RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 NMNAT2Q9BZQ4 307 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 CHMP4BQ9H444 224 aaKnown RBP5.32□□□□□ -1.56
VPS53-219ENST00000576019 CWH43Q9H720 699 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 RDH8Q9NYR8 311 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 LRWD1Q9UFC0 647 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 PCSK1NQ9UHG2 260 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 TMED7Q9Y3B3 224 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 MAB21L2Q9Y586 359 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 LCTP09848 1927 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 KMT2CQ8NEZ4 4911 aaKnown RBP5.32□□□□□ -1.56
VPS53-219ENST00000576019 ZNF469Q96JG9 3925 aaPredicted RBP5.31□□□□□ -1.56
VPS53-219ENST00000576019 TRBV5-3A0A0A0MS03 114 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 E9PBE3 544 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 MS4A18H0YCH9 400 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 H3BMM5 538 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 SNX3O60493 162 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 ACP2P11117 423 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 GOT1P17174 413 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 TNNI3P19429 210 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 ITGA3P26006 1051 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 PRDX2P32119 198 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 ADRA1AP35348 466 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 DLSTP36957 453 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 SELENOPP49908 381 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 TNFSF10P50591 281 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 CCL11P51671 97 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 SSTP61278 116 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 DMPKQ09013 629 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 FOXI1Q12951 378 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 CTTNQ14247 550 aaKnown RBP5.31□□□□□ -1.56
VPS53-219ENST00000576019 RBBP7Q16576 425 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 MAPK6Q16659 721 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 TPD52L1Q16890 204 aaPredicted RBP5.31□□□□□ -1.56
VPS53-219ENST00000576019 KIF19Q2TAC6 998 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 RAB6CQ53S08 254 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 Q5PR19 223 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 PRAMEF17Q5VTA0 474 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 ERICH6BQ5W0A0 696 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 OGFOD2Q6N063 350 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 UGT3A1Q6NUS8 523 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 ANGPTL8Q6UXH0 198 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 Q6ZS52 159 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 Q75L30 129 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 GRASPQ7Z6J2 395 aaPredicted RBP5.31□□□□□ -1.56
VPS53-219ENST00000576019 BBS5Q8N3I7 341 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 AADATQ8N5Z0 425 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 SIDT2Q8NBJ9 832 aaKnown RBP5.31□□□□□ -1.56
VPS53-219ENST00000576019 ENGASEQ8NFI3 743 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 OR4K1Q8NGD4 311 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 LINC00476Q8WZB0 136 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 PGM2Q96G03 612 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 C4orf36Q96KX1 117 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 CDK5RAP1Q96SZ6 601 aaKnown RBP5.31□□□□□ -1.56
VPS53-219ENST00000576019 MTERF1Q99551 399 aaKnown RBP5.31□□□□□ -1.56
VPS53-219ENST00000576019 GPA33Q99795 319 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 NFKBIZQ9BYH8 718 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 RAB6CQ9H0N0 254 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 ZNF703Q9H7S9 590 aaPredicted RBP5.31□□□□□ -1.56
VPS53-219ENST00000576019 VCPKMTQ9H867 229 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 HOMER3Q9NSC5 361 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 SYBUQ9NX95 663 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 MALT1Q9UDY8 824 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 ST6GALNAC2Q9UJ37 374 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 CHMP2BQ9UQN3 213 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 PAM16Q9Y3D7 125 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 ATG4BQ9Y4P1 393 aa5.31□□□□□ -1.56
VPS53-219ENST00000576019 KNTC1P50748 2209 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 PCDH15Q96QU1 1955 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 ANKRD30BLA7E2S9 258 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 MED7O43513 233 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 GPR137BO60478 399 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 CIB2O75838 187 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 WISP2O76076 250 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 KIAA0754O94854 1291 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 KDM4BO94953 1096 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 BMP10O95393 424 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 SERPINA3P01011 423 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 RRASP10301 218 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 PRF1P14222 555 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 GNSP15586 552 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 S1PR1P21453 382 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 GALP22466 123 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 DGKAP23743 735 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 SLC1A3P43003 542 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 CLCN4P51793 760 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 ACTR3P61158 418 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 CACNG1Q06432 222 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 KLRC3Q07444 240 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 SLC3A1Q07837 685 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 FUT7Q11130 342 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 ZNF169Q14929 603 aaPredicted RBP5.3□□□□□ -1.56
VPS53-219ENST00000576019 ADPRMQ3LIE5 342 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 UGT3A2Q3SY77 523 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 PHLDA2Q53GA4 152 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 C1orf185Q5T7R7 199 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 KLHL10Q6JEL2 608 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 KLC3Q6P597 504 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 Q6YL49 198 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 DEF8Q6ZN54 512 aa5.3□□□□□ -1.56
VPS53-219ENST00000576019 ZNF704Q6ZNC4 412 aaPredicted RBP5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms