RNA–Protein interactions for RNA: ENST00000241393.3

CXCR4-201, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CXCR4, Length 1,682 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-201ENST00000241393 GAS2L2Q8NHY3 880 aa10.71□□□□□ -0.69
CXCR4-201ENST00000241393 PRKRIP1Q9H875 184 aaPredicted RBP10.71□□□□□ -0.69
CXCR4-201ENST00000241393 NUP155O75694 1391 aa10.71□□□□□ -0.7
CXCR4-201ENST00000241393 SAMD9LQ8IVG5 1584 aa10.7□□□□□ -0.7
CXCR4-201ENST00000241393 GTF2E1P29083 439 aaPredicted RBP10.7□□□□□ -0.7
CXCR4-201ENST00000241393 FAM69CQ0P6D2 419 aa10.7□□□□□ -0.7
CXCR4-201ENST00000241393 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.7□□□□□ -0.7
CXCR4-201ENST00000241393 C1orf216Q8TAB5 229 aa10.7□□□□□ -0.7
CXCR4-201ENST00000241393 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.7□□□□□ -0.7
CXCR4-201ENST00000241393 KIF7Q2M1P5 1343 aa10.7□□□□□ -0.7
CXCR4-201ENST00000241393 CHD1O14646 1710 aa10.7□□□□□ -0.7
CXCR4-201ENST00000241393 CDC42BPBQ9Y5S2 1711 aa10.7□□□□□ -0.7
CXCR4-201ENST00000241393 C11orf95C9JLR9 678 aaPredicted RBP10.69□□□□□ -0.7
CXCR4-201ENST00000241393 SSFA2P28290 1259 aa10.69□□□□□ -0.7
CXCR4-201ENST00000241393 CHMP3Q9Y3E7 222 aa10.69□□□□□ -0.7
CXCR4-201ENST00000241393 UPP2O95045 317 aa10.69□□□□□ -0.7
CXCR4-201ENST00000241393 NBPF15Q8N660 670 aa10.69□□□□□ -0.7
CXCR4-201ENST00000241393 NLRP3Q96P20 1036 aa10.69□□□□□ -0.7
CXCR4-201ENST00000241393 CCDC9Q9Y3X0 531 aaKnown RBP10.69□□□□□ -0.7
CXCR4-201ENST00000241393 ROCK2O75116 1388 aaKnown RBP10.69□□□□□ -0.7
CXCR4-201ENST00000241393 USP47Q96K76 1375 aa10.69□□□□□ -0.7
CXCR4-201ENST00000241393 ABCC2Q92887 1545 aa10.69□□□□□ -0.7
CXCR4-201ENST00000241393 KDM5CP41229 1560 aa10.69□□□□□ -0.7
CXCR4-201ENST00000241393 J3QL48 77 aa10.68□□□□□ -0.7
CXCR4-201ENST00000241393 GNEQ9Y223 722 aaKnown RBP10.68□□□□□ -0.7
CXCR4-201ENST00000241393 CARNS1A5YM72 827 aa10.67□□□□□ -0.7
CXCR4-201ENST00000241393 TMEM229AB2RXF0 380 aa10.67□□□□□ -0.7
CXCR4-201ENST00000241393 SCNN1DP51172 638 aa10.67□□□□□ -0.7
CXCR4-201ENST00000241393 HNRNPUQ00839 825 aaKnown RBP eCLIP10.67□□□□□ -0.7
CXCR4-201ENST00000241393 ERICH6BQ5W0A0 696 aa10.67□□□□□ -0.7
CXCR4-201ENST00000241393 Q6ZVU0 165 aa10.67□□□□□ -0.7
CXCR4-201ENST00000241393 VTI1AQ96AJ9 217 aa10.67□□□□□ -0.7
CXCR4-201ENST00000241393 SLC4A9Q96Q91 983 aa10.67□□□□□ -0.7
CXCR4-201ENST00000241393 UNC13BO14795 1591 aa10.67□□□□□ -0.7
CXCR4-201ENST00000241393 PLXNC1O60486 1568 aa10.67□□□□□ -0.7
CXCR4-201ENST00000241393 PRMT3O60678 531 aa10.66□□□□□ -0.7
CXCR4-201ENST00000241393 SMPD1P17405 629 aa10.66□□□□□ -0.7
CXCR4-201ENST00000241393 ADD1P35611 737 aaKnown RBP10.66□□□□□ -0.7
CXCR4-201ENST00000241393 PTGIRP43119 386 aa10.66□□□□□ -0.7
CXCR4-201ENST00000241393 TSEN2Q8NCE0 465 aaKnown RBP10.66□□□□□ -0.7
CXCR4-201ENST00000241393 ITPKCQ96DU7 683 aa10.66□□□□□ -0.7
CXCR4-201ENST00000241393 ETNK1Q9HBU6 452 aa10.66□□□□□ -0.7
CXCR4-201ENST00000241393 ARHGEF10LQ9HCE6 1279 aa10.66□□□□□ -0.7
CXCR4-201ENST00000241393 CXXC1Q9P0U4 656 aaPredicted RBP10.66□□□□□ -0.7
CXCR4-201ENST00000241393 PTCD1O75127 700 aaKnown RBP10.66□□□□□ -0.7
CXCR4-201ENST00000241393 IGFBP4P22692 258 aa10.66□□□□□ -0.7
CXCR4-201ENST00000241393 XAGE2Q96GT9 111 aa10.66□□□□□ -0.7
CXCR4-201ENST00000241393 SERTAD1Q9UHV2 236 aa10.66□□□□□ -0.7
CXCR4-201ENST00000241393 PDZRN3Q9UPQ7 1066 aa10.66□□□□□ -0.7
CXCR4-201ENST00000241393 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.65□□□□□ -0.7
CXCR4-201ENST00000241393 FAM135AQ9P2D6 1515 aa10.65□□□□□ -0.7
CXCR4-201ENST00000241393 UHRF1BP1LA0JNW5 1464 aa10.65□□□□□ -0.7
CXCR4-201ENST00000241393 FOXO3O43524 673 aa10.65□□□□□ -0.7
CXCR4-201ENST00000241393 TIMP2P16035 220 aa10.65□□□□□ -0.7
CXCR4-201ENST00000241393 HNRNPMP52272 730 aaKnown RBP eCLIP10.65□□□□□ -0.7
CXCR4-201ENST00000241393 CLN3Q13286 438 aa10.65□□□□□ -0.7
CXCR4-201ENST00000241393 ESYT1Q9BSJ8 1104 aa10.65□□□□□ -0.7
CXCR4-201ENST00000241393 TSEN34Q9BSV6 310 aaKnown RBP10.65□□□□□ -0.7
CXCR4-201ENST00000241393 SMTNP53814 917 aa10.64□□□□□ -0.71
CXCR4-201ENST00000241393 GZF1Q9H116 711 aaPredicted RBP10.64□□□□□ -0.71
CXCR4-201ENST00000241393 IVNS1ABPQ9Y6Y0 642 aa10.64□□□□□ -0.71
CXCR4-201ENST00000241393 ARHGAP5Q13017 1502 aa10.64□□□□□ -0.71
CXCR4-201ENST00000241393 DHX29Q7Z478 1369 aaKnown RBP10.64□□□□□ -0.71
CXCR4-201ENST00000241393 TTC37Q6PGP7 1564 aa10.64□□□□□ -0.71
CXCR4-201ENST00000241393 ZBED9Q6R2W3 1325 aa10.64□□□□□ -0.71
CXCR4-201ENST00000241393 SYCP2Q9BX26 1530 aa10.63□□□□□ -0.71
CXCR4-201ENST00000241393 A6NJY4 79 aa10.63□□□□□ -0.71
CXCR4-201ENST00000241393 WEE1P30291 646 aa10.63□□□□□ -0.71
CXCR4-201ENST00000241393 TLR1Q15399 786 aa10.63□□□□□ -0.71
CXCR4-201ENST00000241393 TMCO4Q5TGY1 634 aa10.63□□□□□ -0.71
CXCR4-201ENST00000241393 CNKSR1Q969H4 720 aa10.63□□□□□ -0.71
CXCR4-201ENST00000241393 PRIMPOLQ96LW4 560 aa10.63□□□□□ -0.71
CXCR4-201ENST00000241393 KLF16Q9BXK1 252 aaPredicted RBP10.63□□□□□ -0.71
CXCR4-201ENST00000241393 BCORL1Q5H9F3 1711 aa10.63□□□□□ -0.71
CXCR4-201ENST00000241393 MYO5CQ9NQX4 1742 aa10.63□□□□□ -0.71
CXCR4-201ENST00000241393 KTN1Q86UP2 1357 aaKnown RBP10.63□□□□□ -0.71
CXCR4-201ENST00000241393 A0A1W2PRU2 124 aa10.63□□□□□ -0.71
CXCR4-201ENST00000241393 CBLBQ13191 982 aa10.63□□□□□ -0.71
CXCR4-201ENST00000241393 ZFAND3Q9H8U3 227 aa10.63□□□□□ -0.71
CXCR4-201ENST00000241393 MRS2Q9HD23 443 aa10.63□□□□□ -0.71
CXCR4-201ENST00000241393 DUOX2Q9NRD8 1548 aa10.62□□□□□ -0.71
CXCR4-201ENST00000241393 ATP10AO60312 1499 aa10.62□□□□□ -0.71
CXCR4-201ENST00000241393 MAGI2Q86UL8 1455 aa10.62□□□□□ -0.71
CXCR4-201ENST00000241393 IQGAP3Q86VI3 1631 aa10.62□□□□□ -0.71
CXCR4-201ENST00000241393 MEN1O00255 615 aa10.62□□□□□ -0.71
CXCR4-201ENST00000241393 CAPN5O15484 640 aaPredicted RBP10.62□□□□□ -0.71
CXCR4-201ENST00000241393 MEIOBQ8N635 442 aa10.62□□□□□ -0.71
CXCR4-201ENST00000241393 COL26A1Q96A83 441 aa10.62□□□□□ -0.71
CXCR4-201ENST00000241393 RAB6BQ9NRW1 208 aa10.62□□□□□ -0.71
CXCR4-201ENST00000241393 CLASP1Q7Z460 1538 aa10.62□□□□□ -0.71
CXCR4-201ENST00000241393 CDK2AP1O14519 115 aa10.61□□□□□ -0.71
CXCR4-201ENST00000241393 RELBQ01201 579 aa10.61□□□□□ -0.71
CXCR4-201ENST00000241393 OCLNQ16625 522 aa10.61□□□□□ -0.71
CXCR4-201ENST00000241393 TNS4Q8IZW8 715 aa10.61□□□□□ -0.71
CXCR4-201ENST00000241393 SCG3Q8WXD2 468 aaKnown RBP10.61□□□□□ -0.71
CXCR4-201ENST00000241393 ERBINQ96RT1 1412 aa10.61□□□□□ -0.71
CXCR4-201ENST00000241393 ARAP3Q8WWN8 1544 aa10.61□□□□□ -0.71
CXCR4-201ENST00000241393 LAMC1P11047 1609 aa10.61□□□□□ -0.71
CXCR4-201ENST00000241393 CCDC144AA2RUR9 1427 aa10.6□□□□□ -0.71
CXCR4-201ENST00000241393 PLCH2O75038 1416 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms