RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 ZFAND2BQ8WV99 257 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 C12orf43Q96C57 262 aaKnown RBP13.66□□□□□ -0.22
VRK3-217ENST00000599538 C16orf58Q96GQ5 468 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 SLC35G5Q96KT7 338 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 TPSD1Q9BZJ3 242 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 RASSF1Q9NS23 344 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 TRPC4Q9UBN4 977 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 KCNE3Q9Y6H6 103 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 SLC28A2O43868 658 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 TRMUO75648 421 aaKnown RBP13.66□□□□□ -0.22
VRK3-217ENST00000599538 DNAJB5O75953 348 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 ANGPTL1O95841 491 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 IFNA14P01570 189 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 GSTM2P28161 218 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 NTSP30990 170 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 STXBP1P61764 594 aaKnown RBP13.66□□□□□ -0.22
VRK3-217ENST00000599538 RPS15AP62244 130 aaKnown RBP13.66□□□□□ -0.22
VRK3-217ENST00000599538 FUT5Q11128 374 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 IL18R1Q13478 541 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 FZD2Q14332 565 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 LASP1Q14847 261 aaKnown RBP13.66□□□□□ -0.22
VRK3-217ENST00000599538 KIR2DS3Q14952 304 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 LTB4RQ15722 352 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 CWF19L1Q69YN2 538 aaKnown RBP13.66□□□□□ -0.22
VRK3-217ENST00000599538 LACC1Q8IV20 430 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 TRIM48Q8IWZ4 208 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 TMEFF1Q8IYR6 380 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 KLHL6Q8WZ60 621 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 ZNF347Q96SE7 839 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 PIP5K1AQ99755 562 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 TREX2Q9BQ50 279 aaPredicted RBP13.66□□□□□ -0.22
VRK3-217ENST00000599538 LHPPQ9H008 270 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 CPNE7Q9UBL6 633 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 MRPS2Q9Y399 296 aaKnown RBP13.66□□□□□ -0.22
VRK3-217ENST00000599538 PCDHGA2Q9Y5H1 932 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 ENPP4Q9Y6X5 453 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 SPEGQ15772 3267 aa13.65□□□□□ -0.22
VRK3-217ENST00000599538 PCDHGA12O60330 932 aa13.65□□□□□ -0.22
VRK3-217ENST00000599538 VIPP01282 170 aa13.65□□□□□ -0.22
VRK3-217ENST00000599538 TNFP01375 233 aa13.65□□□□□ -0.22
VRK3-217ENST00000599538 HMGN2P05204 90 aaKnown RBP13.65□□□□□ -0.22
VRK3-217ENST00000599538 GLULP15104 373 aa13.65□□□□□ -0.22
VRK3-217ENST00000599538 RABIFP47224 123 aa13.65□□□□□ -0.22
VRK3-217ENST00000599538 LIMS1P48059 325 aa13.65□□□□□ -0.22
VRK3-217ENST00000599538 MICAQ29983 383 aa13.65□□□□□ -0.22
VRK3-217ENST00000599538 DEFB134Q4QY38 66 aa13.65□□□□□ -0.22
VRK3-217ENST00000599538 FIGLAQ6QHK4 219 aa13.65□□□□□ -0.22
VRK3-217ENST00000599538 PRSS41Q7RTY9 318 aa13.65□□□□□ -0.22
VRK3-217ENST00000599538 ZNF438Q7Z4V0 828 aa13.65□□□□□ -0.22
VRK3-217ENST00000599538 DEFB119Q8N690 84 aa13.65□□□□□ -0.22
VRK3-217ENST00000599538 OR9A2Q8NGT5 310 aa13.65□□□□□ -0.22
VRK3-217ENST00000599538 SLC37A2Q8TED4 501 aa13.65□□□□□ -0.22
VRK3-217ENST00000599538 SLC22A18Q96BI1 424 aa13.65□□□□□ -0.22
VRK3-217ENST00000599538 TM4SF19Q96DZ7 209 aa13.65□□□□□ -0.22
VRK3-217ENST00000599538 ZNF681Q96N22 645 aa13.65□□□□□ -0.22
VRK3-217ENST00000599538 COL21A1Q96P44 957 aa13.65□□□□□ -0.22
VRK3-217ENST00000599538 POLMQ9NP87 494 aaPredicted RBP13.65□□□□□ -0.22
VRK3-217ENST00000599538 WSB2Q9NYS7 404 aaPredicted RBP13.65□□□□□ -0.22
VRK3-217ENST00000599538 PCDHGA6Q9Y5G7 932 aa13.65□□□□□ -0.22
VRK3-217ENST00000599538 SPTY2D1-AS1A0A0U1RR47 76 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 TNFSF14O43557 240 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 ATE1O95260 518 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 IGLV3-19P01714 112 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 THEGLP0DJG4 465 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 PXNP49023 591 aaPredicted RBP13.64□□□□□ -0.23
VRK3-217ENST00000599538 DGKEP52429 567 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 OLR1P78380 273 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 MAD2L1BPQ15013 274 aaPredicted RBP13.64□□□□□ -0.23
VRK3-217ENST00000599538 COL13A1Q5TAT6 717 aaPredicted RBP13.64□□□□□ -0.23
VRK3-217ENST00000599538 WDR53Q7Z5U6 358 aaPredicted RBP13.64□□□□□ -0.23
VRK3-217ENST00000599538 SIMC1Q8NDZ2 872 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 SRFBP1Q8NEF9 429 aaKnown RBP13.64□□□□□ -0.23
VRK3-217ENST00000599538 OR13F1Q8NGS4 319 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 VANGL1Q8TAA9 524 aaPredicted RBP13.64□□□□□ -0.23
VRK3-217ENST00000599538 KAT2AQ92830 837 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 GAL3ST3Q96A11 431 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 C10orf90Q96M02 699 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 CSF3RQ99062 836 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 PITX2Q99697 317 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 ORAI3Q9BRQ5 295 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 GABARAPL3Q9BY60 117 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 ERVK-18Q9QC07 812 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 PILRAQ9UKJ1 303 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 CA14Q9ULX7 337 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 ZNF860A6NHJ4 632 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 HCRTR1O43613 425 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 MAN1A2O60476 641 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 WBP4O75554 376 aaKnown RBP13.64□□□□□ -0.23
VRK3-217ENST00000599538 GADD45GO95257 159 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 IFNW1P05000 195 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 CHRM4P08173 479 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 JUNBP17275 347 aaPredicted RBP13.64□□□□□ -0.23
VRK3-217ENST00000599538 ITGA2P17301 1181 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 DDX5P17844 614 aaKnown RBP13.64□□□□□ -0.23
VRK3-217ENST00000599538 POU3F3P20264 500 aaPredicted RBP13.64□□□□□ -0.23
VRK3-217ENST00000599538 CD6P30203 668 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 MC3RP41968 323 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 UBE2IP63279 158 aaKnown RBP13.64□□□□□ -0.23
VRK3-217ENST00000599538 RUNX2Q13950 521 aa13.64□□□□□ -0.23
VRK3-217ENST00000599538 GTF2IRD2BQ6EKJ0 949 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms