RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 HSPA6P17066 643 aa29.23■■■□□ 2.27
VTI1B-201ENST00000216456 RIPK4P57078 832 aa29.23■■■□□ 2.27
VTI1B-201ENST00000216456 NBPF5PQ86XG9 351 aaPredicted RBP29.23■■■□□ 2.27
VTI1B-201ENST00000216456 PNISRQ8TF01 805 aaKnown RBP29.23■■■□□ 2.27
VTI1B-201ENST00000216456 LAMB4A4D0S4 1761 aa29.23■■■□□ 2.27
VTI1B-201ENST00000216456 CLEC4GQ6UXB4 293 aa29.22■■■□□ 2.27
VTI1B-201ENST00000216456 NIP7Q9Y221 180 aaKnown RBP eCLIP29.22■■■□□ 2.27
VTI1B-201ENST00000216456 MYBBP1AQ9BQG0 1328 aaKnown RBP29.21■■■□□ 2.27
VTI1B-201ENST00000216456 MYL6BP14649 208 aa29.21■■■□□ 2.27
VTI1B-201ENST00000216456 ST5P78524 1137 aa29.21■■■□□ 2.27
VTI1B-201ENST00000216456 TTLL7Q6ZT98 887 aa29.21■■■□□ 2.27
VTI1B-201ENST00000216456 SRGNP10124 158 aa29.2■■■□□ 2.26
VTI1B-201ENST00000216456 PNNQ9H307 717 aaKnown RBP29.2■■■□□ 2.26
VTI1B-201ENST00000216456 RRAGCQ9HB90 399 aa29.2■■■□□ 2.26
VTI1B-201ENST00000216456 LMNB1P20700 586 aa29.19■■■□□ 2.26
VTI1B-201ENST00000216456 TMPOP42166 694 aaKnown RBP29.19■■■□□ 2.26
VTI1B-201ENST00000216456 ZNF652Q9Y2D9 606 aa29.19■■■□□ 2.26
VTI1B-201ENST00000216456 TOMM70O94826 608 aa29.18■■■□□ 2.26
VTI1B-201ENST00000216456 NEUROD2Q15784 382 aa29.18■■■□□ 2.26
VTI1B-201ENST00000216456 TSPYL4Q9UJ04 414 aa29.18■■■□□ 2.26
VTI1B-201ENST00000216456 SLX4Q8IY92 1834 aa29.17■■■□□ 2.26
VTI1B-201ENST00000216456 PRPF40BQ6NWY9 871 aaKnown RBP29.17■■■□□ 2.26
VTI1B-201ENST00000216456 CACNA1SQ13698 1873 aa29.15■■■□□ 2.26
VTI1B-201ENST00000216456 STYK1Q6J9G0 422 aa29.15■■■□□ 2.26
VTI1B-201ENST00000216456 KDM2BQ8NHM5 1336 aa29.15■■■□□ 2.26
VTI1B-201ENST00000216456 ANXA1P04083 346 aa29.14■■■□□ 2.26
VTI1B-201ENST00000216456 OLFM4Q6UX06 510 aa29.14■■■□□ 2.26
VTI1B-201ENST00000216456 MASTLQ96GX5 879 aa29.14■■■□□ 2.26
VTI1B-201ENST00000216456 ZBTB3Q9H5J0 574 aa29.14■■■□□ 2.26
VTI1B-201ENST00000216456 PDZRN3Q9UPQ7 1066 aa29.14■■■□□ 2.26
VTI1B-201ENST00000216456 CCDC88AQ3V6T2 1871 aa29.13■■■□□ 2.25
VTI1B-201ENST00000216456 NUTM1Q86Y26 1132 aa29.13■■■□□ 2.25
VTI1B-201ENST00000216456 EIF2S2P20042 333 aaKnown RBP29.12■■■□□ 2.25
VTI1B-201ENST00000216456 GPTP24298 496 aa29.12■■■□□ 2.25
VTI1B-201ENST00000216456 KRT24Q2M2I5 525 aa29.12■■■□□ 2.25
VTI1B-201ENST00000216456 PROSER3Q2NL68 480 aa29.12■■■□□ 2.25
VTI1B-201ENST00000216456 TPTE2Q6XPS3 522 aa29.12■■■□□ 2.25
VTI1B-201ENST00000216456 CNKSR1Q969H4 720 aa29.12■■■□□ 2.25
VTI1B-201ENST00000216456 MAP3K15Q6ZN16 1313 aa29.12■■■□□ 2.25
VTI1B-201ENST00000216456 ABCC12Q96J65 1359 aa29.12■■■□□ 2.25
VTI1B-201ENST00000216456 NECTIN2Q92692 538 aa29.11■■■□□ 2.25
VTI1B-201ENST00000216456 ADAMTS8Q9UP79 889 aa29.11■■■□□ 2.25
VTI1B-201ENST00000216456 TIAM2Q8IVF5 1701 aa29.11■■■□□ 2.25
VTI1B-201ENST00000216456 TNRC6CQ9HCJ0 1690 aaKnown RBP29.1■■■□□ 2.25
VTI1B-201ENST00000216456 PDIA6Q15084 440 aa29.1■■■□□ 2.25
VTI1B-201ENST00000216456 TRIM35Q9UPQ4 493 aa29.1■■■□□ 2.25
VTI1B-201ENST00000216456 UBN2Q6ZU65 1347 aa29.1■■■□□ 2.25
VTI1B-201ENST00000216456 FER1L6Q2WGJ9 1857 aa29.1■■■□□ 2.25
VTI1B-201ENST00000216456 KLRG2A4D1S0 409 aaPredicted RBP29.09■■■□□ 2.25
VTI1B-201ENST00000216456 LRP10Q7Z4F1 713 aa29.09■■■□□ 2.25
VTI1B-201ENST00000216456 C16orf71Q8IYS4 520 aaPredicted RBP29.09■■■□□ 2.25
VTI1B-201ENST00000216456 GLTPD2A6NH11 291 aa29.08■■■□□ 2.25
VTI1B-201ENST00000216456 ERVV-1B6SEH8 477 aa29.08■■■□□ 2.25
VTI1B-201ENST00000216456 HTRA3P83110 453 aa29.08■■■□□ 2.25
VTI1B-201ENST00000216456 KIF6Q6ZMV9 814 aa29.08■■■□□ 2.25
VTI1B-201ENST00000216456 C7orf43Q8WVR3 580 aa29.08■■■□□ 2.25
VTI1B-201ENST00000216456 PRKRIP1Q9H875 184 aaPredicted RBP29.08■■■□□ 2.25
VTI1B-201ENST00000216456 RGL2O15211 777 aa29.07■■■□□ 2.24
VTI1B-201ENST00000216456 NPR1P16066 1061 aa29.07■■■□□ 2.24
VTI1B-201ENST00000216456 WDR43Q15061 677 aaKnown RBP eCLIP29.07■■■□□ 2.24
VTI1B-201ENST00000216456 ERFEQ4G0M1 354 aa29.07■■■□□ 2.24
VTI1B-201ENST00000216456 SLC51AQ86UW1 340 aa29.07■■■□□ 2.24
VTI1B-201ENST00000216456 RBM46Q8TBY0 533 aaKnown RBP29.07■■■□□ 2.24
VTI1B-201ENST00000216456 TAOK3Q9H2K8 898 aa29.07■■■□□ 2.24
VTI1B-201ENST00000216456 NUP98P52948 1817 aa29.06■■■□□ 2.24
VTI1B-201ENST00000216456 GTF2E1P29083 439 aaPredicted RBP29.06■■■□□ 2.24
VTI1B-201ENST00000216456 SUSD4Q5VX71 490 aa29.06■■■□□ 2.24
VTI1B-201ENST00000216456 RUNDC1Q96C34 613 aa29.06■■■□□ 2.24
VTI1B-201ENST00000216456 LAS1LQ9Y4W2 734 aaKnown RBP29.06■■■□□ 2.24
VTI1B-201ENST00000216456 ZC3H4Q9UPT8 1303 aaKnown RBP29.05■■■□□ 2.24
VTI1B-201ENST00000216456 POTECB2RU33 542 aa29.04■■■□□ 2.24
VTI1B-201ENST00000216456 LMOD3Q0VAK6 560 aa29.04■■■□□ 2.24
VTI1B-201ENST00000216456 ARFGEF2Q9Y6D5 1785 aa29.03■■■□□ 2.24
VTI1B-201ENST00000216456 LTBP3Q9NS15 1303 aa29.02■■■□□ 2.24
VTI1B-201ENST00000216456 C3orf67Q6ZVT6 689 aa29.02■■■□□ 2.24
VTI1B-201ENST00000216456 ZNF34Q8IZ26 560 aa29.02■■■□□ 2.24
VTI1B-201ENST00000216456 CHL1O00533 1208 aa29.01■■■□□ 2.23
VTI1B-201ENST00000216456 ERBB4Q15303 1308 aa29■■■□□ 2.23
VTI1B-201ENST00000216456 APLP1P51693 650 aa29■■■□□ 2.23
VTI1B-201ENST00000216456 GIGYF2Q6Y7W6 1299 aaKnown RBP29■■■□□ 2.23
VTI1B-201ENST00000216456 ZNF428Q96B54 188 aa29■■■□□ 2.23
VTI1B-201ENST00000216456 NTSR2O95665 410 aa28.99■■■□□ 2.23
VTI1B-201ENST00000216456 AIMP1Q12904 312 aaKnown RBP28.99■■■□□ 2.23
VTI1B-201ENST00000216456 CCDC93Q567U6 631 aa28.99■■■□□ 2.23
VTI1B-201ENST00000216456 NYXQ9GZU5 481 aa28.99■■■□□ 2.23
VTI1B-201ENST00000216456 ZNF277Q9NRM2 450 aaPredicted RBP28.99■■■□□ 2.23
VTI1B-201ENST00000216456 BABAM1Q9NWV8 329 aa28.99■■■□□ 2.23
VTI1B-201ENST00000216456 DDNO94850 711 aaPredicted RBP28.98■■■□□ 2.23
VTI1B-201ENST00000216456 VEGFAP15692 232 aaPredicted RBP28.98■■■□□ 2.23
VTI1B-201ENST00000216456 CRY2Q49AN0 593 aa28.98■■■□□ 2.23
VTI1B-201ENST00000216456 DNAJC5GQ8N7S2 189 aa28.98■■■□□ 2.23
VTI1B-201ENST00000216456 DICER1Q9UPY3 1922 aaKnown RBP28.97■■■□□ 2.23
VTI1B-201ENST00000216456 COPS6Q7L5N1 327 aa28.97■■■□□ 2.23
VTI1B-201ENST00000216456 XAGE3Q8WTP9 111 aa28.97■■■□□ 2.23
VTI1B-201ENST00000216456 FSTL1Q12841 308 aa28.96■■■□□ 2.23
VTI1B-201ENST00000216456 SOGA3Q5TF21 947 aa28.96■■■□□ 2.23
VTI1B-201ENST00000216456 CCDC184Q52MB2 194 aa28.95■■■□□ 2.22
VTI1B-201ENST00000216456 DPY19L2Q6NUT2 758 aa28.95■■■□□ 2.22
VTI1B-201ENST00000216456 FKBP4Q02790 459 aaKnown RBP eCLIP28.94■■■□□ 2.22
VTI1B-201ENST00000216456 TCERG1O14776 1098 aaKnown RBP28.93■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms