RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 TMEM156Q8N614 296 aa17.86■□□□□ 0.45
CLN3-260ENST00000637578 DGAT2Q96PD7 388 aa17.86■□□□□ 0.45
CLN3-260ENST00000637578 PAIP2Q9BPZ3 127 aaKnown RBP17.86■□□□□ 0.45
CLN3-260ENST00000637578 ELOVL6Q9H5J4 265 aa17.86■□□□□ 0.45
CLN3-260ENST00000637578 LIN28AQ9H9Z2 209 aaKnown RBP17.86■□□□□ 0.45
CLN3-260ENST00000637578 BRF2Q9HAW0 419 aa17.86■□□□□ 0.45
CLN3-260ENST00000637578 NKIRAS1Q9NYS0 192 aa17.86■□□□□ 0.45
CLN3-260ENST00000637578 AHSPQ9NZD4 102 aa17.86■□□□□ 0.45
CLN3-260ENST00000637578 UTP20O75691 2785 aaKnown RBP17.86■□□□□ 0.45
CLN3-260ENST00000637578 A0A1B0GUH1 482 aa17.85■□□□□ 0.45
CLN3-260ENST00000637578 UBFD1O14562 309 aaKnown RBP17.85■□□□□ 0.45
CLN3-260ENST00000637578 DYNC1I1O14576 645 aa17.85■□□□□ 0.45
CLN3-260ENST00000637578 BIRC5O15392 142 aa17.85■□□□□ 0.45
CLN3-260ENST00000637578 AIFM1O95831 613 aa17.85■□□□□ 0.45
CLN3-260ENST00000637578 PDYNP01213 254 aa17.85■□□□□ 0.45
CLN3-260ENST00000637578 GBAP04062 536 aa17.85■□□□□ 0.45
CLN3-260ENST00000637578 NR2F6P10588 404 aa17.85■□□□□ 0.45
CLN3-260ENST00000637578 ALOX15P16050 662 aaPredicted RBP17.85■□□□□ 0.45
CLN3-260ENST00000637578 GALNSP34059 522 aa17.85■□□□□ 0.45
CLN3-260ENST00000637578 HK2P52789 917 aa17.85■□□□□ 0.45
CLN3-260ENST00000637578 PLIN5Q00G26 463 aa17.85■□□□□ 0.45
CLN3-260ENST00000637578 ALDH6A1Q02252 535 aaKnown RBP17.85■□□□□ 0.45
CLN3-260ENST00000637578 RNFT1Q5M7Z0 435 aa17.85■□□□□ 0.45
CLN3-260ENST00000637578 HHATQ5VTY9 493 aa17.85■□□□□ 0.45
CLN3-260ENST00000637578 GPRIN3Q6ZVF9 776 aa17.85■□□□□ 0.45
CLN3-260ENST00000637578 MDGA2Q7Z553 956 aa17.85■□□□□ 0.45
CLN3-260ENST00000637578 CYP4Z2PQ8N1L4 340 aa17.85■□□□□ 0.45
CLN3-260ENST00000637578 SREK1Q8WXA9 508 aaKnown RBP17.85■□□□□ 0.45
CLN3-260ENST00000637578 UCN3Q969E3 161 aa17.85■□□□□ 0.45
CLN3-260ENST00000637578 PPWD1Q96BP3 646 aaKnown RBP17.85■□□□□ 0.45
CLN3-260ENST00000637578 GPR137Q96N19 417 aa17.85■□□□□ 0.45
CLN3-260ENST00000637578 RASL10BQ96S79 203 aa17.85■□□□□ 0.45
CLN3-260ENST00000637578 MRPL1Q9BYD6 325 aaKnown RBP17.85■□□□□ 0.45
CLN3-260ENST00000637578 SNX6Q9UNH7 406 aa17.85■□□□□ 0.45
CLN3-260ENST00000637578 STK38LQ9Y2H1 464 aa17.85■□□□□ 0.45
CLN3-260ENST00000637578 KLF13Q9Y2Y9 288 aaPredicted RBP17.85■□□□□ 0.45
CLN3-260ENST00000637578 OR4F21O95013 312 aa17.84■□□□□ 0.45
CLN3-260ENST00000637578 SPRED3Q2MJR0 410 aa17.84■□□□□ 0.45
CLN3-260ENST00000637578 SULF2Q8IWU5 870 aa17.84■□□□□ 0.45
CLN3-260ENST00000637578 POGLUT1Q8NBL1 392 aa17.84■□□□□ 0.45
CLN3-260ENST00000637578 OR5L2Q8NGL0 311 aa17.84■□□□□ 0.45
CLN3-260ENST00000637578 AGAP11Q8TF27 550 aa17.84■□□□□ 0.45
CLN3-260ENST00000637578 FBXL20Q96IG2 436 aa17.84■□□□□ 0.45
CLN3-260ENST00000637578 PELOQ9BRX2 385 aaKnown RBP17.84■□□□□ 0.45
CLN3-260ENST00000637578 WDR41Q9HAD4 459 aa17.84■□□□□ 0.45
CLN3-260ENST00000637578 TEX10Q9NXF1 929 aaPredicted RBP17.84■□□□□ 0.45
CLN3-260ENST00000637578 GLOD5A6NK44 160 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 WWP2O00308 870 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 PGRMC2O15173 223 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 ATP8B1O43520 1251 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 CLDN1O95832 211 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 KLK1P06870 262 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 PKNOX1P55347 436 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 GALNT1Q10472 559 aaPredicted RBP17.83■□□□□ 0.45
CLN3-260ENST00000637578 TBL3Q12788 808 aaKnown RBP17.83■□□□□ 0.45
CLN3-260ENST00000637578 CHI3L2Q15782 390 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 MPEG1Q2M385 716 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 SGO1Q5FBB7 561 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 CES4AQ5XG92 561 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 OR52E8Q6IFG1 317 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 PAGE2Q7Z2X7 111 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 CPSF7Q8N684 471 aaKnown RBP17.83■□□□□ 0.45
CLN3-260ENST00000637578 CDYL2Q8N8U2 506 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 OR6Y1Q8NGX8 325 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 NUBPLQ8TB37 319 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 SELENOMQ8WWX9 145 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 ART5Q96L15 291 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 TRMOQ9BU70 441 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 SHCBP1LQ9BZQ2 653 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 MID1IP1Q9NPA3 183 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 COPS7AQ9UBW8 275 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 ZNF835Q9Y2P0 537 aa17.83■□□□□ 0.45
CLN3-260ENST00000637578 A8MVJ9 347 aa17.83■□□□□ 0.44
CLN3-260ENST00000637578 KLRC4-KLRK1H3BQV0 150 aa17.83■□□□□ 0.44
CLN3-260ENST00000637578 HRKO00198 91 aa17.83■□□□□ 0.44
CLN3-260ENST00000637578 NPHS1O60500 1241 aa17.83■□□□□ 0.44
CLN3-260ENST00000637578 ZNF354AO60765 605 aaPredicted RBP17.83■□□□□ 0.44
CLN3-260ENST00000637578 OR6B1O95007 311 aa17.83■□□□□ 0.44
CLN3-260ENST00000637578 ESRRBO95718 433 aa17.83■□□□□ 0.44
CLN3-260ENST00000637578 SLC35E2P0CK97 266 aa17.83■□□□□ 0.44
CLN3-260ENST00000637578 HSD3B1P14060 373 aa17.83■□□□□ 0.44
CLN3-260ENST00000637578 HSD3B2P26439 372 aa17.83■□□□□ 0.44
CLN3-260ENST00000637578 PER3P56645 1201 aa17.83■□□□□ 0.44
CLN3-260ENST00000637578 CCNYL2Q5T2Q4 361 aa17.83■□□□□ 0.44
CLN3-260ENST00000637578 C1QL3Q5VWW1 255 aa17.83■□□□□ 0.44
CLN3-260ENST00000637578 COMMD6Q7Z4G1 85 aa17.83■□□□□ 0.44
CLN3-260ENST00000637578 C9orf40Q8IXQ3 194 aa17.83■□□□□ 0.44
CLN3-260ENST00000637578 ZFP62Q8NB50 900 aaPredicted RBP17.83■□□□□ 0.44
CLN3-260ENST00000637578 PPP1R14CQ8TAE6 165 aa17.83■□□□□ 0.44
CLN3-260ENST00000637578 ASB15Q8WXK1 588 aa17.83■□□□□ 0.44
CLN3-260ENST00000637578 TNFRSF12AQ9NP84 129 aa17.83■□□□□ 0.44
CLN3-260ENST00000637578 TIMMDC1Q9NPL8 285 aa17.83■□□□□ 0.44
CLN3-260ENST00000637578 HPF1Q9NWY4 346 aa17.83■□□□□ 0.44
CLN3-260ENST00000637578 SLC12A4Q9UP95 1085 aa17.83■□□□□ 0.44
CLN3-260ENST00000637578 NPIPA5E9PKD4 350 aa17.82■□□□□ 0.44
CLN3-260ENST00000637578 MANBAO00462 879 aa17.82■□□□□ 0.44
CLN3-260ENST00000637578 ASNA1O43681 348 aa17.82■□□□□ 0.44
CLN3-260ENST00000637578 DYRK3O43781 588 aa17.82■□□□□ 0.44
CLN3-260ENST00000637578 PEX1O43933 1283 aa17.82■□□□□ 0.44
CLN3-260ENST00000637578 CHRNGP07510 517 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms