RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 NUTM1Q86Y26 1132 aa11.94□□□□□ -0.5
CLIP1-201ENST00000302528 FAM114A1Q8IWE2 563 aa11.94□□□□□ -0.5
CLIP1-201ENST00000302528 SLC12A7Q9Y666 1083 aa11.94□□□□□ -0.5
CLIP1-201ENST00000302528 IFIT1P09914 478 aaKnown RBP11.94□□□□□ -0.5
CLIP1-201ENST00000302528 GUCY1B3Q02153 619 aa11.94□□□□□ -0.5
CLIP1-201ENST00000302528 IFI16Q16666 785 aaKnown RBP11.94□□□□□ -0.5
CLIP1-201ENST00000302528 C16orf45Q96MC5 204 aaPredicted RBP11.94□□□□□ -0.5
CLIP1-201ENST00000302528 STAC3Q96MF2 364 aa11.94□□□□□ -0.5
CLIP1-201ENST00000302528 PLVAPQ9BX97 442 aa11.94□□□□□ -0.5
CLIP1-201ENST00000302528 BTBD11A6QL63 1104 aa11.94□□□□□ -0.5
CLIP1-201ENST00000302528 CTAGE5O15320 804 aa11.94□□□□□ -0.5
CLIP1-201ENST00000302528 PRPF40BQ6NWY9 871 aaKnown RBP11.94□□□□□ -0.5
CLIP1-201ENST00000302528 RPUSD2Q8IZ73 545 aaKnown RBP11.94□□□□□ -0.5
CLIP1-201ENST00000302528 SSRP1Q08945 709 aaKnown RBP11.93□□□□□ -0.5
CLIP1-201ENST00000302528 SAMM50Q9Y512 469 aa11.93□□□□□ -0.5
CLIP1-201ENST00000302528 NEMFO60524 1076 aa11.93□□□□□ -0.5
CLIP1-201ENST00000302528 TCP11L1Q9NUJ3 509 aa11.93□□□□□ -0.5
CLIP1-201ENST00000302528 BRD4O60885 1362 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-201ENST00000302528 A0A087WZG4 1122 aa11.93□□□□□ -0.5
CLIP1-201ENST00000302528 SH3BP5O60239 455 aa11.93□□□□□ -0.5
CLIP1-201ENST00000302528 GSDMDP57764 484 aa11.93□□□□□ -0.5
CLIP1-201ENST00000302528 TMC6Q7Z403 805 aa11.93□□□□□ -0.5
CLIP1-201ENST00000302528 CCDC63Q8NA47 563 aa11.93□□□□□ -0.5
CLIP1-201ENST00000302528 BICD1Q96G01 975 aa11.93□□□□□ -0.5
CLIP1-201ENST00000302528 ANKIB1Q9P2G1 1089 aa11.93□□□□□ -0.5
CLIP1-201ENST00000302528 MAP3K1Q13233 1512 aa11.93□□□□□ -0.5
CLIP1-201ENST00000302528 STX6O43752 255 aa11.93□□□□□ -0.5
CLIP1-201ENST00000302528 ATF7IPQ6VMQ6 1270 aa11.93□□□□□ -0.5
CLIP1-201ENST00000302528 ZFP91Q96JP5 570 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-201ENST00000302528 GOLGA6L9A6NEM1 432 aa11.92□□□□□ -0.5
CLIP1-201ENST00000302528 CLGNO14967 610 aa11.92□□□□□ -0.5
CLIP1-201ENST00000302528 HMGB2P26583 209 aaKnown RBP11.92□□□□□ -0.5
CLIP1-201ENST00000302528 MAP3K9P80192 1104 aa11.92□□□□□ -0.5
CLIP1-201ENST00000302528 ZNF652Q9Y2D9 606 aa11.92□□□□□ -0.5
CLIP1-201ENST00000302528 CCDC172P0C7W6 258 aa11.92□□□□□ -0.5
CLIP1-201ENST00000302528 UTP14AQ9BVJ6 771 aaKnown RBP11.92□□□□□ -0.5
CLIP1-201ENST00000302528 MMRN2Q9H8L6 949 aa11.92□□□□□ -0.5
CLIP1-201ENST00000302528 ZBTB16Q05516 673 aa11.92□□□□□ -0.5
CLIP1-201ENST00000302528 MVPQ14764 893 aaKnown RBP11.92□□□□□ -0.5
CLIP1-201ENST00000302528 MSL1Q68DK7 614 aa11.92□□□□□ -0.5
CLIP1-201ENST00000302528 CCDC77Q9BR77 488 aa11.92□□□□□ -0.5
CLIP1-201ENST00000302528 STARD3NLO95772 234 aa11.91□□□□□ -0.5
CLIP1-201ENST00000302528 MAP3K12Q12852 859 aa11.91□□□□□ -0.5
CLIP1-201ENST00000302528 CEP83Q9Y592 693 aa11.91□□□□□ -0.5
CLIP1-201ENST00000302528 GOLGA8AA7E2F4 631 aa11.91□□□□□ -0.5
CLIP1-201ENST00000302528 GOLGA8BA8MQT2 603 aa11.91□□□□□ -0.5
CLIP1-201ENST00000302528 PPP2R1AP30153 589 aa11.91□□□□□ -0.5
CLIP1-201ENST00000302528 CKAP2LQ8IYA6 745 aa11.91□□□□□ -0.5
CLIP1-201ENST00000302528 EHBP1Q8NDI1 1231 aa11.91□□□□□ -0.5
CLIP1-201ENST00000302528 MKRN1Q9UHC7 482 aaKnown RBP11.91□□□□□ -0.5
CLIP1-201ENST00000302528 HMGXB3Q12766 1538 aa11.91□□□□□ -0.5
CLIP1-201ENST00000302528 CCDC184Q52MB2 194 aa11.91□□□□□ -0.5
CLIP1-201ENST00000302528 HYPKQ9NX55 129 aa11.91□□□□□ -0.5
CLIP1-201ENST00000302528 XPCQ01831 940 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-201ENST00000302528 SNW1Q13573 536 aaKnown RBP11.91□□□□□ -0.5
CLIP1-201ENST00000302528 LRSAM1Q6UWE0 723 aa11.91□□□□□ -0.5
CLIP1-201ENST00000302528 SMC1BQ8NDV3 1235 aa11.91□□□□□ -0.5
CLIP1-201ENST00000302528 CCDC12Q8WUD4 166 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-201ENST00000302528 TBC1D5Q92609 795 aa11.91□□□□□ -0.5
CLIP1-201ENST00000302528 RNF41Q9H4P4 317 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-201ENST00000302528 ZSWIM4Q9H7M6 989 aa11.91□□□□□ -0.5
CLIP1-201ENST00000302528 ZNF644Q9H582 1327 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-201ENST00000302528 CATIPQ7Z7H3 387 aa11.91□□□□□ -0.5
CLIP1-201ENST00000302528 FSIP1Q8NA03 581 aa11.9□□□□□ -0.5
CLIP1-201ENST00000302528 PRDM11Q9NQV5 511 aa11.9□□□□□ -0.5
CLIP1-201ENST00000302528 ZPR1O75312 459 aa11.9□□□□□ -0.5
CLIP1-201ENST00000302528 HMGB1P09429 215 aaKnown RBP11.9□□□□□ -0.5
CLIP1-201ENST00000302528 SLF2Q8IX21 1173 aa11.9□□□□□ -0.5
CLIP1-201ENST00000302528 RPAP2Q8IXW5 612 aaPredicted RBP11.9□□□□□ -0.5
CLIP1-201ENST00000302528 CCDC144CPQ8IYA2 1237 aa11.9□□□□□ -0.5
CLIP1-201ENST00000302528 ODF2LQ9ULJ1 636 aa11.9□□□□□ -0.5
CLIP1-201ENST00000302528 PEG3Q9GZU2 1588 aa11.9□□□□□ -0.5
CLIP1-201ENST00000302528 BIN1O00499 593 aa11.9□□□□□ -0.5
CLIP1-201ENST00000302528 ZNF213O14771 459 aa11.9□□□□□ -0.5
CLIP1-201ENST00000302528 AKR1B10O60218 316 aa11.9□□□□□ -0.5
CLIP1-201ENST00000302528 CEP135Q66GS9 1140 aa11.9□□□□□ -0.5
CLIP1-201ENST00000302528 SH2B1Q9NRF2 756 aaPredicted RBP11.9□□□□□ -0.5
CLIP1-201ENST00000302528 IFIT3O14879 490 aaKnown RBP11.9□□□□□ -0.51
CLIP1-201ENST00000302528 TBCAO75347 108 aaKnown RBP11.9□□□□□ -0.51
CLIP1-201ENST00000302528 RASAL2Q9UJF2 1139 aa11.9□□□□□ -0.51
CLIP1-201ENST00000302528 GLRX3O76003 335 aaKnown RBP11.89□□□□□ -0.51
CLIP1-201ENST00000302528 SRRTQ9BXP5 876 aaKnown RBP11.89□□□□□ -0.51
CLIP1-201ENST00000302528 TXNDC2Q86VQ3 553 aa11.89□□□□□ -0.51
CLIP1-201ENST00000302528 OSCARQ8IYS5 282 aa11.89□□□□□ -0.51
CLIP1-201ENST00000302528 MPHOSPH6Q99547 160 aaKnown RBP11.89□□□□□ -0.51
CLIP1-201ENST00000302528 USP25Q9UHP3 1055 aa11.89□□□□□ -0.51
CLIP1-201ENST00000302528 PPP4R3BQ5MIZ7 849 aa11.89□□□□□ -0.51
CLIP1-201ENST00000302528 ATRIPQ8WXE1 791 aa11.89□□□□□ -0.51
CLIP1-201ENST00000302528 KIF1BPQ96EK5 621 aa11.89□□□□□ -0.51
CLIP1-201ENST00000302528 SNX16P57768 344 aa11.89□□□□□ -0.51
CLIP1-201ENST00000302528 GNG11P61952 73 aa11.89□□□□□ -0.51
CLIP1-201ENST00000302528 NBPF8Q3BBV2 869 aa11.89□□□□□ -0.51
CLIP1-201ENST00000302528 TTC14Q96N46 770 aa11.89□□□□□ -0.51
CLIP1-201ENST00000302528 LRRC27Q9C0I9 530 aa11.89□□□□□ -0.51
CLIP1-201ENST00000302528 GOLIM4O00461 696 aa11.89□□□□□ -0.51
CLIP1-201ENST00000302528 ATP2A1O14983 1001 aa11.89□□□□□ -0.51
CLIP1-201ENST00000302528 BOLA2Q9H3K6 86 aa11.89□□□□□ -0.51
CLIP1-201ENST00000302528 UBA7P41226 1012 aa11.88□□□□□ -0.51
CLIP1-201ENST00000302528 GTF2A1P52655 376 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-201ENST00000302528 STX1AQ16623 288 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms