RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 CCDC181Q5TID7 509 aa11.87□□□□□ -0.51
CHD3-201ENST00000330494 PAXIP1Q6ZW49 1069 aaPredicted RBP11.87□□□□□ -0.51
CHD3-201ENST00000330494 ASXL1Q8IXJ9 1541 aa11.87□□□□□ -0.51
CHD3-201ENST00000330494 RIMS2Q9UQ26 1411 aa11.87□□□□□ -0.51
CHD3-201ENST00000330494 LIG1P18858 919 aa11.87□□□□□ -0.51
CHD3-201ENST00000330494 DHX37Q8IY37 1157 aaKnown RBP11.87□□□□□ -0.51
CHD3-201ENST00000330494 EIF5P55010 431 aaKnown RBP11.87□□□□□ -0.51
CHD3-201ENST00000330494 FAM193AP78312 1265 aa11.87□□□□□ -0.51
CHD3-201ENST00000330494 TCEANC2Q96MN5 208 aa11.87□□□□□ -0.51
CHD3-201ENST00000330494 TBC1D2Q9BYX2 928 aa11.87□□□□□ -0.51
CHD3-201ENST00000330494 PIK3R4Q99570 1358 aa11.87□□□□□ -0.51
CHD3-201ENST00000330494 NLRP5P59047 1200 aa11.87□□□□□ -0.51
CHD3-201ENST00000330494 CADPS2Q86UW7 1296 aa11.87□□□□□ -0.51
CHD3-201ENST00000330494 IQCA1Q86XH1 822 aa11.87□□□□□ -0.51
CHD3-201ENST00000330494 PA2G4Q9UQ80 394 aaKnown RBP11.87□□□□□ -0.51
CHD3-201ENST00000330494 UBAP1LF5GYI3 381 aa11.87□□□□□ -0.51
CHD3-201ENST00000330494 SSR1P43307 286 aaKnown RBP11.87□□□□□ -0.51
CHD3-201ENST00000330494 MICU3Q86XE3 530 aa11.87□□□□□ -0.51
CHD3-201ENST00000330494 EVI5LQ96CN4 794 aa11.87□□□□□ -0.51
CHD3-201ENST00000330494 GJB2P29033 226 aa11.86□□□□□ -0.51
CHD3-201ENST00000330494 CENPHQ9H3R5 247 aa11.86□□□□□ -0.51
CHD3-201ENST00000330494 NUP153P49790 1475 aaKnown RBP11.86□□□□□ -0.51
CHD3-201ENST00000330494 AXDND1Q5T1B0 1012 aaPredicted RBP11.86□□□□□ -0.51
CHD3-201ENST00000330494 NFATC2IPQ8NCF5 419 aa11.86□□□□□ -0.51
CHD3-201ENST00000330494 CTCFLQ8NI51 663 aaPredicted RBP11.86□□□□□ -0.51
CHD3-201ENST00000330494 ECHDC1Q9NTX5 307 aa11.86□□□□□ -0.51
CHD3-201ENST00000330494 TMEM67Q5HYA8 995 aa11.86□□□□□ -0.51
CHD3-201ENST00000330494 NBPF6Q5VWK0 638 aa11.86□□□□□ -0.51
CHD3-201ENST00000330494 NBPF5PQ86XG9 351 aaPredicted RBP11.86□□□□□ -0.51
CHD3-201ENST00000330494 NBPF4Q96M43 638 aa11.86□□□□□ -0.51
CHD3-201ENST00000330494 CEP131Q9UPN4 1083 aa11.86□□□□□ -0.51
CHD3-201ENST00000330494 BIN1O00499 593 aa11.86□□□□□ -0.51
CHD3-201ENST00000330494 NECAB1Q8N987 351 aa11.86□□□□□ -0.51
CHD3-201ENST00000330494 ANKRD36BQ8N2N9 1353 aa11.86□□□□□ -0.51
CHD3-201ENST00000330494 PLCH2O75038 1416 aa11.85□□□□□ -0.51
CHD3-201ENST00000330494 ECM2O94769 699 aaPredicted RBP11.85□□□□□ -0.51
CHD3-201ENST00000330494 ZNF287Q9HBT7 754 aa11.85□□□□□ -0.51
CHD3-201ENST00000330494 JAG2Q9Y219 1238 aa11.85□□□□□ -0.51
CHD3-201ENST00000330494 MTHFSDQ2M296 383 aaKnown RBP11.85□□□□□ -0.51
CHD3-201ENST00000330494 KIAA1328Q86T90 577 aa11.85□□□□□ -0.51
CHD3-201ENST00000330494 PRDM10Q9NQV6 1147 aa11.85□□□□□ -0.51
CHD3-201ENST00000330494 RBM27Q9P2N5 1060 aaKnown RBP11.85□□□□□ -0.51
CHD3-201ENST00000330494 MAPKBP1O60336 1514 aa11.85□□□□□ -0.51
CHD3-201ENST00000330494 UHRF1BP1LA0JNW5 1464 aa11.85□□□□□ -0.51
CHD3-201ENST00000330494 NEFHP12036 1026 aa11.84□□□□□ -0.51
CHD3-201ENST00000330494 CDC5LQ99459 802 aaKnown RBP11.84□□□□□ -0.51
CHD3-201ENST00000330494 LIMCH1Q9UPQ0 1083 aa11.84□□□□□ -0.51
CHD3-201ENST00000330494 CBFA2T2O43439 604 aa11.84□□□□□ -0.51
CHD3-201ENST00000330494 CDR1P51861 262 aa11.84□□□□□ -0.51
CHD3-201ENST00000330494 PCDHB15Q9Y5E8 787 aa11.84□□□□□ -0.51
CHD3-201ENST00000330494 TSPY2A6NKD2 308 aa11.84□□□□□ -0.51
CHD3-201ENST00000330494 CATIPQ7Z7H3 387 aa11.84□□□□□ -0.51
CHD3-201ENST00000330494 TTC22Q5TAA0 569 aa11.84□□□□□ -0.51
CHD3-201ENST00000330494 TSPYL6Q8N831 410 aa11.84□□□□□ -0.51
CHD3-201ENST00000330494 NSD2O96028 1365 aa11.84□□□□□ -0.51
CHD3-201ENST00000330494 CCP110O43303 1012 aa11.84□□□□□ -0.51
CHD3-201ENST00000330494 DNA2P51530 1060 aa11.84□□□□□ -0.51
CHD3-201ENST00000330494 USP16Q9Y5T5 823 aa11.84□□□□□ -0.51
CHD3-201ENST00000330494 UQCRHLA0A096LP55 91 aa11.84□□□□□ -0.51
CHD3-201ENST00000330494 UQCRHP07919 91 aa11.84□□□□□ -0.51
CHD3-201ENST00000330494 SCLT1Q96NL6 688 aa11.84□□□□□ -0.51
CHD3-201ENST00000330494 CCDC191Q8NCU4 936 aa11.83□□□□□ -0.51
CHD3-201ENST00000330494 TNPO1Q92973 898 aaKnown RBP11.83□□□□□ -0.51
CHD3-201ENST00000330494 SLC26A6Q9BXS9 759 aa11.83□□□□□ -0.51
CHD3-201ENST00000330494 ABCC1P33527 1531 aa11.83□□□□□ -0.52
CHD3-201ENST00000330494 CPLX3Q8WVH0 158 aa11.83□□□□□ -0.52
CHD3-201ENST00000330494 PEG3Q9GZU2 1588 aa11.83□□□□□ -0.52
CHD3-201ENST00000330494 LEKR1Q6ZMV7 388 aa11.83□□□□□ -0.52
CHD3-201ENST00000330494 HELBQ8NG08 1087 aaPredicted RBP11.83□□□□□ -0.52
CHD3-201ENST00000330494 SDSP20132 328 aa11.83□□□□□ -0.52
CHD3-201ENST00000330494 CWF19L2Q2TBE0 894 aaKnown RBP11.83□□□□□ -0.52
CHD3-201ENST00000330494 POLKQ9UBT6 870 aa11.83□□□□□ -0.52
CHD3-201ENST00000330494 WDR7Q9Y4E6 1490 aa11.83□□□□□ -0.52
CHD3-201ENST00000330494 ERICH4A6NGS2 130 aa11.83□□□□□ -0.52
CHD3-201ENST00000330494 KIAA0556O60303 1618 aa11.82□□□□□ -0.52
CHD3-201ENST00000330494 RHPN1Q8TCX5 695 aa11.82□□□□□ -0.52
CHD3-201ENST00000330494 CIZ1Q9ULV3 898 aaPredicted RBP11.82□□□□□ -0.52
CHD3-201ENST00000330494 MYO6Q9UM54 1294 aa11.82□□□□□ -0.52
CHD3-201ENST00000330494 CHST3Q7LGC8 479 aa11.82□□□□□ -0.52
CHD3-201ENST00000330494 DDX17Q92841 729 aaKnown RBP11.82□□□□□ -0.52
CHD3-201ENST00000330494 FEZ1Q99689 392 aa11.82□□□□□ -0.52
CHD3-201ENST00000330494 SMTNL1A8MU46 457 aa11.82□□□□□ -0.52
CHD3-201ENST00000330494 NIP7Q9Y221 180 aaKnown RBP eCLIP11.82□□□□□ -0.52
CHD3-201ENST00000330494 MFSD6Q6ZSS7 791 aa11.82□□□□□ -0.52
CHD3-201ENST00000330494 FSIP1Q8NA03 581 aa11.82□□□□□ -0.52
CHD3-201ENST00000330494 SETDB2Q96T68 719 aa11.82□□□□□ -0.52
CHD3-201ENST00000330494 PRAG1Q86YV5 1406 aa11.82□□□□□ -0.52
CHD3-201ENST00000330494 ST5P78524 1137 aa11.82□□□□□ -0.52
CHD3-201ENST00000330494 PICALMQ13492 652 aa11.82□□□□□ -0.52
CHD3-201ENST00000330494 LMBR1LQ6UX01 489 aa11.82□□□□□ -0.52
CHD3-201ENST00000330494 UBE2Q2Q8WVN8 375 aa11.82□□□□□ -0.52
CHD3-201ENST00000330494 NEK1Q96PY6 1258 aa11.82□□□□□ -0.52
CHD3-201ENST00000330494 ANKRD62A6NC57 917 aa11.82□□□□□ -0.52
CHD3-201ENST00000330494 EPB41L2O43491 1005 aaKnown RBP11.82□□□□□ -0.52
CHD3-201ENST00000330494 CCDC196A0A1B0GTZ2 297 aa11.81□□□□□ -0.52
CHD3-201ENST00000330494 CCDC112Q8NEF3 446 aa11.81□□□□□ -0.52
CHD3-201ENST00000330494 SIRT1Q96EB6 747 aa11.81□□□□□ -0.52
CHD3-201ENST00000330494 CCDC152Q4G0S7 254 aa11.81□□□□□ -0.52
CHD3-201ENST00000330494 MRPL50Q8N5N7 158 aaKnown RBP11.81□□□□□ -0.52
CHD3-201ENST00000330494 CNNM3Q8NE01 707 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms