RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 IDEP14735 1019 aa13.3□□□□□ -0.28
USP53-201ENST00000274030 JAKMIP3Q5VZ66 844 aa13.3□□□□□ -0.28
USP53-201ENST00000274030 SPTY2D1Q68D10 685 aaPredicted RBP13.3□□□□□ -0.28
USP53-201ENST00000274030 NUP88Q99567 741 aaPredicted RBP13.3□□□□□ -0.28
USP53-201ENST00000274030 TMEM67Q5HYA8 995 aa13.29□□□□□ -0.28
USP53-201ENST00000274030 DDX46Q7L014 1031 aaKnown RBP13.29□□□□□ -0.28
USP53-201ENST00000274030 CATIPQ7Z7H3 387 aa13.29□□□□□ -0.28
USP53-201ENST00000274030 ABCC5O15440 1437 aa13.29□□□□□ -0.28
USP53-201ENST00000274030 TDRD12Q587J7 1177 aaKnown RBP13.29□□□□□ -0.28
USP53-201ENST00000274030 LRRC2Q9BYS8 371 aa13.29□□□□□ -0.28
USP53-201ENST00000274030 CAMSAP2Q08AD1 1489 aa13.29□□□□□ -0.28
USP53-201ENST00000274030 IQSEC3Q9UPP2 1182 aaPredicted RBP13.29□□□□□ -0.28
USP53-201ENST00000274030 C16orf45Q96MC5 204 aaPredicted RBP13.29□□□□□ -0.28
USP53-201ENST00000274030 TSG101Q99816 390 aa13.29□□□□□ -0.28
USP53-201ENST00000274030 PTPRCP08575 1304 aa13.29□□□□□ -0.28
USP53-201ENST00000274030 STX6O43752 255 aa13.28□□□□□ -0.28
USP53-201ENST00000274030 TTLL12Q14166 644 aaPredicted RBP13.28□□□□□ -0.28
USP53-201ENST00000274030 NECAB1Q8N987 351 aa13.28□□□□□ -0.28
USP53-201ENST00000274030 CRACR2AQ9BSW2 395 aa13.28□□□□□ -0.28
USP53-201ENST00000274030 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.28□□□□□ -0.28
USP53-201ENST00000274030 RNF41Q9H4P4 317 aaPredicted RBP13.28□□□□□ -0.28
USP53-201ENST00000274030 CWC25Q9NXE8 425 aaPredicted RBP13.28□□□□□ -0.28
USP53-201ENST00000274030 PRKCSHP14314 528 aaPredicted RBP13.28□□□□□ -0.28
USP53-201ENST00000274030 IARSP41252 1262 aaKnown RBP13.28□□□□□ -0.28
USP53-201ENST00000274030 ORC3Q9UBD5 711 aaPredicted RBP13.28□□□□□ -0.28
USP53-201ENST00000274030 ACEP12821 1306 aa13.28□□□□□ -0.28
USP53-201ENST00000274030 NOS1P29475 1434 aa13.28□□□□□ -0.28
USP53-201ENST00000274030 KIF5CO60282 957 aa13.28□□□□□ -0.28
USP53-201ENST00000274030 TMCO3Q6UWJ1 677 aa13.28□□□□□ -0.28
USP53-201ENST00000274030 TOP2BQ02880 1626 aa13.28□□□□□ -0.28
USP53-201ENST00000274030 TSPY2A6NKD2 308 aa13.28□□□□□ -0.28
USP53-201ENST00000274030 MAPK8IP2Q13387 824 aaPredicted RBP13.28□□□□□ -0.28
USP53-201ENST00000274030 IFNL2Q8IZJ0 200 aa13.28□□□□□ -0.28
USP53-201ENST00000274030 ANKRD24Q8TF21 1146 aa13.28□□□□□ -0.28
USP53-201ENST00000274030 ZSCAN12O43309 604 aa13.27□□□□□ -0.28
USP53-201ENST00000274030 CALRP27797 417 aaKnown RBP13.27□□□□□ -0.28
USP53-201ENST00000274030 CASQ1P31415 396 aa13.27□□□□□ -0.28
USP53-201ENST00000274030 TMEM266Q2M3C6 531 aa13.27□□□□□ -0.28
USP53-201ENST00000274030 CCDC178Q5BJE1 867 aa13.27□□□□□ -0.28
USP53-201ENST00000274030 MEIS3Q99687 375 aa13.27□□□□□ -0.28
USP53-201ENST00000274030 SLC26A6Q9BXS9 759 aa13.27□□□□□ -0.28
USP53-201ENST00000274030 DISP3Q9P2K9 1392 aa13.27□□□□□ -0.28
USP53-201ENST00000274030 GBP2P32456 591 aaPredicted RBP13.27□□□□□ -0.29
USP53-201ENST00000274030 KIF18AQ8NI77 898 aa13.27□□□□□ -0.29
USP53-201ENST00000274030 DESP17661 470 aa13.27□□□□□ -0.29
USP53-201ENST00000274030 TCERG1LQ5VWI1 586 aa13.27□□□□□ -0.29
USP53-201ENST00000274030 CTNNBL1Q8WYA6 563 aaPredicted RBP13.27□□□□□ -0.29
USP53-201ENST00000274030 NEK1Q96PY6 1258 aa13.27□□□□□ -0.29
USP53-201ENST00000274030 POTEJP0CG39 1038 aa13.27□□□□□ -0.29
USP53-201ENST00000274030 SLC39A6Q13433 755 aa13.27□□□□□ -0.29
USP53-201ENST00000274030 TMC6Q7Z403 805 aa13.27□□□□□ -0.29
USP53-201ENST00000274030 CUL5Q93034 780 aa13.27□□□□□ -0.29
USP53-201ENST00000274030 RAB34Q9BZG1 259 aa13.26□□□□□ -0.29
USP53-201ENST00000274030 ADGRL1O94910 1474 aa13.26□□□□□ -0.29
USP53-201ENST00000274030 GOLGA6L7A0A1B0GV03 622 aa13.26□□□□□ -0.29
USP53-201ENST00000274030 CBX1P83916 185 aa13.26□□□□□ -0.29
USP53-201ENST00000274030 MTIF2P46199 727 aaKnown RBP13.26□□□□□ -0.29
USP53-201ENST00000274030 KIAA0586Q9BVV6 1533 aa13.26□□□□□ -0.29
USP53-201ENST00000274030 USP8P40818 1118 aa13.26□□□□□ -0.29
USP53-201ENST00000274030 LUZP1Q86V48 1076 aa13.26□□□□□ -0.29
USP53-201ENST00000274030 PRDM10Q9NQV6 1147 aa13.26□□□□□ -0.29
USP53-201ENST00000274030 CHPF2Q9P2E5 772 aa13.26□□□□□ -0.29
USP53-201ENST00000274030 GOPCQ9HD26 462 aa13.26□□□□□ -0.29
USP53-201ENST00000274030 METAP2P50579 478 aaKnown RBP eCLIP13.25□□□□□ -0.29
USP53-201ENST00000274030 HSP90AA4PQ58FG1 418 aa13.25□□□□□ -0.29
USP53-201ENST00000274030 BMP2KLQ5H9B9 411 aa13.25□□□□□ -0.29
USP53-201ENST00000274030 TTC22Q5TAA0 569 aa13.25□□□□□ -0.29
USP53-201ENST00000274030 MFSD6Q6ZSS7 791 aa13.25□□□□□ -0.29
USP53-201ENST00000274030 FEZ1Q99689 392 aa13.25□□□□□ -0.29
USP53-201ENST00000274030 PHAXQ9H814 394 aaKnown RBP13.25□□□□□ -0.29
USP53-201ENST00000274030 ANKRD13DQ6ZTN6 518 aa13.25□□□□□ -0.29
USP53-201ENST00000274030 BRF1Q92994 677 aa13.25□□□□□ -0.29
USP53-201ENST00000274030 STX8Q9UNK0 236 aa13.25□□□□□ -0.29
USP53-201ENST00000274030 EZRP15311 586 aaKnown RBP13.25□□□□□ -0.29
USP53-201ENST00000274030 DYDC1Q8WWB3 177 aa13.25□□□□□ -0.29
USP53-201ENST00000274030 GSTTP1A0A1W2PQM5 241 aa13.24□□□□□ -0.29
USP53-201ENST00000274030 BAG4O95429 457 aaKnown RBP13.24□□□□□ -0.29
USP53-201ENST00000274030 RHPN1Q8TCX5 695 aa13.24□□□□□ -0.29
USP53-201ENST00000274030 ADCY5O95622 1261 aa13.24□□□□□ -0.29
USP53-201ENST00000274030 PPP4R3AQ6IN85 833 aa13.24□□□□□ -0.29
USP53-201ENST00000274030 CETN2P41208 172 aa13.24□□□□□ -0.29
USP53-201ENST00000274030 ZNF622Q969S3 477 aaKnown RBP eCLIP13.24□□□□□ -0.29
USP53-201ENST00000274030 CDC5LQ99459 802 aaKnown RBP13.24□□□□□ -0.29
USP53-201ENST00000274030 BCCIPQ9P287 314 aaKnown RBP eCLIP13.24□□□□□ -0.29
USP53-201ENST00000274030 GIMAP6Q6P9H5 292 aa13.24□□□□□ -0.29
USP53-201ENST00000274030 VPS36Q86VN1 386 aa13.24□□□□□ -0.29
USP53-201ENST00000274030 KAT14Q9H8E8 782 aa13.24□□□□□ -0.29
USP53-201ENST00000274030 DNAJC5BQ9UF47 199 aa13.24□□□□□ -0.29
USP53-201ENST00000274030 POLR3GO15318 223 aaPredicted RBP13.24□□□□□ -0.29
USP53-201ENST00000274030 SDSP20132 328 aa13.24□□□□□ -0.29
USP53-201ENST00000274030 ZNF165P49910 485 aa13.24□□□□□ -0.29
USP53-201ENST00000274030 ACSBG1Q96GR2 724 aa13.24□□□□□ -0.29
USP53-201ENST00000274030 PCF11O94913 1555 aaKnown RBP13.24□□□□□ -0.29
USP53-201ENST00000274030 SNRPA1P09661 255 aaKnown RBP13.23□□□□□ -0.29
USP53-201ENST00000274030 TCP11L1Q9NUJ3 509 aa13.23□□□□□ -0.29
USP53-201ENST00000274030 DDX19AQ9NUU7 478 aaKnown RBP13.23□□□□□ -0.29
USP53-201ENST00000274030 CC2D2AQ9P2K1 1620 aa13.23□□□□□ -0.29
USP53-201ENST00000274030 UBA7P41226 1012 aa13.23□□□□□ -0.29
USP53-201ENST00000274030 ZSWIM4Q9H7M6 989 aa13.23□□□□□ -0.29
USP53-201ENST00000274030 SAMM50Q9Y512 469 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms