RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 G3V3Y1 287 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 CDC7O00311 574 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 EEF1E1O43324 174 aaKnown RBP5.78□□□□□ -1.48
CUX1-220ENST00000607092 PRKNO60260 465 aaPredicted RBP5.78□□□□□ -1.48
CUX1-220ENST00000607092 SMPD2O60906 423 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 DNAJB6O75190 326 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 TRAPPC6AO75865 159 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 B3GALT4O96024 378 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 IGKV3-11P04433 115 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 HPNP05981 417 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 CRHP06850 196 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 CYP4B1P13584 511 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 ALOX15P16050 662 aaPredicted RBP5.78□□□□□ -1.48
CUX1-220ENST00000607092 NAGAP17050 411 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 KRT15P19012 456 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 CPN2P22792 545 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 CERS1P27544 350 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 HNRNPH1P31943 449 aaKnown RBP5.78□□□□□ -1.48
CUX1-220ENST00000607092 PIGAP37287 484 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 CASP2P42575 452 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 SSR2P43308 183 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 CPA2P48052 419 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 PSPHP78330 225 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 IGLV3-21P80748 117 aaPredicted RBP5.78□□□□□ -1.48
CUX1-220ENST00000607092 TIAL1Q01085 375 aaKnown RBP eCLIP5.78□□□□□ -1.48
CUX1-220ENST00000607092 IRF8Q02556 426 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 PCDH1Q08174 1060 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 MGAT5Q09328 741 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 MORF4L2Q15014 288 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 NTRK2Q16620 822 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 PDK4Q16654 411 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 CYP1B1Q16678 543 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 SPRED3Q2MJR0 410 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 RBM20Q5T481 1227 aaKnown RBP5.78□□□□□ -1.48
CUX1-220ENST00000607092 TEDDM1Q5T9Z0 273 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 RNASEH2BQ5TBB1 312 aaKnown RBP5.78□□□□□ -1.48
CUX1-220ENST00000607092 VASNQ6EMK4 673 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 OR2A2Q6IF42 318 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 SULT1C3Q6IMI6 304 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 ENPP6Q6UWR7 440 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 RNF111Q6ZNA4 994 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 LRRC70Q7Z2Q7 622 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 CLNKQ7Z7G1 428 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 ACOT4Q8N9L9 421 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 RELL2Q8NC24 303 aaPredicted RBP5.78□□□□□ -1.48
CUX1-220ENST00000607092 MBD3L2Q8NHZ7 208 aaPredicted RBP5.78□□□□□ -1.48
CUX1-220ENST00000607092 ZNF721Q8TF20 911 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 DIO2Q92813 273 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 RHBDF1Q96CC6 855 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 REPS1Q96D71 796 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 TIMP4Q99727 224 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 SPNS1Q9H2V7 528 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 KCNF1Q9H3M0 494 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 GSX1Q9H4S2 264 aaPredicted RBP5.78□□□□□ -1.48
CUX1-220ENST00000607092 RPF2Q9H7B2 306 aaKnown RBP5.78□□□□□ -1.48
CUX1-220ENST00000607092 PLEKHF2Q9H8W4 249 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 SH2D2AQ9NP31 389 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 FANCFQ9NPI8 374 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 LYARQ9NX58 379 aaKnown RBP5.78□□□□□ -1.48
CUX1-220ENST00000607092 ZNF226Q9NYT6 803 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 TXNDC16Q9P2K2 825 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 ASIC3Q9UHC3 531 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 CAMK2AQ9UQM7 478 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 JRKLQ9Y4A0 524 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 CLDN16Q9Y5I7 305 aa5.78□□□□□ -1.48
CUX1-220ENST00000607092 A0A0G2JN53 185 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 CCDC189A1A4V9 331 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 SH3D21A4FU49 640 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 C4orf51C9J302 202 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 DNALI1O14645 258 aaPredicted RBP5.77□□□□□ -1.49
CUX1-220ENST00000607092 OR10H2O60403 315 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 ICMTO60725 284 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 TRIM3O75382 744 aaPredicted RBP5.77□□□□□ -1.49
CUX1-220ENST00000607092 GPR75O95800 540 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 HRGP04196 525 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 CELA3AP09093 270 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 RHOXF2BP0C7M4 288 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 TMIGD3P0DMS9 266 aaPredicted RBP5.77□□□□□ -1.49
CUX1-220ENST00000607092 CPN1P15169 458 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 ATP5A1P25705 553 aaKnown RBP5.77□□□□□ -1.49
CUX1-220ENST00000607092 GABRB3P28472 473 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 PIK3CBP42338 1070 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 CDK9P50750 372 aaKnown RBP5.77□□□□□ -1.49
CUX1-220ENST00000607092 RAP1GDS1P52306 607 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 HNRNPFP52597 415 aaKnown RBP5.77□□□□□ -1.49
CUX1-220ENST00000607092 ARL4CP56559 192 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 POU4F1Q01851 419 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 CRYZQ08257 329 aaKnown RBP5.77□□□□□ -1.49
CUX1-220ENST00000607092 DUSP8Q13202 625 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 SNTA1Q13424 505 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 FGFBP1Q14512 234 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 TGFBIQ15582 683 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 C10orf62Q5T681 223 aaPredicted RBP5.77□□□□□ -1.49
CUX1-220ENST00000607092 KHDRBS2Q5VWX1 349 aaKnown RBP5.77□□□□□ -1.49
CUX1-220ENST00000607092 MED27Q6P2C8 311 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 AAGABQ6PD74 315 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 C20orf204Q6ZNR8 217 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 C16orf47Q6ZP98 133 aaPredicted RBP5.77□□□□□ -1.49
CUX1-220ENST00000607092 GPR180Q86V85 440 aa5.77□□□□□ -1.49
CUX1-220ENST00000607092 GPSM1Q86YR5 675 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms