RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 EPHA10Q5JZY3 1008 aa12.94□□□□□ -0.34
USP28-201ENST00000003302 MSNP26038 577 aaKnown RBP12.94□□□□□ -0.34
USP28-201ENST00000003302 SASH1O94885 1247 aa12.94□□□□□ -0.34
USP28-201ENST00000003302 MAP3K2Q9Y2U5 619 aa12.94□□□□□ -0.34
USP28-201ENST00000003302 ME3Q16798 604 aa12.94□□□□□ -0.34
USP28-201ENST00000003302 LMOD2Q6P5Q4 547 aa12.94□□□□□ -0.34
USP28-201ENST00000003302 PPP6R1Q9UPN7 881 aa12.94□□□□□ -0.34
USP28-201ENST00000003302 EAF2Q96CJ1 260 aaPredicted RBP12.93□□□□□ -0.34
USP28-201ENST00000003302 ZNF589Q86UQ0 364 aaPredicted RBP12.93□□□□□ -0.34
USP28-201ENST00000003302 PLCB2Q00722 1185 aa12.93□□□□□ -0.34
USP28-201ENST00000003302 DNAAF4Q8WXU2 420 aa12.93□□□□□ -0.34
USP28-201ENST00000003302 HYPKQ9NX55 129 aa12.93□□□□□ -0.34
USP28-201ENST00000003302 ZKSCAN5Q9Y2L8 839 aa12.93□□□□□ -0.34
USP28-201ENST00000003302 COL15A1P39059 1388 aa12.93□□□□□ -0.34
USP28-201ENST00000003302 A0A0D9SFI3 127 aa12.92□□□□□ -0.34
USP28-201ENST00000003302 TPCN1Q9ULQ1 816 aa12.92□□□□□ -0.34
USP28-201ENST00000003302 SUCLG2Q96I99 432 aa12.92□□□□□ -0.34
USP28-201ENST00000003302 JAKMIP1Q96N16 626 aaKnown RBP12.92□□□□□ -0.34
USP28-201ENST00000003302 LTN1O94822 1766 aa12.92□□□□□ -0.34
USP28-201ENST00000003302 CEMIPQ8WUJ3 1361 aa12.92□□□□□ -0.34
USP28-201ENST00000003302 TTC21AQ8NDW8 1320 aa12.91□□□□□ -0.34
USP28-201ENST00000003302 BTBD11A6QL63 1104 aa12.91□□□□□ -0.34
USP28-201ENST00000003302 SEC62Q99442 399 aaKnown RBP12.91□□□□□ -0.34
USP28-201ENST00000003302 ZMYND15Q9H091 742 aa12.91□□□□□ -0.34
USP28-201ENST00000003302 STK3Q13188 491 aa12.91□□□□□ -0.34
USP28-201ENST00000003302 BOLA2Q9H3K6 86 aa12.91□□□□□ -0.34
USP28-201ENST00000003302 CAMK4Q16566 473 aa12.91□□□□□ -0.34
USP28-201ENST00000003302 DDX11Q96FC9 970 aa12.91□□□□□ -0.34
USP28-201ENST00000003302 GJB2P29033 226 aa12.91□□□□□ -0.34
USP28-201ENST00000003302 ZNF530Q6P9A1 599 aaPredicted RBP12.91□□□□□ -0.34
USP28-201ENST00000003302 CDC37L1Q7L3B6 337 aa12.91□□□□□ -0.34
USP28-201ENST00000003302 MYL6BP14649 208 aa12.9□□□□□ -0.34
USP28-201ENST00000003302 LRRC2Q9BYS8 371 aa12.9□□□□□ -0.34
USP28-201ENST00000003302 BICC1Q9H694 974 aaKnown RBP12.9□□□□□ -0.34
USP28-201ENST00000003302 STX6O43752 255 aa12.9□□□□□ -0.34
USP28-201ENST00000003302 OS9Q13438 667 aaPredicted RBP12.9□□□□□ -0.34
USP28-201ENST00000003302 ESCO1Q5FWF5 840 aa12.9□□□□□ -0.34
USP28-201ENST00000003302 CCDC129Q6ZRS4 1044 aa12.9□□□□□ -0.34
USP28-201ENST00000003302 UQCRHLA0A096LP55 91 aa12.9□□□□□ -0.34
USP28-201ENST00000003302 UQCRHP07919 91 aa12.9□□□□□ -0.34
USP28-201ENST00000003302 TFIP11Q9UBB9 837 aaKnown RBP12.89□□□□□ -0.35
USP28-201ENST00000003302 MTMR6Q9Y217 621 aa12.89□□□□□ -0.35
USP28-201ENST00000003302 VPS37CA5D8V6 355 aaPredicted RBP12.89□□□□□ -0.35
USP28-201ENST00000003302 IGKV5-2P06315 115 aa12.89□□□□□ -0.35
USP28-201ENST00000003302 TSPY26PQ9H489 355 aa12.89□□□□□ -0.35
USP28-201ENST00000003302 USP16Q9Y5T5 823 aa12.89□□□□□ -0.35
USP28-201ENST00000003302 FOSBP53539 338 aa12.89□□□□□ -0.35
USP28-201ENST00000003302 AACSQ86V21 672 aa12.89□□□□□ -0.35
USP28-201ENST00000003302 FTOQ9C0B1 505 aaKnown RBP eCLIP12.89□□□□□ -0.35
USP28-201ENST00000003302 EID1Q9Y6B2 187 aa12.89□□□□□ -0.35
USP28-201ENST00000003302 LIG1P18858 919 aa12.89□□□□□ -0.35
USP28-201ENST00000003302 ZSCAN22P10073 491 aaPredicted RBP12.88□□□□□ -0.35
USP28-201ENST00000003302 HAP1P54257 671 aaPredicted RBP12.88□□□□□ -0.35
USP28-201ENST00000003302 SPC24Q8NBT2 197 aa12.88□□□□□ -0.35
USP28-201ENST00000003302 KIF1BPQ96EK5 621 aa12.88□□□□□ -0.35
USP28-201ENST00000003302 INTS4Q96HW7 963 aaKnown RBP12.88□□□□□ -0.35
USP28-201ENST00000003302 ZNF500O60304 480 aaPredicted RBP12.88□□□□□ -0.35
USP28-201ENST00000003302 HDGFP51858 240 aaKnown RBP12.88□□□□□ -0.35
USP28-201ENST00000003302 NMIQ13287 307 aaPredicted RBP12.88□□□□□ -0.35
USP28-201ENST00000003302 GIGYF1O75420 1035 aaPredicted RBP12.88□□□□□ -0.35
USP28-201ENST00000003302 ANAPC15P60006 121 aa12.88□□□□□ -0.35
USP28-201ENST00000003302 PDIA6Q15084 440 aa12.88□□□□□ -0.35
USP28-201ENST00000003302 TTC6Q86TZ1 520 aa12.88□□□□□ -0.35
USP28-201ENST00000003302 KCNF1Q9H3M0 494 aa12.88□□□□□ -0.35
USP28-201ENST00000003302 TBX22Q9Y458 520 aa12.88□□□□□ -0.35
USP28-201ENST00000003302 ADCY5O95622 1261 aa12.88□□□□□ -0.35
USP28-201ENST00000003302 JAK2O60674 1132 aa12.87□□□□□ -0.35
USP28-201ENST00000003302 F13A1P00488 732 aa12.87□□□□□ -0.35
USP28-201ENST00000003302 ANP32BQ92688 251 aaKnown RBP12.87□□□□□ -0.35
USP28-201ENST00000003302 ERCC4Q92889 916 aaPredicted RBP12.87□□□□□ -0.35
USP28-201ENST00000003302 PHF8Q9UPP1 1060 aa12.87□□□□□ -0.35
USP28-201ENST00000003302 ZC3H6P61129 1189 aaKnown RBP12.87□□□□□ -0.35
USP28-201ENST00000003302 NECTIN1Q15223 517 aa12.87□□□□□ -0.35
USP28-201ENST00000003302 CKAP2LQ8IYA6 745 aa12.87□□□□□ -0.35
USP28-201ENST00000003302 FUCA2Q9BTY2 467 aa12.87□□□□□ -0.35
USP28-201ENST00000003302 PYCARDQ9ULZ3 195 aa12.87□□□□□ -0.35
USP28-201ENST00000003302 RBM8AQ9Y5S9 174 aaKnown RBP12.87□□□□□ -0.35
USP28-201ENST00000003302 C9orf78Q9NZ63 289 aaPredicted RBP12.86□□□□□ -0.35
USP28-201ENST00000003302 MCCP23508 829 aa12.86□□□□□ -0.35
USP28-201ENST00000003302 LIMCH1Q9UPQ0 1083 aa12.86□□□□□ -0.35
USP28-201ENST00000003302 TEFQ10587 303 aa12.86□□□□□ -0.35
USP28-201ENST00000003302 IP6K1Q92551 441 aa12.86□□□□□ -0.35
USP28-201ENST00000003302 CACNA1FO60840 1977 aa12.86□□□□□ -0.35
USP28-201ENST00000003302 RRP9O43818 475 aaKnown RBP12.85□□□□□ -0.35
USP28-201ENST00000003302 PRDM10Q9NQV6 1147 aa12.85□□□□□ -0.35
USP28-201ENST00000003302 CABLES1Q8TDN4 633 aa12.85□□□□□ -0.35
USP28-201ENST00000003302 IL17RAQ96F46 866 aa12.85□□□□□ -0.35
USP28-201ENST00000003302 PTMSP20962 102 aa12.85□□□□□ -0.35
USP28-201ENST00000003302 CNTROBQ8N137 903 aa12.85□□□□□ -0.35
USP28-201ENST00000003302 NRBP1Q9UHY1 535 aa12.85□□□□□ -0.35
USP28-201ENST00000003302 WDR33Q9C0J8 1336 aaKnown RBP12.85□□□□□ -0.35
USP28-201ENST00000003302 ATP5J2-PTCD1G3V325 749 aa12.85□□□□□ -0.35
USP28-201ENST00000003302 PTCD1O75127 700 aaKnown RBP12.85□□□□□ -0.35
USP28-201ENST00000003302 RAB11FIP3O75154 756 aa12.85□□□□□ -0.35
USP28-201ENST00000003302 PTMAP06454 111 aaKnown RBP12.85□□□□□ -0.35
USP28-201ENST00000003302 CREB3L3Q68CJ9 461 aa12.85□□□□□ -0.35
USP28-201ENST00000003302 ZNF710Q8N1W2 664 aa12.85□□□□□ -0.35
USP28-201ENST00000003302 DIAPH3Q9NSV4 1193 aa12.85□□□□□ -0.35
USP28-201ENST00000003302 RNMTO43148 476 aaKnown RBP12.84□□□□□ -0.35
USP28-201ENST00000003302 MBD3O95983 291 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms