RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 SLC22A16Q86VW1 577 aa17.54■□□□□ 0.4
CDX1-202ENST00000616154 ZCCHC7Q8N3Z6 543 aaKnown RBP17.54■□□□□ 0.4
CDX1-202ENST00000616154 RPRMLQ8N4K4 120 aa17.54■□□□□ 0.4
CDX1-202ENST00000616154 PTGR2Q8N8N7 351 aaPredicted RBP17.54■□□□□ 0.4
CDX1-202ENST00000616154 WDR20Q8TBZ3 569 aa17.54■□□□□ 0.4
CDX1-202ENST00000616154 TLCD1Q96CP7 247 aa17.54■□□□□ 0.4
CDX1-202ENST00000616154 NTMT1Q9BV86 223 aa17.54■□□□□ 0.4
CDX1-202ENST00000616154 TTTY12Q9BZ98 90 aa17.54■□□□□ 0.4
CDX1-202ENST00000616154 OR8D2Q9GZM6 311 aa17.54■□□□□ 0.4
CDX1-202ENST00000616154 ACBD3Q9H3P7 528 aa17.54■□□□□ 0.4
CDX1-202ENST00000616154 IPPKQ9H8X2 491 aa17.54■□□□□ 0.4
CDX1-202ENST00000616154 ACTR8Q9H981 624 aa17.54■□□□□ 0.4
CDX1-202ENST00000616154 CPSF2Q9P2I0 782 aaKnown RBP17.54■□□□□ 0.4
CDX1-202ENST00000616154 PCTPQ9UKL6 214 aa17.54■□□□□ 0.4
CDX1-202ENST00000616154 SETD2Q9BYW2 2564 aaPredicted RBP17.53■□□□□ 0.4
CDX1-202ENST00000616154 FOXO6A8MYZ6 492 aa17.53■□□□□ 0.4
CDX1-202ENST00000616154 C17orf105B2RV13 164 aa17.53■□□□□ 0.4
CDX1-202ENST00000616154 FOXE1O00358 373 aaPredicted RBP17.53■□□□□ 0.4
CDX1-202ENST00000616154 OR7A17O14581 309 aa17.53■□□□□ 0.4
CDX1-202ENST00000616154 TOXO94900 526 aa17.53■□□□□ 0.4
CDX1-202ENST00000616154 TGFB1P01137 390 aa17.53■□□□□ 0.4
CDX1-202ENST00000616154 RPS17P08708 135 aaKnown RBP17.53■□□□□ 0.4
CDX1-202ENST00000616154 PCNAP12004 261 aa17.53■□□□□ 0.4
CDX1-202ENST00000616154 RNF4P78317 190 aa17.53■□□□□ 0.4
CDX1-202ENST00000616154 SLC18A2Q05940 514 aa17.53■□□□□ 0.4
CDX1-202ENST00000616154 CUL3Q13618 768 aa17.53■□□□□ 0.4
CDX1-202ENST00000616154 C10orf62Q5T681 223 aaPredicted RBP17.53■□□□□ 0.4
CDX1-202ENST00000616154 AGBL2Q5U5Z8 902 aa17.53■□□□□ 0.4
CDX1-202ENST00000616154 ACAD11Q709F0 780 aa17.53■□□□□ 0.4
CDX1-202ENST00000616154 ZNF321PQ8N8H1 164 aa17.53■□□□□ 0.4
CDX1-202ENST00000616154 GOLM1Q8NBJ4 401 aa17.53■□□□□ 0.4
CDX1-202ENST00000616154 C7orf57Q8NEG2 295 aa17.53■□□□□ 0.4
CDX1-202ENST00000616154 REPS1Q96D71 796 aa17.53■□□□□ 0.4
CDX1-202ENST00000616154 SCYL1Q96KG9 808 aa17.53■□□□□ 0.4
CDX1-202ENST00000616154 FAM173AQ9BQD7 235 aa17.53■□□□□ 0.4
CDX1-202ENST00000616154 ZNF717Q9BY31 904 aaPredicted RBP17.53■□□□□ 0.4
CDX1-202ENST00000616154 ZBTB26Q9HCK0 441 aa17.53■□□□□ 0.4
CDX1-202ENST00000616154 SENP1Q9P0U3 644 aa17.53■□□□□ 0.4
CDX1-202ENST00000616154 ACTL7BQ9Y614 415 aa17.53■□□□□ 0.4
CDX1-202ENST00000616154 MYOCOSA0A1B0GUC4 107 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 A0A1W2PPM1 405 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 NKX2-6A6NCS4 301 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 OR14I1A6ND48 311 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 FAM90A27PA6NNH2 459 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 RTCAO00442 366 aaKnown RBP17.52■□□□□ 0.4
CDX1-202ENST00000616154 LDB3O75112 727 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 IGHG3P01860 377 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 TNNI3P19429 210 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 MSX1P28360 303 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 NUP107P57740 925 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 IGLV3-21P80748 117 aaPredicted RBP17.52■□□□□ 0.4
CDX1-202ENST00000616154 TRAF3Q13114 568 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 AP5B1Q2VPB7 878 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 ZNF750Q32MQ0 723 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 GGTA1PQ4G0N0 100 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 OR5L2Q8NGL0 311 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 SLC2A12Q8TD20 617 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 ARL8AQ96BM9 186 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 SGCZQ96LD1 299 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 MAPKAP1Q9BPZ7 522 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 UCK2Q9BZX2 261 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 STMN4Q9H169 189 aaPredicted RBP17.52■□□□□ 0.4
CDX1-202ENST00000616154 OR51B5Q9H339 312 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 IL1RL2Q9HB29 575 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 KCNJ16Q9NPI9 418 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 MKS1Q9NXB0 559 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 SPACA6W5XKT8 324 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 MTORP42345 2549 aa17.52■□□□□ 0.4
CDX1-202ENST00000616154 GOLGA6L10A6NI86 522 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 NPIPA2E9PIF3 369 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 NPIPA3F8WFD2 350 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 G3V3Y1 287 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 PLPP1O14494 284 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 ZNF354AO60765 605 aaPredicted RBP17.51■□□□□ 0.39
CDX1-202ENST00000616154 SMIM24O75264 130 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 CLDN9O95484 217 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 KRT15P19012 456 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 CNR1P21554 472 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 PTX3P26022 381 aaPredicted RBP17.51■□□□□ 0.39
CDX1-202ENST00000616154 SSR2P43308 183 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 PMPCAQ10713 525 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 GXYLT1Q4G148 440 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 OR4C11Q6IEV9 310 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 MRM1Q6IN84 353 aaKnown RBP17.51■□□□□ 0.39
CDX1-202ENST00000616154 OPN5Q6U736 354 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 SPNS3Q6ZMD2 512 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 EXOC3L1Q86VI1 746 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 CCDC71Q8IV32 467 aaPredicted RBP17.51■□□□□ 0.39
CDX1-202ENST00000616154 FAM109AQ8N4B1 249 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 OR52B6Q8NGF0 335 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 OR5M3Q8NGP4 307 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 SREK1Q8WXA9 508 aaKnown RBP17.51■□□□□ 0.39
CDX1-202ENST00000616154 RGMAQ96B86 450 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 PHF21BQ96EK2 531 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 SMC6Q96SB8 1091 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 MTERF1Q99551 399 aaKnown RBP17.51■□□□□ 0.39
CDX1-202ENST00000616154 CENPKQ9BS16 269 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 NOL11Q9H8H0 719 aaKnown RBP17.51■□□□□ 0.39
CDX1-202ENST00000616154 PNPLA3Q9NST1 481 aa17.51■□□□□ 0.39
CDX1-202ENST00000616154 SACM1LQ9NTJ5 587 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms