RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 DDX60Q8IY21 1712 aaKnown RBP13.63□□□□□ -0.23
MSH3-201ENST00000265081 RREB1Q92766 1687 aa13.63□□□□□ -0.23
MSH3-201ENST00000265081 NUCB2P80303 420 aa13.63□□□□□ -0.23
MSH3-201ENST00000265081 ERC1Q8IUD2 1116 aa13.63□□□□□ -0.23
MSH3-201ENST00000265081 LSG1Q9H089 658 aaKnown RBP13.63□□□□□ -0.23
MSH3-201ENST00000265081 ZDHHC9Q9Y397 364 aa13.63□□□□□ -0.23
MSH3-201ENST00000265081 COL14A1Q05707 1796 aaKnown RBP13.63□□□□□ -0.23
MSH3-201ENST00000265081 APBB1O00213 710 aa13.63□□□□□ -0.23
MSH3-201ENST00000265081 GRM8O00222 908 aa13.63□□□□□ -0.23
MSH3-201ENST00000265081 PALD1Q9ULE6 856 aa13.63□□□□□ -0.23
MSH3-201ENST00000265081 RFX7Q2KHR2 1363 aa13.62□□□□□ -0.23
MSH3-201ENST00000265081 SURF6O75683 361 aaKnown RBP13.62□□□□□ -0.23
MSH3-201ENST00000265081 RABL6Q3YEC7 729 aaPredicted RBP13.62□□□□□ -0.23
MSH3-201ENST00000265081 BRINP3Q76B58 766 aa13.62□□□□□ -0.23
MSH3-201ENST00000265081 COL16A1Q07092 1604 aaPredicted RBP13.62□□□□□ -0.23
MSH3-201ENST00000265081 WDR17Q8IZU2 1322 aa13.62□□□□□ -0.23
MSH3-201ENST00000265081 NEURL1BA8MQ27 555 aa13.62□□□□□ -0.23
MSH3-201ENST00000265081 SSFA2P28290 1259 aa13.62□□□□□ -0.23
MSH3-201ENST00000265081 CASP7P55210 303 aa13.62□□□□□ -0.23
MSH3-201ENST00000265081 RAPGEF4Q8WZA2 1011 aa13.62□□□□□ -0.23
MSH3-201ENST00000265081 SUCLG2Q96I99 432 aa13.62□□□□□ -0.23
MSH3-201ENST00000265081 METTL22Q9BUU2 404 aaPredicted RBP13.62□□□□□ -0.23
MSH3-201ENST00000265081 BAG4O95429 457 aaKnown RBP13.61□□□□□ -0.23
MSH3-201ENST00000265081 DDX58O95786 925 aaKnown RBP13.61□□□□□ -0.23
MSH3-201ENST00000265081 ANXA1P04083 346 aa13.61□□□□□ -0.23
MSH3-201ENST00000265081 TTC14Q96N46 770 aa13.61□□□□□ -0.23
MSH3-201ENST00000265081 RFX5P48382 616 aaPredicted RBP13.6□□□□□ -0.23
MSH3-201ENST00000265081 ZC3H6P61129 1189 aaKnown RBP13.6□□□□□ -0.23
MSH3-201ENST00000265081 GLRX3O76003 335 aaKnown RBP13.6□□□□□ -0.23
MSH3-201ENST00000265081 LARP1Q6PKG0 1096 aaKnown RBP13.6□□□□□ -0.23
MSH3-201ENST00000265081 SASH1O94885 1247 aa13.6□□□□□ -0.23
MSH3-201ENST00000265081 NUTM1Q86Y26 1132 aa13.6□□□□□ -0.23
MSH3-201ENST00000265081 IL1RAPL2Q9NP60 686 aa13.6□□□□□ -0.23
MSH3-201ENST00000265081 AHDC1Q5TGY3 1603 aaPredicted RBP13.6□□□□□ -0.23
MSH3-201ENST00000265081 GCKRQ14397 625 aa13.59□□□□□ -0.23
MSH3-201ENST00000265081 KLHL40Q2TBA0 621 aa13.59□□□□□ -0.23
MSH3-201ENST00000265081 CWF19L2Q2TBE0 894 aaKnown RBP13.59□□□□□ -0.23
MSH3-201ENST00000265081 DDX17Q92841 729 aaKnown RBP13.59□□□□□ -0.23
MSH3-201ENST00000265081 BRPF3Q9ULD4 1205 aa13.59□□□□□ -0.23
MSH3-201ENST00000265081 SNRPA1P09661 255 aaKnown RBP13.59□□□□□ -0.23
MSH3-201ENST00000265081 CNTROBQ8N137 903 aa13.59□□□□□ -0.23
MSH3-201ENST00000265081 ZNF496Q96IT1 587 aaPredicted RBP13.59□□□□□ -0.23
MSH3-201ENST00000265081 DISP2A7MBM2 1401 aa13.59□□□□□ -0.23
MSH3-201ENST00000265081 MCCP23508 829 aa13.59□□□□□ -0.23
MSH3-201ENST00000265081 NFATC2IPQ8NCF5 419 aa13.59□□□□□ -0.23
MSH3-201ENST00000265081 TMX3Q96JJ7 454 aa13.59□□□□□ -0.23
MSH3-201ENST00000265081 NRAPQ86VF7 1730 aa13.59□□□□□ -0.23
MSH3-201ENST00000265081 BICC1Q9H694 974 aaKnown RBP13.59□□□□□ -0.23
MSH3-201ENST00000265081 XRCC6P12956 609 aaKnown RBP eCLIP13.58□□□□□ -0.24
MSH3-201ENST00000265081 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.58□□□□□ -0.24
MSH3-201ENST00000265081 PCDH11XQ9BZA7 1347 aa13.58□□□□□ -0.24
MSH3-201ENST00000265081 PCDH11YQ9BZA8 1340 aa13.58□□□□□ -0.24
MSH3-201ENST00000265081 MED23Q9ULK4 1368 aa13.58□□□□□ -0.24
MSH3-201ENST00000265081 TICAM2Q86XR7 235 aa13.58□□□□□ -0.24
MSH3-201ENST00000265081 COPRSQ9NQ92 184 aa13.58□□□□□ -0.24
MSH3-201ENST00000265081 ECHDC1Q9NTX5 307 aa13.58□□□□□ -0.24
MSH3-201ENST00000265081 LMBRD1Q9NUN5 540 aa13.58□□□□□ -0.24
MSH3-201ENST00000265081 ARAP2Q8WZ64 1704 aa13.58□□□□□ -0.24
MSH3-201ENST00000265081 LAMA4Q16363 1823 aa13.57□□□□□ -0.24
MSH3-201ENST00000265081 ERVV-2B6SEH9 535 aa13.57□□□□□ -0.24
MSH3-201ENST00000265081 BRD1O95696 1058 aa13.57□□□□□ -0.24
MSH3-201ENST00000265081 ZGPATQ8N5A5 531 aaKnown RBP13.57□□□□□ -0.24
MSH3-201ENST00000265081 ZBTB7CA1YPR0 619 aa13.57□□□□□ -0.24
MSH3-201ENST00000265081 FMNL2Q96PY5 1086 aa13.57□□□□□ -0.24
MSH3-201ENST00000265081 RPAP1Q9BWH6 1393 aaPredicted RBP13.57□□□□□ -0.24
MSH3-201ENST00000265081 NLRP2Q9NX02 1062 aa13.57□□□□□ -0.24
MSH3-201ENST00000265081 LRP5O75197 1615 aa13.57□□□□□ -0.24
MSH3-201ENST00000265081 SNX14Q9Y5W7 946 aa13.56□□□□□ -0.24
MSH3-201ENST00000265081 GOLGA6L3A6NEY3 463 aa13.56□□□□□ -0.24
MSH3-201ENST00000265081 MRE11P49959 708 aa13.56□□□□□ -0.24
MSH3-201ENST00000265081 PKP1Q13835 747 aa13.56□□□□□ -0.24
MSH3-201ENST00000265081 TM6SF1Q9BZW5 370 aa13.56□□□□□ -0.24
MSH3-201ENST00000265081 SLC39A6Q13433 755 aa13.56□□□□□ -0.24
MSH3-201ENST00000265081 RILPL2Q969X0 211 aa13.56□□□□□ -0.24
MSH3-201ENST00000265081 EVI5LQ96CN4 794 aa13.56□□□□□ -0.24
MSH3-201ENST00000265081 ALDH8A1Q9H2A2 487 aaPredicted RBP13.56□□□□□ -0.24
MSH3-201ENST00000265081 C9orf78Q9NZ63 289 aaPredicted RBP13.56□□□□□ -0.24
MSH3-201ENST00000265081 ZNF831Q5JPB2 1677 aa13.56□□□□□ -0.24
MSH3-201ENST00000265081 TRIM6-TRIM34B2RNG4 842 aa13.55□□□□□ -0.24
MSH3-201ENST00000265081 XAGE3Q8WTP9 111 aa13.55□□□□□ -0.24
MSH3-201ENST00000265081 CLASRPQ8N2M8 674 aaKnown RBP13.55□□□□□ -0.24
MSH3-201ENST00000265081 PHLPP1O60346 1717 aa13.55□□□□□ -0.24
MSH3-201ENST00000265081 ZNF445P59923 1031 aa13.55□□□□□ -0.24
MSH3-201ENST00000265081 CARD10Q9BWT7 1032 aa13.55□□□□□ -0.24
MSH3-201ENST00000265081 PLBD2Q8NHP8 589 aa13.54□□□□□ -0.24
MSH3-201ENST00000265081 USP16Q9Y5T5 823 aa13.54□□□□□ -0.24
MSH3-201ENST00000265081 LAMB2P55268 1798 aa13.54□□□□□ -0.24
MSH3-201ENST00000265081 MYH3P11055 1940 aa13.54□□□□□ -0.24
MSH3-201ENST00000265081 NEK4P51957 841 aa13.54□□□□□ -0.24
MSH3-201ENST00000265081 EPHA10Q5JZY3 1008 aa13.54□□□□□ -0.24
MSH3-201ENST00000265081 ANO2Q9NQ90 1003 aa13.54□□□□□ -0.24
MSH3-201ENST00000265081 LMOD2Q6P5Q4 547 aa13.54□□□□□ -0.24
MSH3-201ENST00000265081 CABLES1Q8TDN4 633 aa13.54□□□□□ -0.24
MSH3-201ENST00000265081 EAF2Q96CJ1 260 aaPredicted RBP13.54□□□□□ -0.24
MSH3-201ENST00000265081 MYH15Q9Y2K3 1946 aa13.54□□□□□ -0.24
MSH3-201ENST00000265081 NECTIN1Q15223 517 aa13.54□□□□□ -0.24
MSH3-201ENST00000265081 COPS6Q7L5N1 327 aa13.54□□□□□ -0.24
MSH3-201ENST00000265081 FAM43AQ8N2R8 423 aa13.54□□□□□ -0.24
MSH3-201ENST00000265081 PA2G4Q9UQ80 394 aaKnown RBP13.54□□□□□ -0.24
MSH3-201ENST00000265081 ANKRD13DQ6ZTN6 518 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms