RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 U2AF1Q01081 240 aaKnown RBP eCLIP8.68□□□□□ -1.02
DEPDC4-201ENST00000299185 SULT6B1Q6IMI4 303 aa8.68□□□□□ -1.02
DEPDC4-201ENST00000299185 TOM1L2Q6ZVM7 507 aa8.68□□□□□ -1.02
DEPDC4-201ENST00000299185 KIF24Q5T7B8 1368 aa8.68□□□□□ -1.02
DEPDC4-201ENST00000299185 DISP2A7MBM2 1401 aa8.68□□□□□ -1.02
DEPDC4-201ENST00000299185 SHANK3Q9BYB0 1731 aa8.68□□□□□ -1.02
DEPDC4-201ENST00000299185 GRXCR2A6NFK2 248 aa8.67□□□□□ -1.02
DEPDC4-201ENST00000299185 CCER2I3L3R5 266 aa8.67□□□□□ -1.02
DEPDC4-201ENST00000299185 PRKAR2BP31323 418 aa8.67□□□□□ -1.02
DEPDC4-201ENST00000299185 EVA1CP58658 441 aa8.67□□□□□ -1.02
DEPDC4-201ENST00000299185 UNC5CLQ8IV45 518 aa8.67□□□□□ -1.02
DEPDC4-201ENST00000299185 THSD7AQ9UPZ6 1657 aa8.67□□□□□ -1.02
DEPDC4-201ENST00000299185 RRP7AQ9Y3A4 280 aaKnown RBP8.67□□□□□ -1.02
DEPDC4-201ENST00000299185 PARP4Q9UKK3 1724 aaKnown RBP8.66□□□□□ -1.02
DEPDC4-201ENST00000299185 SPATA31A5Q5VU36 1347 aa8.66□□□□□ -1.02
DEPDC4-201ENST00000299185 SPATA31A7Q8IWB4 1347 aa8.66□□□□□ -1.02
DEPDC4-201ENST00000299185 PRR20EP86478 221 aa8.66□□□□□ -1.02
DEPDC4-201ENST00000299185 PRR20CP86479 221 aa8.66□□□□□ -1.02
DEPDC4-201ENST00000299185 PRR20DP86480 221 aa8.66□□□□□ -1.02
DEPDC4-201ENST00000299185 PRR20BP86481 221 aa8.66□□□□□ -1.02
DEPDC4-201ENST00000299185 PRR20AP86496 221 aa8.66□□□□□ -1.02
DEPDC4-201ENST00000299185 MYT1Q01538 1121 aa8.66□□□□□ -1.02
DEPDC4-201ENST00000299185 WDR43Q15061 677 aaKnown RBP eCLIP8.66□□□□□ -1.02
DEPDC4-201ENST00000299185 ZNF772Q68DY9 489 aaPredicted RBP8.66□□□□□ -1.02
DEPDC4-201ENST00000299185 FNBP4Q8N3X1 1017 aaPredicted RBP8.66□□□□□ -1.02
DEPDC4-201ENST00000299185 PNISRQ8TF01 805 aaKnown RBP8.66□□□□□ -1.02
DEPDC4-201ENST00000299185 YTHDC1Q96MU7 727 aaKnown RBP8.66□□□□□ -1.02
DEPDC4-201ENST00000299185 RSPH6AQ9H0K4 717 aa8.66□□□□□ -1.02
DEPDC4-201ENST00000299185 ADAMTS8Q9UP79 889 aa8.66□□□□□ -1.02
DEPDC4-201ENST00000299185 PKD1L3Q7Z443 1732 aa8.66□□□□□ -1.02
DEPDC4-201ENST00000299185 OVOS2A0A0G2JMS6 1433 aa8.65□□□□□ -1.02
DEPDC4-201ENST00000299185 RGS12O14924 1447 aa8.65□□□□□ -1.02
DEPDC4-201ENST00000299185 SPATA31A1Q5TZJ5 1347 aa8.65□□□□□ -1.02
DEPDC4-201ENST00000299185 VPS72Q15906 364 aa8.65□□□□□ -1.02
DEPDC4-201ENST00000299185 TRIM67Q6ZTA4 783 aa8.65□□□□□ -1.02
DEPDC4-201ENST00000299185 SPRYD3Q8NCJ5 442 aa8.65□□□□□ -1.02
DEPDC4-201ENST00000299185 PHACTR3Q96KR7 559 aa8.65□□□□□ -1.02
DEPDC4-201ENST00000299185 KDRP35968 1356 aa8.64□□□□□ -1.03
DEPDC4-201ENST00000299185 TOGARAM1Q9Y4F4 1720 aa8.64□□□□□ -1.03
DEPDC4-201ENST00000299185 SWT1Q5T5J6 900 aaKnown RBP8.64□□□□□ -1.03
DEPDC4-201ENST00000299185 PAXIP1Q6ZW49 1069 aaPredicted RBP8.64□□□□□ -1.03
DEPDC4-201ENST00000299185 ZNF598Q86UK7 904 aaKnown RBP8.64□□□□□ -1.03
DEPDC4-201ENST00000299185 CFAP44Q96MT7 982 aa8.64□□□□□ -1.03
DEPDC4-201ENST00000299185 CDHR5Q9HBB8 845 aa8.64□□□□□ -1.03
DEPDC4-201ENST00000299185 SALL2Q9Y467 1007 aaPredicted RBP8.64□□□□□ -1.03
DEPDC4-201ENST00000299185 TNS2Q63HR2 1409 aa8.63□□□□□ -1.03
DEPDC4-201ENST00000299185 RNF223E7ERA6 249 aa8.63□□□□□ -1.03
DEPDC4-201ENST00000299185 RXRBP28702 533 aa8.63□□□□□ -1.03
DEPDC4-201ENST00000299185 FAM182BQ5T319 152 aa8.63□□□□□ -1.03
DEPDC4-201ENST00000299185 SPRYD7Q5W111 196 aa8.63□□□□□ -1.03
DEPDC4-201ENST00000299185 CARD10Q9BWT7 1032 aa8.63□□□□□ -1.03
DEPDC4-201ENST00000299185 NUDCQ9Y266 331 aa8.63□□□□□ -1.03
DEPDC4-201ENST00000299185 TCP11L2Q8N4U5 519 aa8.62□□□□□ -1.03
DEPDC4-201ENST00000299185 PLEKHF1Q96S99 279 aa8.62□□□□□ -1.03
DEPDC4-201ENST00000299185 THUMPD2Q9BTF0 503 aaKnown RBP8.62□□□□□ -1.03
DEPDC4-201ENST00000299185 QTRT2Q9H974 415 aaKnown RBP8.62□□□□□ -1.03
DEPDC4-201ENST00000299185 TRPC5Q9UL62 973 aaPredicted RBP8.62□□□□□ -1.03
DEPDC4-201ENST00000299185 ARIH1Q9Y4X5 557 aaPredicted RBP8.62□□□□□ -1.03
DEPDC4-201ENST00000299185 PCDHB3Q9Y5E6 796 aa8.62□□□□□ -1.03
DEPDC4-201ENST00000299185 KDM6AO15550 1401 aaPredicted RBP8.62□□□□□ -1.03
DEPDC4-201ENST00000299185 BRWD3Q6RI45 1802 aa8.61□□□□□ -1.03
DEPDC4-201ENST00000299185 DOT1LQ8TEK3 1739 aa8.61□□□□□ -1.03
DEPDC4-201ENST00000299185 APAF1O14727 1248 aa8.61□□□□□ -1.03
DEPDC4-201ENST00000299185 IL2RBP14784 551 aa8.61□□□□□ -1.03
DEPDC4-201ENST00000299185 TATP17735 454 aaPredicted RBP8.61□□□□□ -1.03
DEPDC4-201ENST00000299185 OSBPP22059 807 aa8.61□□□□□ -1.03
DEPDC4-201ENST00000299185 DCTN1Q14203 1278 aa8.61□□□□□ -1.03
DEPDC4-201ENST00000299185 NEUROD2Q15784 382 aa8.61□□□□□ -1.03
DEPDC4-201ENST00000299185 MTHFSDQ2M296 383 aaKnown RBP8.61□□□□□ -1.03
DEPDC4-201ENST00000299185 ZNF530Q6P9A1 599 aaPredicted RBP8.61□□□□□ -1.03
DEPDC4-201ENST00000299185 TTC13Q8NBP0 860 aa8.61□□□□□ -1.03
DEPDC4-201ENST00000299185 GJD4Q96KN9 370 aaPredicted RBP8.61□□□□□ -1.03
DEPDC4-201ENST00000299185 DLG5Q8TDM6 1919 aa8.6□□□□□ -1.03
DEPDC4-201ENST00000299185 POTECB2RU33 542 aa8.6□□□□□ -1.03
DEPDC4-201ENST00000299185 TREML4Q6UXN2 200 aa8.6□□□□□ -1.03
DEPDC4-201ENST00000299185 ANKLE1Q8NAG6 615 aa8.6□□□□□ -1.03
DEPDC4-201ENST00000299185 RAPGEF4Q8WZA2 1011 aa8.6□□□□□ -1.03
DEPDC4-201ENST00000299185 EMID1Q96A84 441 aaPredicted RBP8.6□□□□□ -1.03
DEPDC4-201ENST00000299185 MAPK8IP3Q9UPT6 1336 aa8.59□□□□□ -1.03
DEPDC4-201ENST00000299185 CYP27B1O15528 508 aa8.59□□□□□ -1.03
DEPDC4-201ENST00000299185 E2F4Q16254 413 aa8.59□□□□□ -1.03
DEPDC4-201ENST00000299185 SEPT12Q8IYM1 358 aa8.59□□□□□ -1.03
DEPDC4-201ENST00000299185 DDX54Q8TDD1 881 aaKnown RBP8.59□□□□□ -1.03
DEPDC4-201ENST00000299185 HNRNPUQ00839 825 aaKnown RBP eCLIP8.58□□□□□ -1.04
DEPDC4-201ENST00000299185 NFE2L2Q16236 605 aa8.58□□□□□ -1.04
DEPDC4-201ENST00000299185 MCM10Q7L590 875 aa8.58□□□□□ -1.04
DEPDC4-201ENST00000299185 PTF1AQ7RTS3 328 aa8.58□□□□□ -1.04
DEPDC4-201ENST00000299185 MARCH10Q8NA82 808 aaPredicted RBP8.58□□□□□ -1.04
DEPDC4-201ENST00000299185 RUNDC1Q96C34 613 aa8.58□□□□□ -1.04
DEPDC4-201ENST00000299185 MAP3K5Q99683 1374 aa8.58□□□□□ -1.04
DEPDC4-201ENST00000299185 FAM187AA6NFU0 413 aa8.57□□□□□ -1.04
DEPDC4-201ENST00000299185 FCHSD2O94868 740 aa8.57□□□□□ -1.04
DEPDC4-201ENST00000299185 PHKG2P15735 406 aa8.57□□□□□ -1.04
DEPDC4-201ENST00000299185 TMPOP42166 694 aaKnown RBP8.57□□□□□ -1.04
DEPDC4-201ENST00000299185 ZNF697Q5TEC3 545 aa8.57□□□□□ -1.04
DEPDC4-201ENST00000299185 PADI6Q6TGC4 694 aa8.57□□□□□ -1.04
DEPDC4-201ENST00000299185 MPRIPQ6WCQ1 1025 aa8.57□□□□□ -1.04
DEPDC4-201ENST00000299185 BARGINQ6ZT62 677 aa8.57□□□□□ -1.04
DEPDC4-201ENST00000299185 ZCRB1Q8TBF4 217 aaKnown RBP8.57□□□□□ -1.04
DEPDC4-201ENST00000299185 ACSBG1Q96GR2 724 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms