RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 KIF27Q86VH2 1401 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 CASKIN1Q8WXD9 1431 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 PLEKHH1Q9ULM0 1364 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 KIF16BQ96L93 1317 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 THOC2Q8NI27 1593 aaKnown RBP2.76□□□□□ -1.97
VPS13C-208ENST00000559119 CCDC162PA2VCL2 907 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 FCGR3BO75015 233 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 OR6A2O95222 327 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 U2AF2P26368 475 aaKnown RBP eCLIP2.76□□□□□ -1.97
VPS13C-208ENST00000559119 PSMB4P28070 264 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 TRPC1P48995 793 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 GTF2A1P52655 376 aaPredicted RBP2.76□□□□□ -1.97
VPS13C-208ENST00000559119 PSG7Q13046 419 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 TRDNQ13061 729 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 MICAQ29983 383 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 IQCCQ4KMZ1 466 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 C6orf136Q5SQH8 315 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 CFAP58Q5T655 872 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 LYPLAL1Q5VWZ2 237 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 IRGCQ6NXR0 463 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 TDHQ8IZJ6 230 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 CCDC89Q8N998 374 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 RNF149Q8NC42 400 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 OR6J1Q8NGC5 347 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 OR1K1Q8NGR3 316 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 KIF18AQ8NI77 898 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 ZNF721Q8TF20 911 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 SNRNP27Q8WVK2 155 aaKnown RBP2.76□□□□□ -1.97
VPS13C-208ENST00000559119 SEPT8Q92599 483 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 TTYH2Q9BSA4 534 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 RTBDNQ9BSG5 229 aaPredicted RBP2.76□□□□□ -1.97
VPS13C-208ENST00000559119 RWDD1Q9H446 243 aaPredicted RBP2.76□□□□□ -1.97
VPS13C-208ENST00000559119 MED4Q9NPJ6 270 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 TIGARQ9NQ88 270 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 GMEB2Q9UKD1 530 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 KNSTRNQ9Y448 316 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 DDX49Q9Y6V7 483 aaKnown RBP2.76□□□□□ -1.97
VPS13C-208ENST00000559119 EPRSP07814 1512 aaKnown RBP2.76□□□□□ -1.97
VPS13C-208ENST00000559119 SCAF11Q99590 1463 aaKnown RBP2.76□□□□□ -1.97
VPS13C-208ENST00000559119 FHOD3Q2V2M9 1422 aa2.76□□□□□ -1.97
VPS13C-208ENST00000559119 ROCK1Q13464 1354 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 USP47Q96K76 1375 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 NACAE9PAV3 2078 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 KDM5CP41229 1560 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 SAMD9Q5K651 1589 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 A0A0B4J203 849 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 ATP8B1O43520 1251 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 CLN5O75503 358 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 FOXH1O75593 365 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 GJB5O95377 273 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 GGPS1O95749 300 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 MBD3O95983 291 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 CALRP27797 417 aaKnown RBP2.75□□□□□ -1.97
VPS13C-208ENST00000559119 CASQ1P31415 396 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 TNNT3P45378 269 aaPredicted RBP2.75□□□□□ -1.97
VPS13C-208ENST00000559119 SLC10A1Q14973 349 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 EMC2Q15006 297 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 ZKSCAN8Q15776 578 aaPredicted RBP2.75□□□□□ -1.97
VPS13C-208ENST00000559119 TFDP3Q5H9I0 405 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 OTPQ5XKR4 325 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 CAVIN1Q6NZI2 390 aaKnown RBP2.75□□□□□ -1.97
VPS13C-208ENST00000559119 C14orf178Q8N769 122 aaPredicted RBP2.75□□□□□ -1.97
VPS13C-208ENST00000559119 IQUBQ8NA54 791 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 SMYD1Q8NB12 490 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 KCTD6Q8NC69 237 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 ZNF397Q8NF99 534 aaPredicted RBP2.75□□□□□ -1.97
VPS13C-208ENST00000559119 TCP11Q8WWU5 503 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 C16orf58Q96GQ5 468 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 C16orf74Q96GX8 76 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 MLXQ9UH92 298 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 V9GYY5 206 aaPredicted RBP2.75□□□□□ -1.97
VPS13C-208ENST00000559119 CDC42BPBQ9Y5S2 1711 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 E9PCH4 1651 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 GCC2Q8IWJ2 1684 aa2.75□□□□□ -1.97
VPS13C-208ENST00000559119 KANK1Q14678 1352 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 PLXNC1O60486 1568 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 EFCAB5A4FU69 1503 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 ARHGEF11O15085 1522 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 ZNF608Q9ULD9 1512 aaPredicted RBP2.74□□□□□ -1.97
VPS13C-208ENST00000559119 BCORL1Q5H9F3 1711 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 NKTRP30414 1462 aaKnown RBP2.74□□□□□ -1.97
VPS13C-208ENST00000559119 FGD5Q6ZNL6 1462 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 RALGAPBQ86X10 1494 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 TIMM44O43615 452 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 ANKRD34CP0C6C1 535 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 LBPP18428 481 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 RPA1P27694 616 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 GNB2P62879 340 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 MAP2K1Q02750 393 aaPredicted RBP2.74□□□□□ -1.97
VPS13C-208ENST00000559119 NCBP1Q09161 790 aaKnown RBP2.74□□□□□ -1.97
VPS13C-208ENST00000559119 ASAH1Q13510 395 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 KCTD2Q14681 263 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 ADCK2Q7Z695 626 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 CCDC91Q7Z6B0 441 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 FBXW8Q8N3Y1 598 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 OR13F1Q8NGS4 319 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 HEXDCQ8WVB3 486 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 SYAP1Q96A49 352 aaPredicted RBP2.74□□□□□ -1.97
VPS13C-208ENST00000559119 ERGIC2Q96RQ1 377 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 SERINC2Q96SA4 455 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms