RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 HOXB6P17509 224 aaKnown RBP10.05□□□□□ -0.8
CUX1-221ENST00000622516 XCR1P46094 333 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 EMP3P54852 163 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 GABARAPL2P60520 117 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 SLC9A5Q14940 896 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 TMEM107Q6UX40 140 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 SLC16A12Q6ZSM3 486 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 MEX3DQ86XN8 651 aaKnown RBP10.05□□□□□ -0.8
CUX1-221ENST00000622516 TMEFF1Q8IYR6 380 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 RORBQ92753 470 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 MUL1Q969V5 352 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 COL26A1Q96A83 441 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 CNRIP1Q96F85 164 aaPredicted RBP10.05□□□□□ -0.8
CUX1-221ENST00000622516 BMFQ96LC9 184 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 AMDHD1Q96NU7 426 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 ALPK1Q96QP1 1244 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 BBS4Q96RK4 519 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 PIP5K1AQ99755 562 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 GABRG3Q99928 467 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 TREX2Q9BQ50 279 aaPredicted RBP10.05□□□□□ -0.8
CUX1-221ENST00000622516 C6orf106Q9H6K1 298 aaPredicted RBP10.05□□□□□ -0.8
CUX1-221ENST00000622516 SLC35C2Q9NQQ7 365 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 PRDM7Q9NQW5 492 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 APOBEC3BQ9UH17 382 aaKnown RBP10.05□□□□□ -0.8
CUX1-221ENST00000622516 TPRKBQ9Y3C4 175 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 KCNE3Q9Y6H6 103 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 M0R3H8 397 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 CLEC3AO75596 197 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 IFNW1P05000 195 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 ASGR2P07307 311 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 ATXN8OSP0DMR3 200 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 NDUFV2P19404 249 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 HIST1H1TP22492 207 aaPredicted RBP10.05□□□□□ -0.8
CUX1-221ENST00000622516 LTBRP36941 435 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 TOP3AQ13472 1001 aaPredicted RBP10.05□□□□□ -0.8
CUX1-221ENST00000622516 PIN1Q13526 163 aaPredicted RBP10.05□□□□□ -0.8
CUX1-221ENST00000622516 DCTN2Q13561 401 aaKnown RBP10.05□□□□□ -0.8
CUX1-221ENST00000622516 TJAP1Q5JTD0 557 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 AMIGO1Q86WK6 493 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 ZNF761Q86XN6 746 aaPredicted RBP10.05□□□□□ -0.8
CUX1-221ENST00000622516 ARMC8Q8IUR7 673 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 P3H2Q8IVL5 708 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 OR4N5Q8IXE1 308 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 TAGAPQ8N103 731 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 RPL3LQ92901 407 aaKnown RBP10.05□□□□□ -0.8
CUX1-221ENST00000622516 HRASLS5Q96KN8 279 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 QRFPRQ96P65 431 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 OR2M4Q96R27 311 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 DUSP21Q9H596 190 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 GPR89AB7ZAQ6 455 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 J3QRK9 145 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 ZNF701M0R085 212 aaPredicted RBP10.05□□□□□ -0.8
CUX1-221ENST00000622516 MAGEB3O15480 346 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 MFN2O95140 757 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 GPR89BP0CG08 455 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 NR2F1P10589 423 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 TMBIM6P55061 237 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 VBP1P61758 197 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 BTN3A2P78410 334 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 GRSF1Q12849 480 aaKnown RBP eCLIP10.05□□□□□ -0.8
CUX1-221ENST00000622516 SEC23BQ15437 767 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 SYT16Q17RD7 645 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 ABHD17CQ6PCB6 329 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 ALDH16A1Q8IZ83 802 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 SIMC1Q8NDZ2 872 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 ZCCHC10Q8TBK6 192 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 TBC1D15Q8TC07 691 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 HMGB4Q8WW32 186 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 KAT2AQ92830 837 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 ZG16BQ96DA0 208 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 ZNF347Q96SE7 839 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 NMNAT1Q9HAN9 279 aaPredicted RBP10.05□□□□□ -0.8
CUX1-221ENST00000622516 GPR83Q9NYM4 423 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 SEC14L3Q9UDX4 400 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.05□□□□□ -0.8
CUX1-221ENST00000622516 A0A0J9YVX5 310 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 RGS10O43665 173 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 PRICKLE3O43900 615 aaPredicted RBP10.04□□□□□ -0.8
CUX1-221ENST00000622516 TPPPO94811 219 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 AIFM1O95831 613 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 BCL10O95999 233 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 IFNA14P01570 189 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 HMGN2P05204 90 aaKnown RBP10.04□□□□□ -0.8
CUX1-221ENST00000622516 CHRM5P08912 532 aaPredicted RBP10.04□□□□□ -0.8
CUX1-221ENST00000622516 MAGP20916 626 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 ATP5A1P25705 553 aaKnown RBP10.04□□□□□ -0.8
CUX1-221ENST00000622516 OLR1P78380 273 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 HTR4Q13639 388 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 LTB4RQ15722 352 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 TCTN3Q6NUS6 607 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 SLC35B4Q969S0 331 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 MAPKAP1Q9BPZ7 522 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 C1QTNF7Q9BXJ2 289 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 TCEAL2Q9H3H9 227 aaPredicted RBP10.04□□□□□ -0.8
CUX1-221ENST00000622516 NEUROD4Q9HD90 331 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 TMEM74BQ9NUR3 256 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 TAS2R16Q9NYV7 291 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 PSME2Q9UL46 239 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 PCDHGA2Q9Y5H1 932 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 ENPP4Q9Y6X5 453 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms