433 CCDC8Q9H0W5 538 aaPredicted RBP18.02■□□□□ 0.48
CLCNKA-201ENST00000331433 DIAPH3Q9NSV4 1193 aa18.02■□□□□ 0.48
CLCNKA-201ENST00000331433 EPB41L2O43491 1005 aaKnown RBP18.01■□□□□ 0.47
CLCNKA-201ENST00000331433 TOM1L2Q6ZVM7 507 aa18.01■□□□□ 0.47
CLCNKA-201ENST00000331433 TLR7Q9NYK1 1049 aaKnown RBP18.01■□□□□ 0.47
CLCNKA-201ENST00000331433 FOXD4L5Q5VV16 416 aaPredicted RBP18.01■□□□□ 0.47
CLCNKA-201ENST00000331433 FOXD4L4Q8WXT5 416 aaPredicted RBP18.01■□□□□ 0.47
CLCNKA-201ENST00000331433 CHAMP1Q96JM3 812 aa18.01■□□□□ 0.47
CLCNKA-201ENST00000331433 CUL4AQ13619 759 aa18■□□□□ 0.47
CLCNKA-201ENST00000331433 RASEFQ8IZ41 740 aa18■□□□□ 0.47
CLCNKA-201ENST00000331433 SNX14Q9Y5W7 946 aa18■□□□□ 0.47
CLCNKA-201ENST00000331433 DDX49Q9Y6V7 483 aaKnown RBP18■□□□□ 0.47
CLCNKA-201ENST00000331433 WDR17Q8IZU2 1322 aa18■□□□□ 0.47
CLCNKA-201ENST00000331433 PLEKHG2Q9H7P9 1386 aa18■□□□□ 0.47
CLCNKA-201ENST00000331433 ATP5J2-PTCD1G3V325 749 aa18■□□□□ 0.47
CLCNKA-201ENST00000331433 PTCD1O75127 700 aaKnown RBP18■□□□□ 0.47
CLCNKA-201ENST00000331433 KIAA1211Q6ZU35 1233 aa18■□□□□ 0.47
CLCNKA-201ENST00000331433 GAS2L3Q86XJ1 694 aa17.99■□□□□ 0.47
CLCNKA-201ENST00000331433 UBE3BQ7Z3V4 1068 aa17.99■□□□□ 0.47
CLCNKA-201ENST00000331433 GLI3P10071 1580 aa17.99■□□□□ 0.47
CLCNKA-201ENST00000331433 ZCRB1Q8TBF4 217 aaKnown RBP17.98■□□□□ 0.47
CLCNKA-201ENST00000331433 SLAIN2Q9P270 581 aa17.98■□□□□ 0.47
CLCNKA-201ENST00000331433 MRE11P49959 708 aa17.98■□□□□ 0.47
CLCNKA-201ENST00000331433 KLHL40Q2TBA0 621 aa17.98■□□□□ 0.47
CLCNKA-201ENST00000331433 GRPEL1Q9HAV7 217 aa17.98■□□□□ 0.47
CLCNKA-201ENST00000331433 LMBRD1Q9NUN5 540 aa17.98■□□□□ 0.47
CLCNKA-201ENST00000331433 PCDH11XQ9BZA7 1347 aa17.97■□□□□ 0.47
CLCNKA-201ENST00000331433 PCDH11YQ9BZA8 1340 aa17.97■□□□□ 0.47
CLCNKA-201ENST00000331433 ZNF335Q9H4Z2 1342 aaPredicted RBP17.97■□□□□ 0.47
CLCNKA-201ENST00000331433 PTH1RQ03431 593 aa17.97■□□□□ 0.47
CLCNKA-201ENST00000331433 EVI5LQ96CN4 794 aa17.97■□□□□ 0.47
CLCNKA-201ENST00000331433 AFDNP55196 1824 aaKnown RBP17.97■□□□□ 0.47
CLCNKA-201ENST00000331433 SOS2Q07890 1332 aaPredicted RBP17.97■□□□□ 0.47
CLCNKA-201ENST00000331433 NBPF26B4DH59 902 aa17.96■□□□□ 0.47
CLCNKA-201ENST00000331433 NBPF14Q5TI25 921 aa17.96■□□□□ 0.47
CLCNKA-201ENST00000331433 NBPF10Q6P3W6 841 aaKnown RBP17.96■□□□□ 0.47
CLCNKA-201ENST00000331433 NBPF15Q8N660 670 aa17.96■□□□□ 0.47
CLCNKA-201ENST00000331433 RUFY2Q8WXA3 655 aa17.96■□□□□ 0.47
CLCNKA-201ENST00000331433 INTS4Q96HW7 963 aaKnown RBP17.96■□□□□ 0.47
CLCNKA-201ENST00000331433 BOLA2Q9H3K6 86 aa17.96■□□□□ 0.47
CLCNKA-201ENST00000331433 ARFGEF2Q9Y6D5 1785 aa17.96■□□□□ 0.47
CLCNKA-201ENST00000331433 PARP4Q9UKK3 1724 aaKnown RBP17.96■□□□□ 0.47
CLCNKA-201ENST00000331433 COL5A2P05997 1499 aaPredicted RBP17.96■□□□□ 0.47
CLCNKA-201ENST00000331433 A0A087WZG4 1122 aa17.95■□□□□ 0.46
CLCNKA-201ENST00000331433 LARP6Q9BRS8 491 aaKnown RBP17.95■□□□□ 0.46
CLCNKA-201ENST00000331433 STRN4Q9NRL3 753 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 135.7 ms