RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 RNF40O75150 1001 aa8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 TRIM68Q6AZZ1 485 aa8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 ANKRD35Q8N283 1001 aa8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 CLUAP1Q96AJ1 413 aa8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 APOEP02649 317 aa8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 DNAJC3Q13217 504 aa8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 ACBD5Q5T8D3 534 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 TCERG1LQ5VWI1 586 aa8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 TRIM17Q9Y577 477 aa8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 CNGB3Q9NQW8 809 aa8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 POLE3Q9NRF9 147 aa8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 LSM1O15116 133 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 CETN3O15182 167 aa8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 INAQ16352 499 aa8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 GKAP1Q5VSY0 366 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 CCDC83Q8IWF9 413 aa8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 HSF2BPO75031 334 aa8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 GBP1P32455 592 aa8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 PRPF4BQ13523 1007 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 RAB3IPQ96QF0 476 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 RASSF4Q9H2L5 321 aa8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-201ENST00000313860 KINO60870 393 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 KCNA4P22459 653 aa8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 TRDNQ13061 729 aa8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 SF3B3Q15393 1217 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 CFAP157Q5JU67 520 aa8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 ZBBXA8MT70 800 aa8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 TRIM37O94972 964 aa8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 EIF2AQ9BY44 585 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 DIAPH2O60879 1101 aa8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 IGSF3O75054 1194 aa8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 OMA1Q96E52 524 aa8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 NBPF3Q9H094 633 aa8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 AMOTL2Q9Y2J4 779 aa8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 TMEM232C9JQI7 657 aa8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 ARHGEF9O43307 516 aa8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 CCDC38Q502W7 563 aa8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 ANGPT1Q15389 498 aa8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 WDR75Q8IWA0 830 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 NEK1Q96PY6 1258 aa8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 DIABLOQ9NR28 239 aa8.74□□□□□ -1.01
LIMCH1-201ENST00000313860 ESRRBO95718 433 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 IVLP07476 585 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 POTEJP0CG39 1038 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 UBE3AQ05086 875 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 CLIP2Q9UDT6 1046 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 HGSO14964 777 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 KRT7P08729 469 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 EIF5P55010 431 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 MICAL1Q8TDZ2 1067 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 HVCN1Q96D96 273 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 CAPZA3Q96KX2 299 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 RRP7BPQ9NSQ0 103 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 MCM3P25205 808 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 SLC8A1P32418 973 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 CHMP4BP1P59074 171 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 ANGPTL3Q9Y5C1 460 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 BAZ1BQ9UIG0 1483 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 MAN1A2O60476 641 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 PIP4K2AP48426 406 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 UNC45BQ8IWX7 931 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 TTC1Q99614 292 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 E9PMD0 336 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 RLBP1P12271 317 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 GRK2P25098 689 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 CUL4BQ13620 913 aa8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 SPOUT1Q5T280 376 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-201ENST00000313860 CEP104O60308 925 aa8.72□□□□□ -1.01
LIMCH1-201ENST00000313860 HP1BP3Q5SSJ5 553 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-201ENST00000313860 NBPF10Q6P3W6 841 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-201ENST00000313860 ST13P5Q8NFI4 369 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-201ENST00000313860 SH3GL2Q99962 352 aa8.72□□□□□ -1.01
LIMCH1-201ENST00000313860 CRCPO75575 148 aa8.72□□□□□ -1.01
LIMCH1-201ENST00000313860 UAP1Q16222 522 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-201ENST00000313860 CEP57L1Q8IYX8 460 aa8.72□□□□□ -1.01
LIMCH1-201ENST00000313860 ZKSCAN1P17029 563 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-201ENST00000313860 CCDC65Q8IXS2 484 aa8.72□□□□□ -1.01
LIMCH1-201ENST00000313860 ERMNQ8TAM6 284 aa8.72□□□□□ -1.01
LIMCH1-201ENST00000313860 TMOD2Q9NZR1 351 aa8.72□□□□□ -1.01
LIMCH1-201ENST00000313860 RANBP1P43487 201 aa8.72□□□□□ -1.01
LIMCH1-201ENST00000313860 FNBP4Q8N3X1 1017 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-201ENST00000313860 TMC2Q8TDI7 906 aa8.72□□□□□ -1.01
LIMCH1-201ENST00000313860 MRPS26Q9BYN8 205 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-201ENST00000313860 ST13P50502 369 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-201ENST00000313860 ANKRD45Q5TZF3 282 aa8.72□□□□□ -1.01
LIMCH1-201ENST00000313860 DUSP27Q5VZP5 1158 aa8.72□□□□□ -1.01
LIMCH1-201ENST00000313860 JAKMIP2Q96AA8 810 aa8.72□□□□□ -1.01
LIMCH1-201ENST00000313860 DNAJC8O75937 253 aaPredicted RBP8.71□□□□□ -1.01
LIMCH1-201ENST00000313860 CTAGE8P0CG41 777 aa8.71□□□□□ -1.01
LIMCH1-201ENST00000313860 IL1RL1Q01638 556 aa8.71□□□□□ -1.01
LIMCH1-201ENST00000313860 SPA17Q15506 151 aa8.71□□□□□ -1.01
LIMCH1-201ENST00000313860 ARHGAP44Q17R89 818 aa8.71□□□□□ -1.01
LIMCH1-201ENST00000313860 GEN1Q17RS7 908 aa8.71□□□□□ -1.01
LIMCH1-201ENST00000313860 TSNAXIP1Q2TAA8 658 aa8.71□□□□□ -1.01
LIMCH1-201ENST00000313860 CTAGE4Q8IX94 777 aa8.71□□□□□ -1.01
LIMCH1-201ENST00000313860 TMEM87AQ8NBN3 555 aa8.71□□□□□ -1.01
LIMCH1-201ENST00000313860 SIN3AQ96ST3 1273 aa8.71□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms