RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 DLL3Q9NYJ7 618 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 PTTG2Q9NZH5 202 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 STX18Q9P2W9 335 aaKnown RBP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 LRWD1Q9UFC0 647 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 KCNE5Q9UJ90 142 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 ADAM29Q9UKF5 820 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 B9D1Q9UPM9 204 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 RUVBL2Q9Y230 463 aaKnown RBP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 NFE2L3Q9Y4A8 694 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 RNF115Q9Y4L5 304 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 SLCO1B1Q9Y6L6 691 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 RNF215Q9Y6U7 377 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 COL1A2P08123 1366 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 FRMPD4Q14CM0 1322 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 THSD7BQ9C0I4 1608 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 TRAV25A0A0B4J276 109 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 KRTAP4-8A0A0G2JLE6 195 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 IQCF5A8MTL0 148 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 F8W810 466 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 MS4A18H0YCH9 400 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 SMIM22K7EJ46 135 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF701M0R085 212 aaPredicted RBP4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 MATN3O15232 486 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 SLC16A5O15375 505 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 SDC3O75056 442 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 BCAS1O75363 584 aaPredicted RBP4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 KLHL2O95198 593 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 LDLRP01130 860 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 ALPIP09923 528 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 PRPS2P11908 318 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 SYT1P21579 422 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 DPP4P27487 766 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 LCN1P31025 176 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 GPR4P46093 362 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 LIMS1P48059 325 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 ACADVLP49748 655 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 PPT1P50897 306 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 ACLYP53396 1101 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 RABGGTBP53611 331 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 SNAP25P60880 206 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 RPS15P62841 145 aaKnown RBP4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 HERV-K104P63124 156 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 BDH1Q02338 343 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 CRYZQ08257 329 aaKnown RBP4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 FGL1Q08830 312 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 SLAQ13239 276 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 PKP1Q13835 747 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 HERC3Q15034 1050 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 MAPK6Q16659 721 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 KYAT1Q16773 422 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 EIF2S3LQ2VIR3 472 aaKnown RBP4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 NIPAL3Q6P499 406 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 TTLL10Q6ZVT0 673 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF534Q76KX8 674 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 EIF3MQ7L2H7 374 aaKnown RBP4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 TRPM8Q7Z2W7 1104 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 GDF7Q7Z4P5 450 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 TFAP2DQ7Z6R9 452 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 LUZP2Q86TE4 346 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 TMEM132CQ8N3T6 1108 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 MAB21L3Q8N8X9 362 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 MDGA1Q8NFP4 955 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 OR5M8Q8NGP6 311 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 MYCBPAPQ8TBZ2 947 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 UBTD2Q8WUN7 234 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 PHYHIPQ92561 330 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 RPL3LQ92901 407 aaKnown RBP4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 ERGIC1Q969X5 290 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 GRAMD2BQ96HH9 432 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF479Q96JC4 524 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 CASD1Q96PB1 797 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 MNTQ99583 582 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 SPATA16Q9BXB7 569 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 DNTTIP1Q9H147 329 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 UPF3AQ9H1J1 476 aaKnown RBP4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 RGCCQ9H4X1 137 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 ESRP2Q9H6T0 727 aaKnown RBP4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 SGK2Q9HBY8 427 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 CHRAC1Q9NRG0 131 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 SDHAF3Q9NRP4 125 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 AHSPQ9NZD4 102 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 TXNDC16Q9P2K2 825 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 MTRF1LQ9UGC7 380 aaKnown RBP4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 ERRFI1Q9UJM3 462 aaPredicted RBP4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 TBC1D24Q9ULP9 559 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 RHBDD3Q9Y3P4 386 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 OR10H1Q9Y4A9 318 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 SIRT4Q9Y6E7 314 aaPredicted RBP4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 STON1Q9Y6Q2 735 aa4.84□□□□□ -1.63
VPS35P1-201ENST00000563400 CASP8AP2Q9UKL3 1982 aa4.84□□□□□ -1.64
VPS35P1-201ENST00000563400 TRAV26-1A0A087WT03 109 aa4.83□□□□□ -1.64
VPS35P1-201ENST00000563400 PRR23D1E9PI22 279 aaPredicted RBP4.83□□□□□ -1.64
VPS35P1-201ENST00000563400 ATP6AP2O75787 350 aa4.83□□□□□ -1.64
VPS35P1-201ENST00000563400 CBR3O75828 277 aa4.83□□□□□ -1.64
VPS35P1-201ENST00000563400 SORBS2O94875 1100 aaKnown RBP4.83□□□□□ -1.64
VPS35P1-201ENST00000563400 SYNGR4O95473 234 aa4.83□□□□□ -1.64
VPS35P1-201ENST00000563400 MBP02144 154 aa4.83□□□□□ -1.64
VPS35P1-201ENST00000563400 PRR23D2P0DMB1 279 aaPredicted RBP4.83□□□□□ -1.64
VPS35P1-201ENST00000563400 NCK1P16333 377 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms