RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 SLC10A1Q14973 349 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 TEX35Q5T0J7 233 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 PRAMEF20Q5VT98 475 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 FRG2Q64ET8 278 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 LYPD8Q6UX82 237 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 MEX3BQ6ZN04 569 aaKnown RBP9.43□□□□□ -0.9
LDLR-214ENST00000560628 RNF111Q6ZNA4 994 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 TRILQ7L0X0 811 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 SLC29A4Q7RTT9 530 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 MILR1Q7Z6M3 343 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 FAM109AQ8N4B1 249 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 FAM13CQ8NE31 585 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 OR10G3Q8NGC4 313 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 LILRB4Q8NHJ6 448 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 SLC22A8Q8TCC7 542 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 DCAKDQ8WVC6 231 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 ART5Q96L15 291 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 LURAP1Q96LR2 239 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 JSRP1Q96MG2 331 aaPredicted RBP9.43□□□□□ -0.9
LDLR-214ENST00000560628 FRG2BQ96QU4 278 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 SMC6Q96SB8 1091 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 PAFAH2Q99487 392 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 FMO2Q99518 471 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 SERPINI1Q99574 410 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 NTMT1Q9BV86 223 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 FUT8Q9BYC5 575 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 MRPL1Q9BYD6 325 aaKnown RBP9.43□□□□□ -0.9
LDLR-214ENST00000560628 WWTR1Q9GZV5 400 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 TSPYL1Q9H0U9 437 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 TP63Q9H3D4 680 aaPredicted RBP9.43□□□□□ -0.9
LDLR-214ENST00000560628 LDAHQ9H6V9 325 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 EXO5Q9H790 373 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 ZBTB26Q9HCK0 441 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 TEX10Q9NXF1 929 aaPredicted RBP9.43□□□□□ -0.9
LDLR-214ENST00000560628 ALKBH4Q9NXW9 302 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 PSD3Q9NYI0 1048 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 XPR1Q9UBH6 696 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 PCTPQ9UKL6 214 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 ACAD8Q9UKU7 415 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 RNF6Q9Y252 685 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.43□□□□□ -0.9
LDLR-214ENST00000560628 ZNF407Q9C0G0 2248 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 EML6Q6ZMW3 1958 aa9.43□□□□□ -0.9
LDLR-214ENST00000560628 MYO9AB2RTY4 2548 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 A0A1B0GTL3 188 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 NKX2-6A6NCS4 301 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 STX16-NPEPL1H3BU86 382 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 STX16O14662 325 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 KRT38O76015 456 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 CLPSP04118 112 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 RFPL3SP0C7P2 107 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 SLC35E2P0CK97 266 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 ELAVL4P26378 380 aaKnown RBP9.42□□□□□ -0.9
LDLR-214ENST00000560628 PIK3R1P27986 724 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 SERPINB3P29508 390 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 ECHS1P30084 290 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 MAGEA12P43365 314 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 MAN2A2P49641 1150 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 SLC37A1P57057 533 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 KRTAP10-9P60411 292 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 KCNJ2P63252 427 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 IFT88Q13099 833 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 TRAF3Q13114 568 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 CCNYL2Q5T2Q4 361 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 METTL2BQ6P1Q9 378 aaKnown RBP9.42□□□□□ -0.9
LDLR-214ENST00000560628 ADGRD1Q6QNK2 874 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 TAOK1Q7L7X3 1001 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 NUDT13Q86X67 352 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 SLC15A4Q8N697 577 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 MNS1Q8NEH6 495 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 OR4F6Q8NGB9 312 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 OR4K14Q8NGD5 310 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 OR10Q1Q8NGQ4 319 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 PAQR8Q8TEZ7 354 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 ASB5Q8WWX0 329 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 SPACA9Q96E40 222 aaPredicted RBP9.42□□□□□ -0.9
LDLR-214ENST00000560628 SPOCK3Q9BQ16 436 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 PELOQ9BRX2 385 aaKnown RBP9.42□□□□□ -0.9
LDLR-214ENST00000560628 ENKD1Q9H0I2 346 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 CXorf21Q9HAI6 301 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 PROK2Q9HC23 129 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 SH2D2AQ9NP31 389 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 FARSBQ9NSD9 589 aaKnown RBP9.42□□□□□ -0.9
LDLR-214ENST00000560628 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.42□□□□□ -0.92e-7■■■□□ 17.7
LDLR-214ENST00000560628 ITGB1BP2Q9UKP3 347 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 TMCO1Q9UM00 188 aa9.42□□□□□ -0.9
LDLR-214ENST00000560628 DNAJC13O75165 2243 aa9.41□□□□□ -0.9
LDLR-214ENST00000560628 A0A087WUV0 522 aaPredicted RBP9.41□□□□□ -0.9
LDLR-214ENST00000560628 TRGV5A0A0B4J1U4 118 aa9.41□□□□□ -0.9
LDLR-214ENST00000560628 A0A1B0GVC2 190 aa9.41□□□□□ -0.9
LDLR-214ENST00000560628 C2orf92A0A1B0GVN3 265 aa9.41□□□□□ -0.9
LDLR-214ENST00000560628 BCKDKO14874 412 aa9.41□□□□□ -0.9
LDLR-214ENST00000560628 SEMA3DO95025 777 aa9.41□□□□□ -0.9
LDLR-214ENST00000560628 IGHG3P01860 377 aa9.41□□□□□ -0.9
LDLR-214ENST00000560628 SNRPAP09012 282 aaKnown RBP9.41□□□□□ -0.9
LDLR-214ENST00000560628 SBK3P0C264 359 aa9.41□□□□□ -0.9
LDLR-214ENST00000560628 FBXO45P0C2W1 286 aa9.41□□□□□ -0.9
LDLR-214ENST00000560628 CT62P0C5K7 136 aa9.41□□□□□ -0.9
LDLR-214ENST00000560628 CTAGE8P0CG41 777 aa9.41□□□□□ -0.9
LDLR-214ENST00000560628 COL6A2P12110 1019 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms