RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 RHPN2P1A8MT19 583 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 H3BNH8 94 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 TNFRSF11BO00300 401 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 BCAT2O15382 392 aaPredicted RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 ZNF749O43361 778 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 HS6ST1O60243 411 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 LCMT2O60294 686 aaKnown RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 PLOD3O60568 738 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 PGM3O95394 542 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 NSA2O95478 260 aaKnown RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 TBX6O95947 436 aaPredicted RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 ADAP00813 363 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 PROS1P07225 676 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 THBS1P07996 1170 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 ZNF888P0CJ79 500 aaPredicted RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 RNH1P13489 461 aaKnown RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 ETFAP13804 333 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 GLB1P16278 677 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 PORP16435 677 aaPredicted RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 POLR2CP19387 275 aaPredicted RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 ENDOUP21128 410 aaKnown RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 GSTM3P21266 225 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 MATN1P21941 496 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 LCN1P31025 176 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 PRKAR1BP31321 381 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 MLLT3P42568 568 aaPredicted RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 MVDP53602 400 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 PSMD4P55036 377 aaKnown RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 RAB38P57729 211 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 COX10Q12887 443 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 HYAL2Q12891 473 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 TUBA3CQ13748 450 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 GRM7Q14831 915 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 NR1D2Q14995 579 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 LARS2Q15031 903 aaKnown RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 TMEM44Q2T9K0 475 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 PROX2Q3B8N5 592 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 LIN52Q52LA3 116 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 OTUD3Q5T2D3 398 aaPredicted RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 C6orf52Q5T4I8 152 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 KDM4DQ6B0I6 523 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 ADNP2Q6IQ32 1131 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 ANKRD26P1Q6NSI1 321 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 CDC73Q6P1J9 531 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 USP51Q70EK9 711 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 C16orf62Q7Z3J2 963 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 UBE3DQ7Z6J8 389 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 PEX5LQ8IYB4 626 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 SLC43A2Q8N370 569 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 RNF175Q8N4F7 328 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 SVOPQ8N4V2 548 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 C2orf73Q8N5S3 287 aaPredicted RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 ATG16L2Q8NAA4 619 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 FLCNQ8NFG4 579 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 OR8K5Q8NH50 307 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 NFKBIDQ8NI38 313 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 FLVCR1-AS1Q8TAF5 88 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 CEP76Q8TAP6 659 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 ZNF420Q8TAQ5 688 aaPredicted RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 ADAMTS15Q8TE58 950 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 GIPC3Q8TF64 312 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 IPCEF1Q8WWN9 437 aaPredicted RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 FCGR1BQ92637 280 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 CIDECQ96AQ7 238 aaPredicted RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 DGCR14Q96DF8 476 aaKnown RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 AHCYL2Q96HN2 611 aaKnown RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 TPD52L3Q96J77 140 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 ART5Q96L15 291 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 SLC6A18Q96N87 628 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 ZNF300Q96RE9 604 aaPredicted RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 MAPKAP1Q9BPZ7 522 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 PINK1Q9BXM7 581 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 GABARAPL3Q9BY60 117 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 GLIPR2Q9H4G4 154 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 CXorf36Q9H7Y0 433 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 KRT84Q9NSB2 600 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 SLC6A13Q9NSD5 602 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 TEX10Q9NXF1 929 aaPredicted RBP7.1□□□□□ -1.27
VPS39-204ENST00000561818 SPHK1Q9NYA1 384 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 TMEM9Q9P0T7 183 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 GMEB2Q9UKD1 530 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 MGAT4BQ9UQ53 548 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 BTBD3Q9Y2F9 522 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 HCN4Q9Y3Q4 1203 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 MMACHCQ9Y4U1 282 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 ENPP4Q9Y6X5 453 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 COMMD3-BMI1R4GMX3 469 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 LRP4O75096 1905 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 A0A1W2PR48 441 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 A0A1W2PRQ8 180 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 IRGMA1A4Y4 181 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 C7orf72A4D263 438 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 FITM1A5D6W6 292 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 TRIM64CA6NLI5 447 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 B4DGG1 531 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 H0YGG7 62 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 M0QX08 132 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 UPK1AO00322 258 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 FAAHO00519 579 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 BCKDKO14874 412 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms