RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 EAF2Q96CJ1 260 aaPredicted RBP20.1■□□□□ 0.81
VPS54-201ENST00000272322 CCDC85AQ96PX6 553 aaPredicted RBP20.1■□□□□ 0.81
VPS54-201ENST00000272322 SGSM2O43147 1006 aa20.09■□□□□ 0.81
VPS54-201ENST00000272322 STK3Q13188 491 aa20.09■□□□□ 0.81
VPS54-201ENST00000272322 POLA2Q14181 598 aa20.09■□□□□ 0.81
VPS54-201ENST00000272322 FERMT3Q86UX7 667 aa20.09■□□□□ 0.81
VPS54-201ENST00000272322 PXDNQ92626 1479 aa20.09■□□□□ 0.81
VPS54-201ENST00000272322 RAB11FIP3O75154 756 aa20.08■□□□□ 0.81
VPS54-201ENST00000272322 EPHA10Q5JZY3 1008 aa20.08■□□□□ 0.81
VPS54-201ENST00000272322 GRM8O00222 908 aa20.08■□□□□ 0.81
VPS54-201ENST00000272322 AMOTQ4VCS5 1084 aa20.08■□□□□ 0.8
VPS54-201ENST00000272322 ARHGAP23Q9P227 1491 aa20.08■□□□□ 0.8
VPS54-201ENST00000272322 VPS37CA5D8V6 355 aaPredicted RBP20.07■□□□□ 0.8
VPS54-201ENST00000272322 SLFNL1Q499Z3 407 aa20.07■□□□□ 0.8
VPS54-201ENST00000272322 UBE3BQ7Z3V4 1068 aa20.07■□□□□ 0.8
VPS54-201ENST00000272322 FAM173BQ6P4H8 233 aa20.07■□□□□ 0.8
VPS54-201ENST00000272322 ZNF790Q6PG37 636 aa20.07■□□□□ 0.8
VPS54-201ENST00000272322 FSD1Q9BTV5 496 aa20.07■□□□□ 0.8
VPS54-201ENST00000272322 CEMIPQ8WUJ3 1361 aa20.07■□□□□ 0.8
VPS54-201ENST00000272322 ATF3P18847 181 aa20.07■□□□□ 0.8
VPS54-201ENST00000272322 FOSBP53539 338 aa20.07■□□□□ 0.8
VPS54-201ENST00000272322 DNAJC2Q99543 621 aaKnown RBP20.07■□□□□ 0.8
VPS54-201ENST00000272322 ECHDC1Q9NTX5 307 aa20.07■□□□□ 0.8
VPS54-201ENST00000272322 KAZALD1Q96I82 304 aa20.06■□□□□ 0.8
VPS54-201ENST00000272322 CNPY2Q9Y2B0 182 aa20.06■□□□□ 0.8
VPS54-201ENST00000272322 TAF6LQ9Y6J9 622 aa20.06■□□□□ 0.8
VPS54-201ENST00000272322 A0A0G2JS52 829 aa20.06■□□□□ 0.8
VPS54-201ENST00000272322 SASH1O94885 1247 aa20.06■□□□□ 0.8
VPS54-201ENST00000272322 HSPA4P34932 840 aa20.06■□□□□ 0.8
VPS54-201ENST00000272322 GLRX3O76003 335 aaKnown RBP20.06■□□□□ 0.8
VPS54-201ENST00000272322 TTC5Q8N0Z6 440 aa20.06■□□□□ 0.8
VPS54-201ENST00000272322 IGKV5-2P06315 115 aa20.05■□□□□ 0.8
VPS54-201ENST00000272322 LSG1Q9H089 658 aaKnown RBP20.05■□□□□ 0.8
VPS54-201ENST00000272322 RUFY3Q7L099 469 aa20.04■□□□□ 0.8
VPS54-201ENST00000272322 RGPD1P0DJD0 1748 aa20.04■□□□□ 0.8
VPS54-201ENST00000272322 SLIT1O75093 1534 aa20.04■□□□□ 0.8
VPS54-201ENST00000272322 NEXNQ0ZGT2 675 aa20.04■□□□□ 0.8
VPS54-201ENST00000272322 USP48Q86UV5 1035 aa20.04■□□□□ 0.8
VPS54-201ENST00000272322 NWD1Q149M9 1564 aa20.04■□□□□ 0.8
VPS54-201ENST00000272322 SMC3Q9UQE7 1217 aa20.04■□□□□ 0.8
VPS54-201ENST00000272322 TOPAZ1Q8N9V7 1692 aa20.04■□□□□ 0.8
VPS54-201ENST00000272322 DDX58O95786 925 aaKnown RBP20.03■□□□□ 0.8
VPS54-201ENST00000272322 TATP17735 454 aaPredicted RBP20.03■□□□□ 0.8
VPS54-201ENST00000272322 NMIQ13287 307 aaPredicted RBP20.03■□□□□ 0.8
VPS54-201ENST00000272322 NAP1L2Q9ULW6 460 aaPredicted RBP20.03■□□□□ 0.8
VPS54-201ENST00000272322 BRD1O95696 1058 aa20.03■□□□□ 0.8
VPS54-201ENST00000272322 NEUROD6Q96NK8 337 aa20.03■□□□□ 0.8
VPS54-201ENST00000272322 ANKARQ7Z5J8 1434 aa20.03■□□□□ 0.8
VPS54-201ENST00000272322 CCDC129Q6ZRS4 1044 aa20.02■□□□□ 0.8
VPS54-201ENST00000272322 LRRC2Q9BYS8 371 aa20.02■□□□□ 0.8
VPS54-201ENST00000272322 RAD50Q92878 1312 aa20.02■□□□□ 0.8
VPS54-201ENST00000272322 HSP90AB4PQ58FF6 505 aa20.02■□□□□ 0.8
VPS54-201ENST00000272322 LINS1Q8NG48 757 aa20.02■□□□□ 0.8
VPS54-201ENST00000272322 STRN4Q9NRL3 753 aa20.01■□□□□ 0.79
VPS54-201ENST00000272322 ERBB3P21860 1342 aa20.01■□□□□ 0.79
VPS54-201ENST00000272322 SEC62Q99442 399 aaKnown RBP20.01■□□□□ 0.79
VPS54-201ENST00000272322 DDX21Q9NR30 783 aaKnown RBP eCLIP20.01■□□□□ 0.79
VPS54-201ENST00000272322 PDRG1Q9NUG6 133 aa20.01■□□□□ 0.79
VPS54-201ENST00000272322 HYPKQ9NX55 129 aa20.01■□□□□ 0.79
VPS54-201ENST00000272322 KAT6BQ8WYB5 2073 aa20.01■□□□□ 0.79
VPS54-201ENST00000272322 A0A0D9SFI3 127 aa20.01■□□□□ 0.79
VPS54-201ENST00000272322 PTMSP20962 102 aa20.01■□□□□ 0.79
VPS54-201ENST00000272322 GPATCH3Q96I76 525 aa20.01■□□□□ 0.79
VPS54-201ENST00000272322 PDIA6Q15084 440 aa20■□□□□ 0.79
VPS54-201ENST00000272322 SYT1P21579 422 aa20■□□□□ 0.79
VPS54-201ENST00000272322 ANKRD13DQ6ZTN6 518 aa20■□□□□ 0.79
VPS54-201ENST00000272322 ZBTB3Q9H5J0 574 aa20■□□□□ 0.79
VPS54-201ENST00000272322 RBM8AQ9Y5S9 174 aaKnown RBP20■□□□□ 0.79
VPS54-201ENST00000272322 A0A087WZG4 1122 aa20■□□□□ 0.79
VPS54-201ENST00000272322 BABAM1Q9NWV8 329 aa20■□□□□ 0.79
VPS54-201ENST00000272322 MCM2P49736 904 aa19.99■□□□□ 0.79
VPS54-201ENST00000272322 CABP4P57796 275 aa19.99■□□□□ 0.79
VPS54-201ENST00000272322 DDX46Q7L014 1031 aaKnown RBP19.99■□□□□ 0.79
VPS54-201ENST00000272322 GJB2P29033 226 aa19.99■□□□□ 0.79
VPS54-201ENST00000272322 CYP27B1O15528 508 aa19.98■□□□□ 0.79
VPS54-201ENST00000272322 PTMAP06454 111 aaKnown RBP19.98■□□□□ 0.79
VPS54-201ENST00000272322 ANAPC15P60006 121 aa19.98■□□□□ 0.79
VPS54-201ENST00000272322 ZNF589Q86UQ0 364 aaPredicted RBP19.98■□□□□ 0.79
VPS54-201ENST00000272322 SLC52A2Q9HAB3 445 aa19.98■□□□□ 0.79
VPS54-201ENST00000272322 LIMCH1Q9UPQ0 1083 aa19.98■□□□□ 0.79
VPS54-201ENST00000272322 NALCNQ8IZF0 1738 aa19.98■□□□□ 0.79
VPS54-201ENST00000272322 TFCP2Q12800 502 aa19.98■□□□□ 0.79
VPS54-201ENST00000272322 CUL4AQ13619 759 aa19.98■□□□□ 0.79
VPS54-201ENST00000272322 C19orf44Q9H6X5 657 aa19.98■□□□□ 0.79
VPS54-201ENST00000272322 MSNP26038 577 aaKnown RBP19.97■□□□□ 0.79
VPS54-201ENST00000272322 NPHP3Q7Z494 1330 aa19.97■□□□□ 0.79
VPS54-201ENST00000272322 FER1L4A9Z1Z3 1794 aa19.97■□□□□ 0.79
VPS54-201ENST00000272322 DNM1Q05193 864 aaKnown RBP19.97■□□□□ 0.79
VPS54-201ENST00000272322 ARID3AQ99856 593 aa19.97■□□□□ 0.79
VPS54-201ENST00000272322 FMN2Q9NZ56 1722 aa19.97■□□□□ 0.79
VPS54-201ENST00000272322 NEURL1BA8MQ27 555 aa19.97■□□□□ 0.79
VPS54-201ENST00000272322 ZKSCAN1P17029 563 aaPredicted RBP19.97■□□□□ 0.79
VPS54-201ENST00000272322 RUFY2Q8WXA3 655 aa19.97■□□□□ 0.79
VPS54-201ENST00000272322 PHKG2P15735 406 aa19.96■□□□□ 0.79
VPS54-201ENST00000272322 CLCN1P35523 988 aa19.96■□□□□ 0.79
VPS54-201ENST00000272322 GCKRQ14397 625 aa19.96■□□□□ 0.79
VPS54-201ENST00000272322 CYP46A1Q9Y6A2 500 aa19.96■□□□□ 0.79
VPS54-201ENST00000272322 STX6O43752 255 aa19.96■□□□□ 0.79
VPS54-201ENST00000272322 A1BGP04217 495 aa19.96■□□□□ 0.79
VPS54-201ENST00000272322 LARP1Q6PKG0 1096 aaKnown RBP19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms