RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 TEFQ10587 303 aa16.75■□□□□ 0.27
SLIRP-201ENST00000238688 NLGN1Q8N2Q7 840 aa16.75■□□□□ 0.27
SLIRP-201ENST00000238688 MRPL50Q8N5N7 158 aaKnown RBP16.75■□□□□ 0.27
SLIRP-201ENST00000238688 CYP19A1P11511 503 aaPredicted RBP16.74■□□□□ 0.27
SLIRP-201ENST00000238688 TRIM27P14373 513 aa16.74■□□□□ 0.27
SLIRP-201ENST00000238688 C8orf58Q8NAV2 365 aa16.74■□□□□ 0.27
SLIRP-201ENST00000238688 SRP68Q9UHB9 627 aaKnown RBP16.74■□□□□ 0.27
SLIRP-201ENST00000238688 C10orf71Q711Q0 1435 aa16.73■□□□□ 0.27
SLIRP-201ENST00000238688 GRIN3BO60391 1043 aa16.73■□□□□ 0.27
SLIRP-201ENST00000238688 RFC4P35249 363 aa16.73■□□□□ 0.27
SLIRP-201ENST00000238688 PXDNLA1KZ92 1463 aa16.73■□□□□ 0.27
SLIRP-201ENST00000238688 USP42Q9H9J4 1324 aaKnown RBP16.72■□□□□ 0.27
SLIRP-201ENST00000238688 CCDC30Q5VVM6 783 aa16.72■□□□□ 0.27
SLIRP-201ENST00000238688 TSPYL6Q8N831 410 aa16.72■□□□□ 0.27
SLIRP-201ENST00000238688 CCDC87Q9NVE4 849 aa16.72■□□□□ 0.27
SLIRP-201ENST00000238688 NOB1Q9ULX3 412 aaKnown RBP16.72■□□□□ 0.27
SLIRP-201ENST00000238688 AFDNP55196 1824 aaKnown RBP16.72■□□□□ 0.27
SLIRP-201ENST00000238688 ABCC4O15439 1325 aa16.71■□□□□ 0.27
SLIRP-201ENST00000238688 KDM2BQ8NHM5 1336 aa16.71■□□□□ 0.27
SLIRP-201ENST00000238688 BCL2L13Q9BXK5 485 aa16.71■□□□□ 0.27
SLIRP-201ENST00000238688 STK31Q9BXU1 1019 aa16.71■□□□□ 0.27
SLIRP-201ENST00000238688 WWC3Q9ULE0 1092 aa16.71■□□□□ 0.27
SLIRP-201ENST00000238688 DDR1Q08345 913 aa16.7■□□□□ 0.26
SLIRP-201ENST00000238688 VSIG10Q8N0Z9 540 aa16.7■□□□□ 0.26
SLIRP-201ENST00000238688 PANK1Q8TE04 598 aa16.7■□□□□ 0.26
SLIRP-201ENST00000238688 ZBTB1Q9Y2K1 713 aa16.7■□□□□ 0.26
SLIRP-201ENST00000238688 COG6Q9Y2V7 657 aa16.7■□□□□ 0.26
SLIRP-201ENST00000238688 ZNF496Q96IT1 587 aaPredicted RBP16.69■□□□□ 0.26
SLIRP-201ENST00000238688 NRXN2Q9P2S2 1712 aa16.68■□□□□ 0.26
SLIRP-201ENST00000238688 KCNQ3O43525 872 aa16.68■□□□□ 0.26
SLIRP-201ENST00000238688 TM4SF1P30408 202 aa16.68■□□□□ 0.26
SLIRP-201ENST00000238688 ZNF790Q6PG37 636 aa16.68■□□□□ 0.26
SLIRP-201ENST00000238688 BCL2L12Q9HB09 334 aa16.68■□□□□ 0.26
SLIRP-201ENST00000238688 HEG1Q9ULI3 1381 aa16.67■□□□□ 0.26
SLIRP-201ENST00000238688 A0A0G2JLW4 131 aa16.67■□□□□ 0.26
SLIRP-201ENST00000238688 RLBP1P12271 317 aa16.67■□□□□ 0.26
SLIRP-201ENST00000238688 KCNA3P22001 575 aa16.67■□□□□ 0.26
SLIRP-201ENST00000238688 TGFB2P61812 414 aa16.67■□□□□ 0.26
SLIRP-201ENST00000238688 USPL1Q5W0Q7 1092 aa16.67■□□□□ 0.26
SLIRP-201ENST00000238688 ARFGEF1Q9Y6D6 1849 aa16.67■□□□□ 0.26
SLIRP-201ENST00000238688 ADCY9O60503 1353 aa16.66■□□□□ 0.26
SLIRP-201ENST00000238688 COL15A1P39059 1388 aa16.66■□□□□ 0.26
SLIRP-201ENST00000238688 BTBD11A6QL63 1104 aa16.66■□□□□ 0.26
SLIRP-201ENST00000238688 TCERG1O14776 1098 aaKnown RBP16.66■□□□□ 0.26
SLIRP-201ENST00000238688 RWDD1Q9H446 243 aaPredicted RBP16.66■□□□□ 0.26
SLIRP-201ENST00000238688 NARFQ9UHQ1 456 aa16.66■□□□□ 0.26
SLIRP-201ENST00000238688 PARP3Q9Y6F1 533 aa16.66■□□□□ 0.26
SLIRP-201ENST00000238688 POLRMTO00411 1230 aaKnown RBP16.65■□□□□ 0.26
SLIRP-201ENST00000238688 DPEP1P16444 411 aa16.65■□□□□ 0.26
SLIRP-201ENST00000238688 EIF5P55010 431 aaKnown RBP16.65■□□□□ 0.26
SLIRP-201ENST00000238688 EIF4A1P60842 406 aaKnown RBP16.65■□□□□ 0.26
SLIRP-201ENST00000238688 INTS3Q68E01 1043 aaKnown RBP16.65■□□□□ 0.26
SLIRP-201ENST00000238688 ITPRIPQ8IWB1 547 aa16.65■□□□□ 0.26
SLIRP-201ENST00000238688 HDAC1Q13547 482 aaPredicted RBP16.64■□□□□ 0.25
SLIRP-201ENST00000238688 TTC5Q8N0Z6 440 aa16.64■□□□□ 0.25
SLIRP-201ENST00000238688 ZBTB40Q9NUA8 1239 aa16.64■□□□□ 0.25
SLIRP-201ENST00000238688 LAMB4A4D0S4 1761 aa16.64■□□□□ 0.25
SLIRP-201ENST00000238688 IBTKQ9P2D0 1353 aaPredicted RBP16.64■□□□□ 0.25
SLIRP-201ENST00000238688 ELL2O00472 640 aaPredicted RBP16.63■□□□□ 0.25
SLIRP-201ENST00000238688 CCT4P50991 539 aaKnown RBP16.63■□□□□ 0.25
SLIRP-201ENST00000238688 NFIXQ14938 502 aa16.63■□□□□ 0.25
SLIRP-201ENST00000238688 TMEM57Q8N5G2 664 aa16.63■□□□□ 0.25
SLIRP-201ENST00000238688 SCN7AQ01118 1682 aa16.62■□□□□ 0.25
SLIRP-201ENST00000238688 ATP10DQ9P241 1426 aa16.62■□□□□ 0.25
SLIRP-201ENST00000238688 ZPR1O75312 459 aa16.62■□□□□ 0.25
SLIRP-201ENST00000238688 SLC4A2P04920 1241 aa16.62■□□□□ 0.25
SLIRP-201ENST00000238688 ANKRD31Q8N7Z5 1873 aa16.61■□□□□ 0.25
SLIRP-201ENST00000238688 STARD3NLO95772 234 aa16.61■□□□□ 0.25
SLIRP-201ENST00000238688 HDGFL1Q5TGJ6 251 aa16.61■□□□□ 0.25
SLIRP-201ENST00000238688 FMNL2Q96PY5 1086 aa16.61■□□□□ 0.25
SLIRP-201ENST00000238688 DLEC1Q9Y238 1755 aa16.61■□□□□ 0.25
SLIRP-201ENST00000238688 SBF1O95248 1867 aa16.61■□□□□ 0.25
SLIRP-201ENST00000238688 BCORQ6W2J9 1755 aa16.6■□□□□ 0.25
SLIRP-201ENST00000238688 PRAMEF22A3QJZ6 481 aa16.6■□□□□ 0.25
SLIRP-201ENST00000238688 A1BGP04217 495 aa16.6■□□□□ 0.25
SLIRP-201ENST00000238688 TEX13AQ9BXU3 409 aaPredicted RBP16.6■□□□□ 0.25
SLIRP-201ENST00000238688 MIS18AQ9NYP9 233 aa16.6■□□□□ 0.25
SLIRP-201ENST00000238688 BCS1LQ9Y276 419 aa16.6■□□□□ 0.25
SLIRP-201ENST00000238688 USP16Q9Y5T5 823 aa16.6■□□□□ 0.25
SLIRP-201ENST00000238688 DBF4Q9UBU7 674 aaPredicted RBP16.59■□□□□ 0.25
SLIRP-201ENST00000238688 ERBB4Q15303 1308 aa16.59■□□□□ 0.25
SLIRP-201ENST00000238688 ZBTB7BO15156 539 aaPredicted RBP16.58■□□□□ 0.24
SLIRP-201ENST00000238688 GIGYF1O75420 1035 aaPredicted RBP16.58■□□□□ 0.24
SLIRP-201ENST00000238688 CHRNA5P30532 468 aa16.58■□□□□ 0.24
SLIRP-201ENST00000238688 IL6STP40189 918 aaPredicted RBP16.58■□□□□ 0.24
SLIRP-201ENST00000238688 C1QTNF8P60827 252 aa16.58■□□□□ 0.24
SLIRP-201ENST00000238688 FLIIQ13045 1269 aa16.58■□□□□ 0.24
SLIRP-201ENST00000238688 KRT24Q2M2I5 525 aa16.58■□□□□ 0.24
SLIRP-201ENST00000238688 CARMIL3Q8ND23 1372 aa16.57■□□□□ 0.24
SLIRP-201ENST00000238688 SERPINB2P05120 415 aa16.57■□□□□ 0.24
SLIRP-201ENST00000238688 TBC1D2BQ9UPU7 963 aa16.57■□□□□ 0.24
SLIRP-201ENST00000238688 TBC1D9BQ66K14 1250 aa16.56■□□□□ 0.24
SLIRP-201ENST00000238688 HYPKQ9NX55 129 aa16.56■□□□□ 0.24
SLIRP-201ENST00000238688 PIM2Q9P1W9 311 aa16.56■□□□□ 0.24
SLIRP-201ENST00000238688 HDAC5Q9UQL6 1122 aa16.56■□□□□ 0.24
SLIRP-201ENST00000238688 A0A087WZG4 1122 aa16.55■□□□□ 0.24
SLIRP-201ENST00000238688 CAMTA2O94983 1202 aa16.55■□□□□ 0.24
SLIRP-201ENST00000238688 PIP4K2AP48426 406 aaPredicted RBP16.55■□□□□ 0.24
SLIRP-201ENST00000238688 TNNQ9UQP3 1299 aa16.55■□□□□ 0.24
SLIRP-201ENST00000238688 PCDHB15Q9Y5E8 787 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms