RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 BCO1Q9HAY6 547 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 NMRAL1Q9HBL8 299 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 B4GALT6Q9UBX8 382 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 TFR2Q9UP52 801 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 PRKAB1Q9Y478 270 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CDH10Q9Y6N8 788 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 PTPRDP23468 1912 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 COL1A2P08123 1366 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 LOC102725191A0A1B0GVB3 256 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 XKRY2A2RUG3 117 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 NPIPA5E9PKD4 350 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 OR10H3O60404 316 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 UGDHO60701 494 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 UGT2B17O75795 530 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 OR5AC1P0C628 307 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 PBLDP30039 288 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 CSNK2A1P68400 391 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SPOCK1Q08629 439 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 MERTKQ12866 999 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 CHAF1BQ13112 559 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 MTF1Q14872 753 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 HES5Q5TA89 166 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 UNC5AQ6ZN44 842 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 COX15Q7KZN9 410 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 TOMM5Q8N4H5 51 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 RHOXF1Q8NHV9 184 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 LCN9Q8WX39 176 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 EDAQ92838 391 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 DAZAP1Q96EP5 407 aaKnown RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 HSPBAP1Q96EW2 488 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 CNTNAP3BQ96NU0 1288 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 GPR78Q96P69 363 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 NUDT16L1Q9BRJ7 211 aaKnown RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 MXRA8Q9BRK3 442 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 GON7Q9BXV9 100 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 POMKQ9H5K3 350 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 ELOVL3Q9HB03 270 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 ATP13A2Q9NQ11 1180 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 MEPEQ9NQ76 525 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 NLGN3Q9NZ94 848 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 DNAJC5BQ9UF47 199 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 NPIPA1Q9UND3 350 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 MTF2Q9Y483 593 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 PARP4Q9UKK3 1724 aaKnown RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 PTPRUQ92729 1446 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 OR6C65A6NJZ3 312 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 DVL1O14640 695 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 LIPFP07098 398 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 RHOP08100 348 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 PSMB10P40306 273 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SLC6A9P48067 706 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 MAP2K6P52564 334 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 DVL1P1P54792 670 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 CLRN1P58418 232 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 ERVK-8P63133 956 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SLC35B1P78383 322 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 DDR1Q08345 913 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SP140Q13342 867 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 PRRT3Q5FWE3 981 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 FBXO31Q5XUX0 539 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 PAMR1Q6UXH9 720 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 GCNT7Q6ZNI0 430 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 GDPD3Q7L5L3 318 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SLC35F3Q8IY50 421 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 COMMD1Q8N668 190 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 MTMR14Q8NCE2 650 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 FAM83FQ8NEG4 500 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 OR52B6Q8NGF0 335 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 KCTD12Q96CX2 325 aaKnown RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 RTP4Q96DX8 246 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 ACBD6Q9BR61 282 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 BTBD2Q9BX70 525 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 OR2AG1Q9H205 316 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM8AQ9HCN3 771 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 MRPS30Q9NP92 439 aaKnown RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 LTB4R2Q9NPC1 389 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SACM1LQ9NTJ5 587 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 ASF1BQ9NVP2 202 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 APEX2Q9UBZ4 518 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 ZCCHC11Q5TAX3 1644 aaKnown RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 TRAV6A0A075B6T7 132 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 MTMR11A4FU01 709 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SOCS7O14512 581 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 ACOT8O14734 319 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 ENTPD6O75354 484 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 UNC5CO95185 931 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SCG5P05408 212 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SNRPB2P08579 225 aaKnown RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 CHRM5P08912 532 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 NAT1P18440 290 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 CSNK2A2P19784 350 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 MAKP20794 623 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 LIMK2P53671 638 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 CD47Q08722 323 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 MAPKAPK3Q16644 382 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 PRAMEF19Q5SWL8 479 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 NXNL2Q5VZ03 156 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 NANOGP8Q6NSW7 305 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF546Q86UE3 836 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 PTOV1Q86YD1 416 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms