RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 GOLGA8BA8MQT2 603 aa14.87□□□□□ -0.03
COL3A1-201ENST00000304636 PAFAH1B1P43034 410 aa14.87□□□□□ -0.03
COL3A1-201ENST00000304636 GNG11P61952 73 aa14.87□□□□□ -0.03
COL3A1-201ENST00000304636 MRPL50Q8N5N7 158 aaKnown RBP14.87□□□□□ -0.03
COL3A1-201ENST00000304636 C14orf93Q9H972 538 aaKnown RBP14.87□□□□□ -0.03
COL3A1-201ENST00000304636 DBF4Q9UBU7 674 aaPredicted RBP14.87□□□□□ -0.03
COL3A1-201ENST00000304636 ZNF213O14771 459 aa14.87□□□□□ -0.03
COL3A1-201ENST00000304636 PIK3C2GO75747 1445 aa14.87□□□□□ -0.03
COL3A1-201ENST00000304636 KDM2BQ8NHM5 1336 aa14.87□□□□□ -0.03
COL3A1-201ENST00000304636 PRAG1Q86YV5 1406 aa14.87□□□□□ -0.03
COL3A1-201ENST00000304636 PPP1R42Q7Z4L9 355 aa14.87□□□□□ -0.03
COL3A1-201ENST00000304636 ANKRD18AQ8IVF6 992 aa14.87□□□□□ -0.03
COL3A1-201ENST00000304636 CPLX3Q8WVH0 158 aa14.87□□□□□ -0.03
COL3A1-201ENST00000304636 RNF123Q5XPI4 1314 aa14.86□□□□□ -0.03
COL3A1-201ENST00000304636 SAMD1Q6SPF0 538 aaPredicted RBP14.86□□□□□ -0.03
COL3A1-201ENST00000304636 WAPLQ7Z5K2 1190 aa14.86□□□□□ -0.03
COL3A1-201ENST00000304636 INTS4Q96HW7 963 aaKnown RBP14.86□□□□□ -0.03
COL3A1-201ENST00000304636 INCENPQ9NQS7 918 aa14.86□□□□□ -0.03
COL3A1-201ENST00000304636 RLBP1P12271 317 aa14.86□□□□□ -0.03
COL3A1-201ENST00000304636 HYPKQ9NX55 129 aa14.86□□□□□ -0.03
COL3A1-201ENST00000304636 TTC21BQ7Z4L5 1316 aa14.86□□□□□ -0.03
COL3A1-201ENST00000304636 PIK3R4Q99570 1358 aa14.86□□□□□ -0.03
COL3A1-201ENST00000304636 SSRP1Q08945 709 aaKnown RBP14.86□□□□□ -0.03
COL3A1-201ENST00000304636 SRRTQ9BXP5 876 aaKnown RBP14.86□□□□□ -0.03
COL3A1-201ENST00000304636 TMX1Q9H3N1 280 aa14.86□□□□□ -0.03
COL3A1-201ENST00000304636 LRP2BPQ9P2M1 347 aa14.86□□□□□ -0.03
COL3A1-201ENST00000304636 SLU7O95391 586 aaKnown RBP14.85□□□□□ -0.03
COL3A1-201ENST00000304636 CCDC12Q8WUD4 166 aaPredicted RBP14.85□□□□□ -0.03
COL3A1-201ENST00000304636 MYD88Q99836 296 aa14.85□□□□□ -0.03
COL3A1-201ENST00000304636 KANK3Q6NY19 840 aa14.85□□□□□ -0.03
COL3A1-201ENST00000304636 KCNH5Q8NCM2 988 aa14.85□□□□□ -0.03
COL3A1-201ENST00000304636 SLC12A7Q9Y666 1083 aa14.85□□□□□ -0.03
COL3A1-201ENST00000304636 CTR9Q6PD62 1173 aa14.85□□□□□ -0.03
COL3A1-201ENST00000304636 THEMISQ8N1K5 641 aaPredicted RBP14.85□□□□□ -0.03
COL3A1-201ENST00000304636 RHPN1Q8TCX5 695 aa14.85□□□□□ -0.03
COL3A1-201ENST00000304636 NOS1P29475 1434 aa14.85□□□□□ -0.03
COL3A1-201ENST00000304636 AMOTQ4VCS5 1084 aa14.85□□□□□ -0.03
COL3A1-201ENST00000304636 CCDC102BQ68D86 513 aa14.85□□□□□ -0.03
COL3A1-201ENST00000304636 ZBTB40Q9NUA8 1239 aa14.85□□□□□ -0.03
COL3A1-201ENST00000304636 SSBP05455 408 aaKnown RBP eCLIP14.85□□□□□ -0.03
COL3A1-201ENST00000304636 SMAP1Q8IYB5 467 aaPredicted RBP14.85□□□□□ -0.03
COL3A1-201ENST00000304636 ARFGAP3Q9NP61 516 aa14.85□□□□□ -0.03
COL3A1-201ENST00000304636 DACT1Q9NYF0 836 aa14.85□□□□□ -0.03
COL3A1-201ENST00000304636 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.85□□□□□ -0.03
COL3A1-201ENST00000304636 METTL24Q5JXM2 366 aa14.84□□□□□ -0.03
COL3A1-201ENST00000304636 MEIS3Q99687 375 aa14.84□□□□□ -0.03
COL3A1-201ENST00000304636 FEZ1Q99689 392 aa14.84□□□□□ -0.03
COL3A1-201ENST00000304636 LUZP1Q86V48 1076 aa14.84□□□□□ -0.03
COL3A1-201ENST00000304636 NAPBQ9H115 298 aa14.84□□□□□ -0.03
COL3A1-201ENST00000304636 FGFR1OPO95684 399 aaKnown RBP14.84□□□□□ -0.03
COL3A1-201ENST00000304636 DCTPP1Q9H773 170 aa14.84□□□□□ -0.03
COL3A1-201ENST00000304636 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.84□□□□□ -0.03
COL3A1-201ENST00000304636 GOLGA8AA7E2F4 631 aa14.83□□□□□ -0.03
COL3A1-201ENST00000304636 DNM1Q05193 864 aaKnown RBP14.83□□□□□ -0.03
COL3A1-201ENST00000304636 CACNA2D4Q7Z3S7 1137 aa14.83□□□□□ -0.03
COL3A1-201ENST00000304636 NECAB1Q8N987 351 aa14.83□□□□□ -0.03
COL3A1-201ENST00000304636 SEPT11Q9NVA2 429 aaKnown RBP14.83□□□□□ -0.03
COL3A1-201ENST00000304636 USP16Q9Y5T5 823 aa14.83□□□□□ -0.03
COL3A1-201ENST00000304636 IVLP07476 585 aa14.83□□□□□ -0.04
COL3A1-201ENST00000304636 UBASH3AP57075 661 aa14.83□□□□□ -0.04
COL3A1-201ENST00000304636 FAM83GA6ND36 823 aa14.83□□□□□ -0.04
COL3A1-201ENST00000304636 TYRO3Q06418 890 aa14.83□□□□□ -0.04
COL3A1-201ENST00000304636 ORC3Q9UBD5 711 aaPredicted RBP14.83□□□□□ -0.04
COL3A1-201ENST00000304636 TNNQ9UQP3 1299 aa14.83□□□□□ -0.04
COL3A1-201ENST00000304636 WASLO00401 505 aaPredicted RBP14.83□□□□□ -0.04
COL3A1-201ENST00000304636 TERF1P54274 439 aa14.83□□□□□ -0.04
COL3A1-201ENST00000304636 TSG101Q99816 390 aa14.82□□□□□ -0.04
COL3A1-201ENST00000304636 DNAJC25Q9H1X3 360 aa14.82□□□□□ -0.04
COL3A1-201ENST00000304636 OGFRQ9NZT2 677 aa14.82□□□□□ -0.04
COL3A1-201ENST00000304636 DNAI1Q9UI46 699 aa14.82□□□□□ -0.04
COL3A1-201ENST00000304636 KCNG4Q8TDN1 519 aa14.82□□□□□ -0.04
COL3A1-201ENST00000304636 ALS2CR12Q96Q35 445 aa14.82□□□□□ -0.04
COL3A1-201ENST00000304636 NAA15Q9BXJ9 866 aaKnown RBP14.82□□□□□ -0.04
COL3A1-201ENST00000304636 POLR3DP05423 398 aaPredicted RBP14.82□□□□□ -0.04
COL3A1-201ENST00000304636 RNF187Q5TA31 235 aaPredicted RBP14.82□□□□□ -0.04
COL3A1-201ENST00000304636 ZGPATQ8N5A5 531 aaKnown RBP14.82□□□□□ -0.04
COL3A1-201ENST00000304636 EHBP1Q8NDI1 1231 aa14.82□□□□□ -0.04
COL3A1-201ENST00000304636 SLC26A8Q96RN1 970 aa14.82□□□□□ -0.04
COL3A1-201ENST00000304636 PYM1Q9BRP8 204 aaKnown RBP14.82□□□□□ -0.04
COL3A1-201ENST00000304636 MAP2K1Q02750 393 aaPredicted RBP14.82□□□□□ -0.04
COL3A1-201ENST00000304636 USP26Q9BXU7 913 aa14.82□□□□□ -0.04
COL3A1-201ENST00000304636 MRPS27Q92552 414 aaKnown RBP14.81□□□□□ -0.04
COL3A1-201ENST00000304636 IARSP41252 1262 aaKnown RBP14.81□□□□□ -0.04
COL3A1-201ENST00000304636 ATP8B2P98198 1209 aa14.81□□□□□ -0.04
COL3A1-201ENST00000304636 C16orf71Q8IYS4 520 aaPredicted RBP14.81□□□□□ -0.04
COL3A1-201ENST00000304636 SYKP43405 635 aa14.81□□□□□ -0.04
COL3A1-201ENST00000304636 SPINK5Q9NQ38 1064 aaPredicted RBP14.81□□□□□ -0.04
COL3A1-201ENST00000304636 GPATCH8Q9UKJ3 1502 aaKnown RBP14.81□□□□□ -0.04
COL3A1-201ENST00000304636 RAPGEF3O95398 923 aa14.81□□□□□ -0.04
COL3A1-201ENST00000304636 VPS36Q86VN1 386 aa14.81□□□□□ -0.04
COL3A1-201ENST00000304636 DYDC1Q8WWB3 177 aa14.81□□□□□ -0.04
COL3A1-201ENST00000304636 PIBF1Q8WXW3 757 aa14.81□□□□□ -0.04
COL3A1-201ENST00000304636 RBSNQ9H1K0 784 aa14.81□□□□□ -0.04
COL3A1-201ENST00000304636 RNF41Q9H4P4 317 aaPredicted RBP14.81□□□□□ -0.04
COL3A1-201ENST00000304636 GBP2P32456 591 aaPredicted RBP14.8□□□□□ -0.04
COL3A1-201ENST00000304636 PLEKHM2Q8IWE5 1019 aa14.8□□□□□ -0.04
COL3A1-201ENST00000304636 EIF2AK4Q9P2K8 1649 aaKnown RBP14.8□□□□□ -0.04
COL3A1-201ENST00000304636 IFFO1Q0D2I5 559 aa14.8□□□□□ -0.04
COL3A1-201ENST00000304636 TOM1L2Q6ZVM7 507 aa14.8□□□□□ -0.04
COL3A1-201ENST00000304636 MAP3K2Q9Y2U5 619 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms