RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 ZNF496Q96IT1 587 aaPredicted RBP13.14□□□□□ -0.31
LSM3-201ENST00000306024 SHPRHQ149N8 1683 aa13.14□□□□□ -0.31
LSM3-201ENST00000306024 ZNF500O60304 480 aaPredicted RBP13.14□□□□□ -0.31
LSM3-201ENST00000306024 RLBP1P12271 317 aa13.14□□□□□ -0.31
LSM3-201ENST00000306024 PIP4K2AP48426 406 aaPredicted RBP13.14□□□□□ -0.31
LSM3-201ENST00000306024 ANKRD45Q5TZF3 282 aa13.14□□□□□ -0.31
LSM3-201ENST00000306024 STARD3NLO95772 234 aa13.13□□□□□ -0.31
LSM3-201ENST00000306024 RBM27Q9P2N5 1060 aaKnown RBP13.13□□□□□ -0.31
LSM3-201ENST00000306024 SMC5Q8IY18 1101 aa13.13□□□□□ -0.31
LSM3-201ENST00000306024 HMMRO75330 724 aa13.13□□□□□ -0.31
LSM3-201ENST00000306024 RBSNQ9H1K0 784 aa13.13□□□□□ -0.31
LSM3-201ENST00000306024 DIAPH3Q9NSV4 1193 aa13.13□□□□□ -0.31
LSM3-201ENST00000306024 SPATA31A6Q5VVP1 1343 aa13.13□□□□□ -0.31
LSM3-201ENST00000306024 ERVV-2B6SEH9 535 aa13.12□□□□□ -0.31
LSM3-201ENST00000306024 CCT4P50991 539 aaKnown RBP13.12□□□□□ -0.31
LSM3-201ENST00000306024 HDAC5Q9UQL6 1122 aa13.12□□□□□ -0.31
LSM3-201ENST00000306024 AFF2P51816 1311 aa13.12□□□□□ -0.31
LSM3-201ENST00000306024 SLIT3O75094 1523 aa13.12□□□□□ -0.31
LSM3-201ENST00000306024 SRCIN1Q9C0H9 1055 aa13.12□□□□□ -0.31
LSM3-201ENST00000306024 CHMP3Q9Y3E7 222 aa13.12□□□□□ -0.31
LSM3-201ENST00000306024 G2E3Q7L622 706 aa13.12□□□□□ -0.31
LSM3-201ENST00000306024 QTRT2Q9H974 415 aaKnown RBP13.12□□□□□ -0.31
LSM3-201ENST00000306024 PTPRCP08575 1304 aa13.12□□□□□ -0.31
LSM3-201ENST00000306024 CASC1Q6TDU7 716 aa13.11□□□□□ -0.31
LSM3-201ENST00000306024 HYPKQ9NX55 129 aa13.11□□□□□ -0.31
LSM3-201ENST00000306024 TRPC5Q9UL62 973 aaPredicted RBP13.11□□□□□ -0.31
LSM3-201ENST00000306024 PEAK1Q9H792 1746 aa13.11□□□□□ -0.31
LSM3-201ENST00000306024 UBTFL1P0CB47 393 aaPredicted RBP13.11□□□□□ -0.31
LSM3-201ENST00000306024 MED1Q15648 1581 aaPredicted RBP13.11□□□□□ -0.31
LSM3-201ENST00000306024 ROBO1Q9Y6N7 1651 aa13.11□□□□□ -0.31
LSM3-201ENST00000306024 CCDC66A2RUB6 948 aa13.11□□□□□ -0.31
LSM3-201ENST00000306024 PI4KAP2A4QPH2 592 aa13.11□□□□□ -0.31
LSM3-201ENST00000306024 PI4KAP1Q8N8J0 262 aa13.11□□□□□ -0.31
LSM3-201ENST00000306024 ARHGAP45Q92619 1136 aa13.11□□□□□ -0.31
LSM3-201ENST00000306024 ST18O60284 1047 aa13.1□□□□□ -0.31
LSM3-201ENST00000306024 PHF14O94880 888 aa13.1□□□□□ -0.31
LSM3-201ENST00000306024 PHAXQ9H814 394 aaKnown RBP13.1□□□□□ -0.31
LSM3-201ENST00000306024 THRAP3Q9Y2W1 955 aaKnown RBP13.1□□□□□ -0.31
LSM3-201ENST00000306024 COL5A2P05997 1499 aaPredicted RBP13.1□□□□□ -0.31
LSM3-201ENST00000306024 GIGYF1O75420 1035 aaPredicted RBP13.1□□□□□ -0.31
LSM3-201ENST00000306024 GNAI3P08754 354 aa13.1□□□□□ -0.31
LSM3-201ENST00000306024 KCNJ4P48050 445 aa13.1□□□□□ -0.31
LSM3-201ENST00000306024 SNX21Q969T3 373 aa13.1□□□□□ -0.31
LSM3-201ENST00000306024 PRIMPOLQ96LW4 560 aa13.1□□□□□ -0.31
LSM3-201ENST00000306024 TSPY26PQ9H489 355 aa13.1□□□□□ -0.31
LSM3-201ENST00000306024 FAM182BQ5T319 152 aa13.09□□□□□ -0.31
LSM3-201ENST00000306024 DNAAF4Q8WXU2 420 aa13.09□□□□□ -0.31
LSM3-201ENST00000306024 LTN1O94822 1766 aa13.09□□□□□ -0.31
LSM3-201ENST00000306024 KIF6Q6ZMV9 814 aa13.09□□□□□ -0.31
LSM3-201ENST00000306024 ZNF830Q96NB3 372 aaPredicted RBP13.09□□□□□ -0.31
LSM3-201ENST00000306024 CAMTA1Q9Y6Y1 1673 aa13.09□□□□□ -0.31
LSM3-201ENST00000306024 MEGF6O75095 1541 aa13.09□□□□□ -0.31
LSM3-201ENST00000306024 HOXB7P09629 217 aa13.09□□□□□ -0.31
LSM3-201ENST00000306024 NOL8Q76FK4 1167 aaKnown RBP13.09□□□□□ -0.31
LSM3-201ENST00000306024 DRC7Q8IY82 874 aa13.09□□□□□ -0.31
LSM3-201ENST00000306024 SOS1Q07889 1333 aaPredicted RBP13.08□□□□□ -0.31
LSM3-201ENST00000306024 COPS6Q7L5N1 327 aa13.08□□□□□ -0.32
LSM3-201ENST00000306024 MYRIPQ8NFW9 859 aa13.08□□□□□ -0.32
LSM3-201ENST00000306024 TEX13AQ9BXU3 409 aaPredicted RBP13.08□□□□□ -0.32
LSM3-201ENST00000306024 LTBP4Q8N2S1 1624 aa13.08□□□□□ -0.32
LSM3-201ENST00000306024 SPATA31A1Q5TZJ5 1347 aa13.08□□□□□ -0.32
LSM3-201ENST00000306024 XAGE3Q8WTP9 111 aa13.08□□□□□ -0.32
LSM3-201ENST00000306024 NCAPD2Q15021 1401 aa13.08□□□□□ -0.32
LSM3-201ENST00000306024 ASAP1Q9ULH1 1129 aa13.08□□□□□ -0.32
LSM3-201ENST00000306024 USP16Q9Y5T5 823 aa13.08□□□□□ -0.32
LSM3-201ENST00000306024 PRAMEF22A3QJZ6 481 aa13.07□□□□□ -0.32
LSM3-201ENST00000306024 GTF2E1P29083 439 aaPredicted RBP13.07□□□□□ -0.32
LSM3-201ENST00000306024 MAP3K2Q9Y2U5 619 aa13.07□□□□□ -0.32
LSM3-201ENST00000306024 MBD3O95983 291 aa13.07□□□□□ -0.32
LSM3-201ENST00000306024 ZBTB3Q9H5J0 574 aa13.07□□□□□ -0.32
LSM3-201ENST00000306024 DDX21Q9NR30 783 aaKnown RBP eCLIP13.07□□□□□ -0.32
LSM3-201ENST00000306024 GNAI2P04899 355 aa13.07□□□□□ -0.32
LSM3-201ENST00000306024 ATP6V1AP38606 617 aa13.07□□□□□ -0.32
LSM3-201ENST00000306024 ZSCAN20P17040 1043 aaPredicted RBP13.06□□□□□ -0.32
LSM3-201ENST00000306024 ZNF445P59923 1031 aa13.06□□□□□ -0.32
LSM3-201ENST00000306024 VPS72Q15906 364 aa13.06□□□□□ -0.32
LSM3-201ENST00000306024 DNAJC10Q8IXB1 793 aa13.06□□□□□ -0.32
LSM3-201ENST00000306024 MYD88Q99836 296 aa13.06□□□□□ -0.32
LSM3-201ENST00000306024 ERICH4A6NGS2 130 aa13.06□□□□□ -0.32
LSM3-201ENST00000306024 A1BGP04217 495 aa13.06□□□□□ -0.32
LSM3-201ENST00000306024 NOLC1Q14978 699 aaKnown RBP eCLIP13.06□□□□□ -0.32
LSM3-201ENST00000306024 SMARCC1Q92922 1105 aaPredicted RBP13.06□□□□□ -0.32
LSM3-201ENST00000306024 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.06□□□□□ -0.32
LSM3-201ENST00000306024 SPATA31A5Q5VU36 1347 aa13.05□□□□□ -0.32
LSM3-201ENST00000306024 SPATA31A7Q8IWB4 1347 aa13.05□□□□□ -0.32
LSM3-201ENST00000306024 TAF7LQ5H9L4 462 aa13.05□□□□□ -0.32
LSM3-201ENST00000306024 PIGBQ92521 554 aa13.05□□□□□ -0.32
LSM3-201ENST00000306024 GOLGA6L6A8MZA4 724 aa13.05□□□□□ -0.32
LSM3-201ENST00000306024 ANKRD13DQ6ZTN6 518 aa13.05□□□□□ -0.32
LSM3-201ENST00000306024 LRSAM1Q6UWE0 723 aa13.05□□□□□ -0.32
LSM3-201ENST00000306024 PAXIP1Q6ZW49 1069 aaPredicted RBP13.05□□□□□ -0.32
LSM3-201ENST00000306024 GJD4Q96KN9 370 aaPredicted RBP13.05□□□□□ -0.32
LSM3-201ENST00000306024 JARID2Q92833 1246 aaPredicted RBP13.04□□□□□ -0.32
LSM3-201ENST00000306024 PHLPP1O60346 1717 aa13.04□□□□□ -0.32
LSM3-201ENST00000306024 ATP5J2-PTCD1G3V325 749 aa13.04□□□□□ -0.32
LSM3-201ENST00000306024 U2AF2P26368 475 aaKnown RBP eCLIP13.04□□□□□ -0.32
LSM3-201ENST00000306024 RABEP1Q15276 862 aa13.04□□□□□ -0.32
LSM3-201ENST00000306024 SEPT12Q8IYM1 358 aa13.04□□□□□ -0.32
LSM3-201ENST00000306024 MEIS3Q99687 375 aa13.04□□□□□ -0.32
LSM3-201ENST00000306024 CEMIPQ8WUJ3 1361 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 113.4 ms