RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 ERC1Q8IUD2 1116 aa21.41■■□□□ 1.02
VRK1-201ENST00000216639 VSIG10Q8N0Z9 540 aa21.41■■□□□ 1.02
VRK1-201ENST00000216639 SUCLG2Q96I99 432 aa21.41■■□□□ 1.02
VRK1-201ENST00000216639 WNK3Q9BYP7 1800 aa21.4■■□□□ 1.02
VRK1-201ENST00000216639 ARFGEF2Q9Y6D5 1785 aa21.39■■□□□ 1.01
VRK1-201ENST00000216639 NBPF26B4DH59 902 aa21.39■■□□□ 1.01
VRK1-201ENST00000216639 NBPF14Q5TI25 921 aa21.39■■□□□ 1.01
VRK1-201ENST00000216639 NBPF10Q6P3W6 841 aaKnown RBP21.39■■□□□ 1.01
VRK1-201ENST00000216639 NBPF15Q8N660 670 aa21.39■■□□□ 1.01
VRK1-201ENST00000216639 PIGBQ92521 554 aa21.39■■□□□ 1.01
VRK1-201ENST00000216639 BICC1Q9H694 974 aaKnown RBP21.38■■□□□ 1.01
VRK1-201ENST00000216639 IL1RAPL2Q9NP60 686 aa21.38■■□□□ 1.01
VRK1-201ENST00000216639 SPATA31A1Q5TZJ5 1347 aa21.37■■□□□ 1.01
VRK1-201ENST00000216639 NRAPQ86VF7 1730 aa21.37■■□□□ 1.01
VRK1-201ENST00000216639 NUTM2BA6NNL0 878 aaPredicted RBP21.37■■□□□ 1.01
VRK1-201ENST00000216639 NUTM2EB1AL46 878 aaPredicted RBP21.37■■□□□ 1.01
VRK1-201ENST00000216639 NUTM2AQ8IVF1 878 aaPredicted RBP21.37■■□□□ 1.01
VRK1-201ENST00000216639 A1BGP04217 495 aa21.36■■□□□ 1.01
VRK1-201ENST00000216639 KAZALD1Q96I82 304 aa21.36■■□□□ 1.01
VRK1-201ENST00000216639 AFDNP55196 1824 aaKnown RBP21.36■■□□□ 1.01
VRK1-201ENST00000216639 COL15A1P39059 1388 aa21.36■■□□□ 1.01
VRK1-201ENST00000216639 CLASRPQ8N2M8 674 aaKnown RBP21.35■■□□□ 1.01
VRK1-201ENST00000216639 ATG3Q9NT62 314 aa21.35■■□□□ 1.01
VRK1-201ENST00000216639 ASAP1Q9ULH1 1129 aa21.35■■□□□ 1.01
VRK1-201ENST00000216639 ITGB4P16144 1822 aa21.35■■□□□ 1.01
VRK1-201ENST00000216639 BCL9O00512 1426 aa21.35■■□□□ 1.01
VRK1-201ENST00000216639 STARD3NLO95772 234 aa21.35■■□□□ 1.01
VRK1-201ENST00000216639 NWD2Q9ULI1 1742 aa21.34■■□□□ 1.01
VRK1-201ENST00000216639 UBAP1LF5GYI3 381 aa21.34■■□□□ 1.01
VRK1-201ENST00000216639 REC8O95072 547 aa21.34■■□□□ 1.01
VRK1-201ENST00000216639 G3BP1Q13283 466 aaKnown RBP eCLIP21.34■■□□□ 1.01
VRK1-201ENST00000216639 A0A087WZG4 1122 aa21.33■■□□□ 1.01
VRK1-201ENST00000216639 DDB1Q16531 1140 aa21.33■■□□□ 1.01
VRK1-201ENST00000216639 NUTM1Q86Y26 1132 aa21.33■■□□□ 1.01
VRK1-201ENST00000216639 RBM42Q9BTD8 480 aaKnown RBP21.33■■□□□ 1.01
VRK1-201ENST00000216639 TBC1D2Q9BYX2 928 aa21.33■■□□□ 1.01
VRK1-201ENST00000216639 TRIM6-TRIM34B2RNG4 842 aa21.32■■□□□ 1
VRK1-201ENST00000216639 ATP5J2-PTCD1G3V325 749 aa21.32■■□□□ 1
VRK1-201ENST00000216639 TSHZ3Q63HK5 1081 aa21.32■■□□□ 1
VRK1-201ENST00000216639 TTLL7Q6ZT98 887 aa21.32■■□□□ 1
VRK1-201ENST00000216639 UBE3BQ7Z3V4 1068 aa21.32■■□□□ 1
VRK1-201ENST00000216639 GPATCH3Q96I76 525 aa21.32■■□□□ 1
VRK1-201ENST00000216639 CWC25Q9NXE8 425 aaPredicted RBP21.32■■□□□ 1
VRK1-201ENST00000216639 TTC41PQ6P2S7 1318 aa21.32■■□□□ 1
VRK1-201ENST00000216639 NUP188Q5SRE5 1749 aa21.31■■□□□ 1
VRK1-201ENST00000216639 ERC2O15083 957 aa21.31■■□□□ 1
VRK1-201ENST00000216639 HSCBQ8IWL3 235 aa21.31■■□□□ 1
VRK1-201ENST00000216639 DNAJC10Q8IXB1 793 aa21.31■■□□□ 1
VRK1-201ENST00000216639 RILPL2Q969X0 211 aa21.31■■□□□ 1
VRK1-201ENST00000216639 SYTL4Q96C24 671 aaPredicted RBP21.31■■□□□ 1
VRK1-201ENST00000216639 SPATA31A5Q5VU36 1347 aa21.31■■□□□ 1
VRK1-201ENST00000216639 SPATA31A7Q8IWB4 1347 aa21.31■■□□□ 1
VRK1-201ENST00000216639 SLIT2O94813 1529 aa21.31■■□□□ 1
VRK1-201ENST00000216639 PA2G4Q9UQ80 394 aaKnown RBP21.3■■□□□ 1
VRK1-201ENST00000216639 CCDC9Q9Y3X0 531 aaKnown RBP21.3■■□□□ 1
VRK1-201ENST00000216639 USP42Q9H9J4 1324 aaKnown RBP21.3■■□□□ 1
VRK1-201ENST00000216639 TUBGCP6Q96RT7 1819 aa21.3■■□□□ 1
VRK1-201ENST00000216639 IFIT2P09913 472 aaKnown RBP21.29■■□□□ 1
VRK1-201ENST00000216639 KIF6Q6ZMV9 814 aa21.29■■□□□ 1
VRK1-201ENST00000216639 BARGINQ6ZT62 677 aa21.29■■□□□ 1
VRK1-201ENST00000216639 CCDC191Q8NCU4 936 aa21.29■■□□□ 1
VRK1-201ENST00000216639 ZBTB3Q9H5J0 574 aa21.29■■□□□ 1
VRK1-201ENST00000216639 RABL6Q3YEC7 729 aaPredicted RBP21.29■■□□□ 1
VRK1-201ENST00000216639 SNX21Q969T3 373 aa21.29■■□□□ 1
VRK1-201ENST00000216639 USP26Q9BXU7 913 aa21.29■■□□□ 1
VRK1-201ENST00000216639 H7C1W4 665 aa21.28■■□□□ 1
VRK1-201ENST00000216639 NBR1Q14596 966 aa21.28■■□□□ 1
VRK1-201ENST00000216639 GLRX3O76003 335 aaKnown RBP21.27■■□□□ 1
VRK1-201ENST00000216639 EPHA10Q5JZY3 1008 aa21.27■■□□□ 1
VRK1-201ENST00000216639 PI4K2BQ8TCG2 481 aa21.27■■□□□ 1
VRK1-201ENST00000216639 COPRSQ9NQ92 184 aa21.27■■□□□ 1
VRK1-201ENST00000216639 JCADQ9P266 1359 aa21.27■■□□□ 1
VRK1-201ENST00000216639 PRIM1P49642 420 aaKnown RBP21.26■□□□□ 0.99
VRK1-201ENST00000216639 CASP7P55210 303 aa21.26■□□□□ 0.99
VRK1-201ENST00000216639 CNTROBQ8N137 903 aa21.26■□□□□ 0.99
VRK1-201ENST00000216639 ZNF330Q9Y3S2 320 aaPredicted RBP21.26■□□□□ 0.99
VRK1-201ENST00000216639 DOT1LQ8TEK3 1739 aa21.26■□□□□ 0.99
VRK1-201ENST00000216639 RTL5Q5HYW3 569 aaPredicted RBP21.26■□□□□ 0.99
VRK1-201ENST00000216639 ECHDC1Q9NTX5 307 aa21.26■□□□□ 0.99
VRK1-201ENST00000216639 CHMLP26374 656 aa21.25■□□□□ 0.99
VRK1-201ENST00000216639 AACSQ86V21 672 aa21.25■□□□□ 0.99
VRK1-201ENST00000216639 UNC5CLQ8IV45 518 aa21.25■□□□□ 0.99
VRK1-201ENST00000216639 KIF2CQ99661 725 aa21.25■□□□□ 0.99
VRK1-201ENST00000216639 SASH1O94885 1247 aa21.24■□□□□ 0.99
VRK1-201ENST00000216639 TCIRG1Q13488 830 aa21.24■□□□□ 0.99
VRK1-201ENST00000216639 JARID2Q92833 1246 aaPredicted RBP21.24■□□□□ 0.99
VRK1-201ENST00000216639 ESYT1Q9BSJ8 1104 aa21.24■□□□□ 0.99
VRK1-201ENST00000216639 CYP19A1P11511 503 aaPredicted RBP21.24■□□□□ 0.99
VRK1-201ENST00000216639 RABEP1Q15276 862 aa21.24■□□□□ 0.99
VRK1-201ENST00000216639 SIL1Q9H173 461 aa21.24■□□□□ 0.99
VRK1-201ENST00000216639 ISCA1Q9BUE6 129 aa21.23■□□□□ 0.99
VRK1-201ENST00000216639 RFX5P48382 616 aaPredicted RBP21.22■□□□□ 0.99
VRK1-201ENST00000216639 TRIM28Q13263 835 aaKnown RBP21.22■□□□□ 0.99
VRK1-201ENST00000216639 MCCP23508 829 aa21.21■□□□□ 0.99
VRK1-201ENST00000216639 HSP90AB3PQ58FF7 597 aa21.21■□□□□ 0.99
VRK1-201ENST00000216639 LMBR1LQ6UX01 489 aa21.21■□□□□ 0.99
VRK1-201ENST00000216639 MARCH10Q8NA82 808 aaPredicted RBP21.21■□□□□ 0.99
VRK1-201ENST00000216639 NGLY1Q96IV0 654 aa21.21■□□□□ 0.99
VRK1-201ENST00000216639 MAP3K15Q6ZN16 1313 aa21.21■□□□□ 0.99
VRK1-201ENST00000216639 TJP1Q07157 1748 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms