RNA–Protein interactions for RNA: ENST00000315962.8

TRIM55-202, Transcript of tripartite motif containing 55, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM55, Length 2,914 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-202ENST00000315962 CPDO75976 1380 aa9.32□□□□□ -0.92
TRIM55-202ENST00000315962 GRM8O00222 908 aa9.32□□□□□ -0.92
TRIM55-202ENST00000315962 HOXB7P09629 217 aa9.32□□□□□ -0.92
TRIM55-202ENST00000315962 TNPO1Q92973 898 aaKnown RBP9.32□□□□□ -0.92
TRIM55-202ENST00000315962 ARID3AQ99856 593 aa9.32□□□□□ -0.92
TRIM55-202ENST00000315962 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.32□□□□□ -0.92
TRIM55-202ENST00000315962 TMOD3Q9NYL9 352 aa9.32□□□□□ -0.92
TRIM55-202ENST00000315962 COL5A2P05997 1499 aaPredicted RBP9.32□□□□□ -0.92
TRIM55-202ENST00000315962 DTNBO60941 627 aa9.32□□□□□ -0.92
TRIM55-202ENST00000315962 CDC45O75419 566 aa9.32□□□□□ -0.92
TRIM55-202ENST00000315962 DDX58O95786 925 aaKnown RBP9.32□□□□□ -0.92
TRIM55-202ENST00000315962 NOL8Q76FK4 1167 aaKnown RBP9.32□□□□□ -0.92
TRIM55-202ENST00000315962 RHPN1Q8TCX5 695 aa9.32□□□□□ -0.92
TRIM55-202ENST00000315962 GRPEL1Q9HAV7 217 aa9.32□□□□□ -0.92
TRIM55-202ENST00000315962 A0A087WZG4 1122 aa9.31□□□□□ -0.92
TRIM55-202ENST00000315962 PRIM1P49642 420 aaKnown RBP9.31□□□□□ -0.92
TRIM55-202ENST00000315962 NEXNQ0ZGT2 675 aa9.31□□□□□ -0.92
TRIM55-202ENST00000315962 SMIM5Q71RC9 77 aa9.31□□□□□ -0.92
TRIM55-202ENST00000315962 SYNE4Q8N205 404 aa9.31□□□□□ -0.92
TRIM55-202ENST00000315962 CCDC8Q9H0W5 538 aaPredicted RBP9.31□□□□□ -0.92
TRIM55-202ENST00000315962 IL25Q9H293 177 aa9.31□□□□□ -0.92
TRIM55-202ENST00000315962 XIRP1Q702N8 1843 aaKnown RBP9.31□□□□□ -0.92
TRIM55-202ENST00000315962 KIF1AQ12756 1690 aa9.31□□□□□ -0.92
TRIM55-202ENST00000315962 FSD2A1L4K1 749 aa9.31□□□□□ -0.92
TRIM55-202ENST00000315962 FAM177BA6PVY3 158 aa9.31□□□□□ -0.92
TRIM55-202ENST00000315962 NEURL1BA8MQ27 555 aa9.31□□□□□ -0.92
TRIM55-202ENST00000315962 DNAJC10Q8IXB1 793 aa9.31□□□□□ -0.92
TRIM55-202ENST00000315962 LINS1Q8NG48 757 aa9.31□□□□□ -0.92
TRIM55-202ENST00000315962 SSH3Q8TE77 659 aa9.31□□□□□ -0.92
TRIM55-202ENST00000315962 SSFA2P28290 1259 aa9.3□□□□□ -0.92
TRIM55-202ENST00000315962 GCKRQ14397 625 aa9.3□□□□□ -0.92
TRIM55-202ENST00000315962 TPRNQ4KMQ1 711 aa9.3□□□□□ -0.92
TRIM55-202ENST00000315962 FOXD4L5Q5VV16 416 aaPredicted RBP9.3□□□□□ -0.92
TRIM55-202ENST00000315962 FOXD4L4Q8WXT5 416 aaPredicted RBP9.3□□□□□ -0.92
TRIM55-202ENST00000315962 HEG1Q9ULI3 1381 aa9.3□□□□□ -0.92
TRIM55-202ENST00000315962 NCLP19338 710 aaKnown RBP9.3□□□□□ -0.92
TRIM55-202ENST00000315962 C8orf37Q96NL8 207 aa9.3□□□□□ -0.92
TRIM55-202ENST00000315962 KIF2CQ99661 725 aa9.3□□□□□ -0.92
TRIM55-202ENST00000315962 TLR7Q9NYK1 1049 aaKnown RBP9.3□□□□□ -0.92
TRIM55-202ENST00000315962 NCAPD2Q15021 1401 aa9.29□□□□□ -0.92
TRIM55-202ENST00000315962 UBAP1LF5GYI3 381 aa9.29□□□□□ -0.92
TRIM55-202ENST00000315962 GPTP24298 496 aa9.29□□□□□ -0.92
TRIM55-202ENST00000315962 LRP10Q7Z4F1 713 aa9.29□□□□□ -0.92
TRIM55-202ENST00000315962 VSIG10Q8N0Z9 540 aa9.29□□□□□ -0.92
TRIM55-202ENST00000315962 IBTKQ9P2D0 1353 aaPredicted RBP9.29□□□□□ -0.92
TRIM55-202ENST00000315962 EXOC5O00471 708 aa9.29□□□□□ -0.92
TRIM55-202ENST00000315962 ANO2Q9NQ90 1003 aa9.29□□□□□ -0.92
TRIM55-202ENST00000315962 OVOS2A0A0G2JMS6 1433 aa9.29□□□□□ -0.92
TRIM55-202ENST00000315962 LRRC37A3O60309 1634 aa9.29□□□□□ -0.92
TRIM55-202ENST00000315962 CHGBP05060 677 aa9.28□□□□□ -0.92
TRIM55-202ENST00000315962 AACSQ86V21 672 aa9.28□□□□□ -0.92
TRIM55-202ENST00000315962 EDC3Q96F86 508 aaKnown RBP9.28□□□□□ -0.92
TRIM55-202ENST00000315962 LARP6Q9BRS8 491 aaKnown RBP9.28□□□□□ -0.92
TRIM55-202ENST00000315962 METTL22Q9BUU2 404 aaPredicted RBP9.28□□□□□ -0.92
TRIM55-202ENST00000315962 CWC27Q6UX04 472 aaKnown RBP9.28□□□□□ -0.92
TRIM55-202ENST00000315962 ZNF594Q96JF6 807 aaPredicted RBP9.28□□□□□ -0.92
TRIM55-202ENST00000315962 ATG3Q9NT62 314 aa9.28□□□□□ -0.92
TRIM55-202ENST00000315962 TBC1D2BQ9UPU7 963 aa9.28□□□□□ -0.92
TRIM55-202ENST00000315962 USP54Q70EL1 1684 aa9.28□□□□□ -0.92
TRIM55-202ENST00000315962 KCNQ2O43526 872 aa9.28□□□□□ -0.92
TRIM55-202ENST00000315962 POLA2Q14181 598 aa9.28□□□□□ -0.92
TRIM55-202ENST00000315962 TRIM44Q96DX7 344 aaPredicted RBP9.28□□□□□ -0.92
TRIM55-202ENST00000315962 FAM89AQ96GI7 184 aa9.28□□□□□ -0.92
TRIM55-202ENST00000315962 SASH1O94885 1247 aa9.27□□□□□ -0.93
TRIM55-202ENST00000315962 KCNA4P22459 653 aa9.27□□□□□ -0.93
TRIM55-202ENST00000315962 PKP1Q13835 747 aa9.27□□□□□ -0.93
TRIM55-202ENST00000315962 FAM98CQ17RN3 349 aaKnown RBP9.27□□□□□ -0.93
TRIM55-202ENST00000315962 LMBR1LQ6UX01 489 aa9.27□□□□□ -0.93
TRIM55-202ENST00000315962 PTF1AQ7RTS3 328 aa9.27□□□□□ -0.93
TRIM55-202ENST00000315962 SLC4A9Q96Q91 983 aa9.27□□□□□ -0.93
TRIM55-202ENST00000315962 PHRF1Q9P1Y6 1649 aaKnown RBP9.27□□□□□ -0.93
TRIM55-202ENST00000315962 ESPNB1AK53 854 aa9.27□□□□□ -0.93
TRIM55-202ENST00000315962 ERVV-2B6SEH9 535 aa9.27□□□□□ -0.93
TRIM55-202ENST00000315962 IFIT2P09913 472 aaKnown RBP9.27□□□□□ -0.93
TRIM55-202ENST00000315962 MRE11P49959 708 aa9.27□□□□□ -0.93
TRIM55-202ENST00000315962 EAF2Q96CJ1 260 aaPredicted RBP9.27□□□□□ -0.93
TRIM55-202ENST00000315962 KIF1BPQ96EK5 621 aa9.27□□□□□ -0.93
TRIM55-202ENST00000315962 USP26Q9BXU7 913 aa9.27□□□□□ -0.93
TRIM55-202ENST00000315962 BOLA2Q9H3K6 86 aa9.27□□□□□ -0.93
TRIM55-202ENST00000315962 G3BP1Q13283 466 aaKnown RBP eCLIP9.26□□□□□ -0.93
TRIM55-202ENST00000315962 CLASRPQ8N2M8 674 aaKnown RBP9.26□□□□□ -0.93
TRIM55-202ENST00000315962 NGLY1Q96IV0 654 aa9.26□□□□□ -0.93
TRIM55-202ENST00000315962 COL18A1P39060 1754 aa9.26□□□□□ -0.93
TRIM55-202ENST00000315962 ALDH1L1O75891 902 aa9.26□□□□□ -0.93
TRIM55-202ENST00000315962 FOXD4L6Q3SYB3 417 aaPredicted RBP9.26□□□□□ -0.93
TRIM55-202ENST00000315962 CASC1Q6TDU7 716 aa9.26□□□□□ -0.93
TRIM55-202ENST00000315962 FOXD4L3Q6VB84 417 aaPredicted RBP9.26□□□□□ -0.93
TRIM55-202ENST00000315962 CHMP4AQ9BY43 222 aa9.26□□□□□ -0.93
TRIM55-202ENST00000315962 UPF3BQ9BZI7 483 aaKnown RBP9.26□□□□□ -0.93
TRIM55-202ENST00000315962 PALD1Q9ULE6 856 aa9.26□□□□□ -0.93
TRIM55-202ENST00000315962 RBM25P49756 843 aaKnown RBP9.25□□□□□ -0.93
TRIM55-202ENST00000315962 HLFQ16534 295 aa9.25□□□□□ -0.93
TRIM55-202ENST00000315962 SLFNL1Q499Z3 407 aa9.25□□□□□ -0.93
TRIM55-202ENST00000315962 FAM208AQ9UK61 1670 aaKnown RBP9.25□□□□□ -0.93
TRIM55-202ENST00000315962 DDX11L8A8MPP1 907 aa9.25□□□□□ -0.93
TRIM55-202ENST00000315962 CLCN1P35523 988 aa9.25□□□□□ -0.93
TRIM55-202ENST00000315962 HSP90AA2PQ14568 343 aaPredicted RBP9.25□□□□□ -0.93
TRIM55-202ENST00000315962 DDB1Q16531 1140 aa9.25□□□□□ -0.93
TRIM55-202ENST00000315962 PLBD2Q8NHP8 589 aa9.25□□□□□ -0.93
TRIM55-202ENST00000315962 PI4K2BQ8TCG2 481 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms